Wall clock time and date at job start Tue Mar 31 2020 22:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.58148 * 2 1 4 4 C 1.53188 * 109.58544 * 239.71948 * 2 1 3 5 5 H 1.08998 * 109.50100 * 65.59180 * 4 2 1 6 6 N 1.46503 * 109.49756 * 305.52301 * 4 2 1 7 7 C 1.34773 * 119.99621 * 155.27740 * 6 4 2 8 8 O 1.21587 * 120.00192 * 359.72862 * 7 6 4 9 9 C 1.47552 * 119.99678 * 179.72788 * 7 6 4 10 10 C 1.38701 * 120.38818 * 355.15878 * 9 7 6 11 11 C 1.38971 * 120.53421 * 180.02562 * 10 9 7 12 12 C 1.36208 * 121.24152 * 359.97338 * 11 10 9 13 13 C 1.40710 * 120.19993 * 359.97438 * 12 11 10 14 14 N 1.33685 * 120.94690 * 180.02562 * 13 12 11 15 15 C 1.31078 * 121.34033 * 179.24389 * 14 13 12 16 16 C 1.39340 * 121.70497 * 0.77880 * 15 14 13 17 17 C 1.36670 * 119.86769 * 359.48339 * 16 15 14 18 18 C 1.40470 * 118.17014 * 359.97438 * 17 16 15 19 19 C 1.53046 * 109.31032 * 185.57480 * 4 2 1 20 20 C 1.53045 * 109.53808 * 61.36393 * 19 4 2 21 21 C 1.53190 * 109.31135 * 298.63436 * 20 19 4 22 22 N 1.46921 * 109.58682 * 120.42627 * 2 1 3 23 23 C 1.36933 * 120.63394 * 353.37301 * 22 2 1 24 24 H 1.08011 * 119.99943 * 41.25709 * 23 22 2 25 25 C 1.38813 * 120.00473 * 221.25566 * 23 22 2 26 26 N 1.31621 * 119.99757 * 215.60414 * 25 23 22 27 27 Si 1.86798 * 119.99948 * 35.59954 * 25 23 22 28 28 H 1.48500 * 109.47014 * 84.99611 * 27 25 23 29 29 H 1.48503 * 109.47070 * 204.99830 * 27 25 23 30 30 H 1.48501 * 109.46984 * 324.99502 * 27 25 23 31 31 H 1.09008 * 109.46684 * 180.28436 * 1 2 3 32 32 H 1.09006 * 109.47327 * 300.28191 * 1 2 3 33 33 H 1.09001 * 109.47399 * 60.28334 * 1 2 3 34 34 H 0.96999 * 120.00080 * 335.00464 * 6 4 2 35 35 H 1.07999 * 119.73010 * 0.02562 * 10 9 7 36 36 H 1.07997 * 119.37720 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.89911 * 179.97438 * 12 11 10 38 38 H 1.07996 * 119.14322 * 180.25989 * 15 14 13 39 39 H 1.08002 * 120.06303 * 179.45910 * 16 15 14 40 40 H 1.08000 * 120.91713 * 179.97438 * 17 16 15 41 41 H 1.09002 * 109.46096 * 181.37832 * 19 4 2 42 42 H 1.08994 * 109.46308 * 301.34460 * 19 4 2 43 43 H 1.08997 * 109.49629 * 178.68525 * 20 19 4 44 44 H 1.09002 * 109.52423 * 58.60287 * 20 19 4 45 45 H 1.09001 * 109.59065 * 294.84519 * 21 20 19 46 46 H 1.09002 * 109.58837 * 174.42366 * 21 20 19 47 47 H 0.97005 * 120.00028 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2463 5 1 1.7655 -0.1644 -2.1371 6 7 1.4515 -2.0663 -1.3097 7 6 1.3336 -2.6955 -2.4957 8 8 1.7141 -2.1502 -3.5137 9 6 0.7428 -4.0461 -2.5588 10 6 0.3982 -4.7163 -1.3944 11 6 -0.1579 -5.9886 -1.4502 12 6 -0.3802 -6.6108 -2.6413 13 6 -0.0473 -5.9685 -3.8483 14 7 -0.2595 -6.5651 -5.0257 15 6 0.0340 -5.9681 -6.1551 16 6 0.5948 -4.6929 -6.1852 17 6 0.8416 -4.0301 -5.0158 18 6 0.5145 -4.6703 -3.8090 19 6 3.5675 -0.8464 -1.1712 20 6 3.9570 -1.6656 0.0614 21 6 3.4651 -0.9485 1.3225 22 7 2.0226 -0.7010 1.1936 23 6 1.1538 -1.1154 2.1676 24 1 0.2060 -1.5553 1.8943 25 6 1.4912 -0.9701 3.5062 26 7 1.1228 -1.8824 4.3805 27 14 2.4683 0.5201 4.0668 28 1 1.5414 1.6513 4.3246 29 1 3.2043 0.1891 5.3134 30 1 3.4359 0.9044 3.0079 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3634 0.5182 0.8875 33 1 -0.3634 0.5094 -0.8925 34 1 1.1479 -2.5013 -0.4976 35 1 0.5635 -4.2455 -0.4365 36 1 -0.4196 -6.4932 -0.5319 37 1 -0.8132 -7.6000 -2.6594 38 1 -0.1560 -6.4813 -7.0861 39 1 0.8343 -4.2294 -7.1309 40 1 1.2760 -3.0414 -5.0193 41 1 3.9379 -1.3421 -2.0685 42 1 4.0061 0.1488 -1.0991 43 1 5.0413 -1.7695 0.1014 44 1 3.4989 -2.6530 0.0022 45 1 3.9904 0.0004 1.4317 46 1 3.6519 -1.5743 2.1952 47 1 1.3589 -1.7811 5.3159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993641986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:35 Heat of formation + Delta-G solvation = 48.863101 kcal Electronic energy + Delta-G solvation = -30045.205279 eV Core-core repulsion = 26193.556371 eV Total energy + Delta-G solvation = -3851.648908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.10717 -39.70640 -37.88620 -36.92907 -34.16178 -33.32931 -32.73169 -31.90592 -30.75164 -30.61456 -29.44993 -26.51634 -25.00392 -24.68903 -23.62420 -23.36934 -22.13292 -21.05748 -20.38533 -19.09920 -18.27967 -17.58598 -16.87497 -16.56440 -16.20305 -15.60269 -15.15632 -15.04831 -14.84527 -14.54512 -14.32543 -14.02344 -13.87764 -13.57757 -13.42659 -13.31626 -13.06261 -12.84305 -12.54978 -12.24056 -12.14377 -11.87132 -11.74677 -11.45497 -11.36341 -11.27390 -10.84212 -10.72171 -10.60589 -10.53423 -10.34148 -10.12610 -10.02772 -9.75312 -9.55945 -9.18940 -8.89836 -8.77037 -8.44487 -8.30321 -6.83187 -6.20637 -3.51513 0.09112 0.73311 1.71151 2.63066 3.29595 3.33464 3.37704 3.44789 3.49925 4.08849 4.16074 4.48141 4.60016 4.67434 4.74712 4.81720 4.86863 4.96314 5.05843 5.11522 5.28495 5.33334 5.36411 5.43035 5.50262 5.71305 5.73273 5.76474 5.89636 5.92688 6.04962 6.07498 6.10791 6.20790 6.26726 6.26915 6.30019 6.35845 6.43854 6.51077 6.54467 6.68971 6.72980 6.82717 6.85659 6.92938 7.02807 7.78528 7.82556 7.91286 8.27352 8.42332 8.87822 9.60115 10.08938 10.94230 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.003348 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.509674 B = 8361.010019 C = 9196.265088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.154 3.846 3 H 0.042 0.958 4 C 0.134 3.866 5 H 0.081 0.919 6 N -0.690 5.690 7 C 0.557 3.443 8 O -0.550 6.550 9 C -0.111 4.111 10 C -0.070 4.070 11 C -0.106 4.106 12 C -0.072 4.072 13 C 0.116 3.884 14 N -0.480 5.480 15 C 0.128 3.872 16 C -0.185 4.185 17 C -0.058 4.058 18 C -0.066 4.066 19 C -0.122 4.122 20 C -0.135 4.135 21 C 0.143 3.857 22 N -0.595 5.595 23 C -0.284 4.284 24 H 0.077 0.923 25 C 0.056 3.944 26 N -0.875 5.875 27 Si 0.843 3.157 28 H -0.288 1.288 29 H -0.298 1.298 30 H -0.261 1.261 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.411 0.589 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.179 0.821 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.024 0.976 46 H 0.067 0.933 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -5.347 -15.400 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.048 3.952 3 H 0.060 0.940 4 C 0.028 3.972 5 H 0.099 0.901 6 N -0.341 5.341 7 C 0.345 3.655 8 O -0.431 6.431 9 C -0.115 4.115 10 C -0.089 4.089 11 C -0.126 4.126 12 C -0.091 4.091 13 C -0.005 4.005 14 N -0.188 5.188 15 C -0.045 4.045 16 C -0.205 4.205 17 C -0.083 4.083 18 C -0.069 4.069 19 C -0.161 4.161 20 C -0.174 4.174 21 C 0.017 3.983 22 N -0.320 5.320 23 C -0.411 4.411 24 H 0.095 0.905 25 C -0.148 4.148 26 N -0.513 5.513 27 Si 0.670 3.330 28 H -0.215 1.215 29 H -0.225 1.225 30 H -0.185 1.185 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.250 0.750 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.154 0.846 40 H 0.196 0.804 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.042 0.958 46 H 0.086 0.914 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.604 -5.867 -15.757 16.825 hybrid contribution 0.801 1.474 0.947 1.926 sum 0.197 -4.393 -14.810 15.449 Atomic orbital electron populations 1.21753 0.94928 1.01894 1.00549 1.20870 0.94027 0.93750 0.86550 0.94010 1.21553 0.92797 0.82865 0.99984 0.90094 1.45973 1.60692 1.18461 1.08944 1.18071 0.78607 0.84872 0.83976 1.90497 1.51495 1.67361 1.33793 1.19967 1.03035 0.95313 0.93139 1.21647 0.94504 0.94645 0.98088 1.20901 0.98436 0.94824 0.98404 1.20981 0.97907 1.00095 0.90147 1.18847 0.97899 0.91037 0.92688 1.68035 1.17515 1.35512 0.97709 1.22962 0.92996 0.92313 0.96203 1.22025 1.02070 0.96675 0.99715 1.22702 0.93007 1.02054 0.90570 1.18640 0.99830 0.94728 0.93701 1.21785 0.95495 1.00502 0.98285 1.22003 0.99217 0.99781 0.96402 1.21300 0.84596 0.96809 0.95547 1.44433 1.02515 1.65159 1.19861 1.18519 1.02492 1.35824 0.84300 0.90530 1.25575 0.96620 0.96643 0.95944 1.70072 1.46746 1.30940 1.03516 0.87381 0.80606 0.86943 0.78106 1.21542 1.22460 1.18540 0.92550 0.91506 0.94137 0.75043 0.84212 0.84296 0.84454 0.82621 0.84639 0.80393 0.92584 0.91722 0.93048 0.92143 0.95778 0.91447 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 7.85 37.16 0.29 -1.98 16 2 C 0.15 2.74 3.20 -67.60 -0.22 2.52 16 3 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.13 2.14 2.32 -67.81 -0.16 1.98 16 5 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 6 N -0.69 -10.74 3.42 -54.72 -0.19 -10.92 16 7 C 0.56 8.77 7.70 -12.46 -0.10 8.67 16 8 O -0.55 -9.47 13.06 5.29 0.07 -9.40 16 9 C -0.11 -1.60 5.90 -104.65 -0.62 -2.22 16 10 C -0.07 -0.90 9.52 -39.14 -0.37 -1.27 16 11 C -0.11 -1.19 9.92 -40.04 -0.40 -1.58 16 12 C -0.07 -0.86 9.96 -39.38 -0.39 -1.25 16 13 C 0.12 1.61 6.60 -84.88 -0.56 1.05 16 14 N -0.48 -6.36 10.34 -10.99 -0.11 -6.47 16 15 C 0.13 1.38 11.15 -17.46 -0.19 1.19 16 16 C -0.18 -2.01 10.03 -39.74 -0.40 -2.41 16 17 C -0.06 -0.79 9.29 -39.31 -0.37 -1.15 16 18 C -0.07 -0.96 5.76 -106.53 -0.61 -1.57 16 19 C -0.12 -1.91 5.57 -26.68 -0.15 -2.05 16 20 C -0.13 -2.24 5.93 -26.61 -0.16 -2.39 16 21 C 0.14 2.81 4.62 -3.71 -0.02 2.79 16 22 N -0.59 -12.27 2.12 -164.77 -0.35 -12.62 16 23 C -0.28 -6.85 8.42 -15.06 -0.13 -6.98 16 24 H 0.08 1.96 6.82 -52.48 -0.36 1.60 16 25 C 0.06 1.45 4.80 -17.43 -0.08 1.37 16 26 N -0.87 -24.27 13.97 55.49 0.78 -23.49 16 27 Si 0.84 20.12 27.43 -169.99 -4.66 15.45 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 29 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 30 H -0.26 -5.99 5.33 56.52 0.30 -5.69 16 31 H 0.06 0.97 6.36 -51.92 -0.33 0.64 16 32 H 0.07 1.24 7.71 -51.93 -0.40 0.84 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.41 6.59 5.83 -40.82 -0.24 6.36 16 35 H 0.14 1.75 6.41 -52.49 -0.34 1.42 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.18 2.58 4.95 -52.51 -0.26 2.32 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 45 H 0.02 0.49 6.75 -51.93 -0.35 0.14 16 46 H 0.07 1.45 7.05 -51.93 -0.37 1.09 16 47 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -28.88 366.68 -10.03 -38.91 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.47 Total: 8.30 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -4.63 Total: -5.28 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.12 Total: -53.50 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.66 Total: 15.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.88 -10.03 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993641986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.776 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds