Wall clock time and date at job start Tue Mar 31 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.58148 * 2 1 4 4 C 1.53188 * 109.58544 * 239.71948 * 2 1 3 5 5 H 1.08998 * 109.50100 * 65.59180 * 4 2 1 6 6 N 1.46503 * 109.49756 * 305.52301 * 4 2 1 7 7 C 1.34773 * 119.99621 * 155.27740 * 6 4 2 8 8 O 1.21587 * 120.00192 * 359.72862 * 7 6 4 9 9 C 1.47552 * 119.99678 * 179.72788 * 7 6 4 10 10 C 1.38701 * 120.38818 * 355.15878 * 9 7 6 11 11 C 1.38971 * 120.53421 * 180.02562 * 10 9 7 12 12 C 1.36208 * 121.24152 * 359.97338 * 11 10 9 13 13 C 1.40710 * 120.19993 * 359.97438 * 12 11 10 14 14 N 1.33685 * 120.94690 * 180.02562 * 13 12 11 15 15 C 1.31078 * 121.34033 * 179.24389 * 14 13 12 16 16 C 1.39340 * 121.70497 * 0.77880 * 15 14 13 17 17 C 1.36670 * 119.86769 * 359.48339 * 16 15 14 18 18 C 1.40470 * 118.17014 * 359.97438 * 17 16 15 19 19 C 1.53046 * 109.31032 * 185.57480 * 4 2 1 20 20 C 1.53045 * 109.53808 * 61.36393 * 19 4 2 21 21 C 1.53190 * 109.31135 * 298.63436 * 20 19 4 22 22 N 1.46921 * 109.58682 * 120.42627 * 2 1 3 23 23 C 1.36933 * 120.63394 * 353.37301 * 22 2 1 24 24 H 1.08011 * 119.99943 * 41.25709 * 23 22 2 25 25 C 1.38813 * 120.00473 * 221.25566 * 23 22 2 26 26 N 1.31621 * 119.99757 * 215.60414 * 25 23 22 27 27 Si 1.86798 * 119.99948 * 35.59954 * 25 23 22 28 28 H 1.48500 * 109.47014 * 84.99611 * 27 25 23 29 29 H 1.48503 * 109.47070 * 204.99830 * 27 25 23 30 30 H 1.48501 * 109.46984 * 324.99502 * 27 25 23 31 31 H 1.09008 * 109.46684 * 180.28436 * 1 2 3 32 32 H 1.09006 * 109.47327 * 300.28191 * 1 2 3 33 33 H 1.09001 * 109.47399 * 60.28334 * 1 2 3 34 34 H 0.96999 * 120.00080 * 335.00464 * 6 4 2 35 35 H 1.07999 * 119.73010 * 0.02562 * 10 9 7 36 36 H 1.07997 * 119.37720 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.89911 * 179.97438 * 12 11 10 38 38 H 1.07996 * 119.14322 * 180.25989 * 15 14 13 39 39 H 1.08002 * 120.06303 * 179.45910 * 16 15 14 40 40 H 1.08000 * 120.91713 * 179.97438 * 17 16 15 41 41 H 1.09002 * 109.46096 * 181.37832 * 19 4 2 42 42 H 1.08994 * 109.46308 * 301.34460 * 19 4 2 43 43 H 1.08997 * 109.49629 * 178.68525 * 20 19 4 44 44 H 1.09002 * 109.52423 * 58.60287 * 20 19 4 45 45 H 1.09001 * 109.59065 * 294.84519 * 21 20 19 46 46 H 1.09002 * 109.58837 * 174.42366 * 21 20 19 47 47 H 0.97005 * 120.00028 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2463 5 1 1.7655 -0.1644 -2.1371 6 7 1.4515 -2.0663 -1.3097 7 6 1.3336 -2.6955 -2.4957 8 8 1.7141 -2.1502 -3.5137 9 6 0.7428 -4.0461 -2.5588 10 6 0.3982 -4.7163 -1.3944 11 6 -0.1579 -5.9886 -1.4502 12 6 -0.3802 -6.6108 -2.6413 13 6 -0.0473 -5.9685 -3.8483 14 7 -0.2595 -6.5651 -5.0257 15 6 0.0340 -5.9681 -6.1551 16 6 0.5948 -4.6929 -6.1852 17 6 0.8416 -4.0301 -5.0158 18 6 0.5145 -4.6703 -3.8090 19 6 3.5675 -0.8464 -1.1712 20 6 3.9570 -1.6656 0.0614 21 6 3.4651 -0.9485 1.3225 22 7 2.0226 -0.7010 1.1936 23 6 1.1538 -1.1154 2.1676 24 1 0.2060 -1.5553 1.8943 25 6 1.4912 -0.9701 3.5062 26 7 1.1228 -1.8824 4.3805 27 14 2.4683 0.5201 4.0668 28 1 1.5414 1.6513 4.3246 29 1 3.2043 0.1891 5.3134 30 1 3.4359 0.9044 3.0079 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3634 0.5182 0.8875 33 1 -0.3634 0.5094 -0.8925 34 1 1.1479 -2.5013 -0.4976 35 1 0.5635 -4.2455 -0.4365 36 1 -0.4196 -6.4932 -0.5319 37 1 -0.8132 -7.6000 -2.6594 38 1 -0.1560 -6.4813 -7.0861 39 1 0.8343 -4.2294 -7.1309 40 1 1.2760 -3.0414 -5.0193 41 1 3.9379 -1.3421 -2.0685 42 1 4.0061 0.1488 -1.0991 43 1 5.0413 -1.7695 0.1014 44 1 3.4989 -2.6530 0.0022 45 1 3.9904 0.0004 1.4317 46 1 3.6519 -1.5743 2.1952 47 1 1.3589 -1.7811 5.3159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993641986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:34 Heat of formation + Delta-G solvation = 33.681208 kcal Electronic energy + Delta-G solvation = -30045.863616 eV Core-core repulsion = 26193.556371 eV Total energy + Delta-G solvation = -3852.307245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.12173 -40.92915 -39.24749 -37.90410 -35.67378 -34.32254 -34.23317 -33.50911 -32.14190 -31.53341 -30.64689 -27.97056 -26.66457 -25.72108 -24.68743 -24.38621 -23.60224 -22.41851 -21.67195 -20.50819 -19.30272 -18.67067 -18.30737 -17.75957 -17.31111 -16.97597 -16.74819 -16.31439 -15.99657 -15.73546 -15.49471 -15.39719 -15.13673 -14.89923 -14.73221 -14.51776 -14.30674 -14.06496 -14.01382 -13.73431 -13.46527 -13.08011 -12.84066 -12.78884 -12.70148 -12.63517 -12.34960 -12.30529 -12.14044 -11.91652 -11.57395 -11.51496 -11.45210 -11.20762 -11.12422 -10.42528 -10.24993 -10.01762 -9.82204 -9.30541 -8.59463 -8.21162 -5.46009 -0.88324 -0.19531 0.70420 1.40310 1.50147 1.55759 1.66174 2.17336 2.21179 2.51846 3.00488 3.11603 3.31092 3.40018 3.55391 3.74236 3.82680 3.87046 3.97761 4.03372 4.08999 4.13524 4.18838 4.32276 4.43325 4.46386 4.53209 4.63338 4.67754 4.79330 4.80339 4.91350 4.92905 4.96900 5.02856 5.08358 5.13585 5.16810 5.26198 5.28218 5.30998 5.33795 5.44633 5.49831 5.57461 5.68009 5.80559 5.98512 6.32072 6.57006 6.87292 7.05537 7.19262 7.70375 8.21457 8.97689 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.003348 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.509674 B = 8361.010019 C = 9196.265088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.051 0.949 4 C 0.140 3.860 5 H 0.087 0.913 6 N -0.690 5.690 7 C 0.559 3.441 8 O -0.567 6.567 9 C -0.133 4.133 10 C -0.068 4.068 11 C -0.107 4.107 12 C -0.068 4.068 13 C 0.096 3.904 14 N -0.496 5.496 15 C 0.128 3.872 16 C -0.170 4.170 17 C -0.084 4.084 18 C -0.083 4.083 19 C -0.116 4.116 20 C -0.124 4.124 21 C 0.142 3.858 22 N -0.602 5.602 23 C -0.253 4.253 24 H 0.058 0.942 25 C 0.008 3.992 26 N -0.920 5.920 27 Si 0.890 3.110 28 H -0.298 1.298 29 H -0.309 1.309 30 H -0.245 1.245 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.408 0.592 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.196 0.804 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.027 0.973 46 H 0.044 0.956 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 -5.616 -17.825 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.069 0.931 4 C 0.034 3.966 5 H 0.105 0.895 6 N -0.340 5.340 7 C 0.347 3.653 8 O -0.450 6.450 9 C -0.137 4.137 10 C -0.087 4.087 11 C -0.126 4.126 12 C -0.087 4.087 13 C -0.025 4.025 14 N -0.205 5.205 15 C -0.044 4.044 16 C -0.190 4.190 17 C -0.110 4.110 18 C -0.086 4.086 19 C -0.155 4.155 20 C -0.163 4.163 21 C 0.017 3.983 22 N -0.327 5.327 23 C -0.383 4.383 24 H 0.076 0.924 25 C -0.192 4.192 26 N -0.561 5.561 27 Si 0.718 3.282 28 H -0.226 1.226 29 H -0.236 1.236 30 H -0.169 1.169 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.246 0.754 35 H 0.156 0.844 36 H 0.183 0.817 37 H 0.176 0.824 38 H 0.213 0.787 39 H 0.186 0.814 40 H 0.183 0.817 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.063 0.937 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.193 -6.110 -18.216 19.214 hybrid contribution 0.630 1.502 1.525 2.231 sum 0.437 -4.609 -16.691 17.321 Atomic orbital electron populations 1.21687 0.94531 1.01493 1.00849 1.20999 0.94420 0.94037 0.85757 0.93124 1.21445 0.93170 0.82976 0.98997 0.89475 1.45941 1.60846 1.18331 1.08861 1.18257 0.78176 0.85286 0.83532 1.90490 1.52290 1.67963 1.34220 1.19916 1.04742 0.95054 0.93941 1.21741 0.94149 0.95293 0.97489 1.21157 0.97841 0.94154 0.99452 1.21275 0.97003 1.00772 0.89656 1.19142 0.98526 0.91091 0.93737 1.68099 1.18206 1.35989 0.98160 1.23643 0.91507 0.92317 0.96926 1.22391 1.00034 0.96426 1.00099 1.22672 0.94691 1.02074 0.91519 1.18821 1.00440 0.95352 0.93985 1.21745 0.95040 1.01046 0.97632 1.21867 1.00310 0.98969 0.95171 1.21279 0.83944 0.96795 0.96282 1.44513 1.02629 1.65755 1.19835 1.18462 1.01781 1.33297 0.84722 0.92422 1.25986 0.98442 0.98319 0.96425 1.70149 1.49825 1.32583 1.03585 0.86612 0.79578 0.84326 0.77677 1.22611 1.23622 1.16865 0.93314 0.93341 0.91670 0.75430 0.84449 0.81697 0.82385 0.78743 0.81406 0.81727 0.92364 0.90356 0.91030 0.93039 0.95514 0.93739 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 7.85 71.98 0.56 -3.68 16 2 C 0.15 5.22 3.20 44.98 0.14 5.37 16 3 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 4 C 0.14 4.26 2.32 45.07 0.10 4.36 16 5 H 0.09 2.60 7.58 -2.39 -0.02 2.59 16 6 N -0.69 -21.11 3.42 -445.31 -1.52 -22.63 16 7 C 0.56 17.50 7.70 86.70 0.67 18.16 16 8 O -0.57 -19.37 13.06 -3.99 -0.05 -19.42 16 9 C -0.13 -3.85 5.90 -19.88 -0.12 -3.97 16 10 C -0.07 -1.73 9.52 22.56 0.21 -1.51 16 11 C -0.11 -2.27 9.92 21.97 0.22 -2.05 16 12 C -0.07 -1.52 9.96 22.40 0.22 -1.30 16 13 C 0.10 2.55 6.60 40.27 0.27 2.81 16 14 N -0.50 -12.23 10.34 -188.68 -1.95 -14.18 16 15 C 0.13 2.43 11.15 85.07 0.95 3.38 16 16 C -0.17 -3.31 10.03 22.17 0.22 -3.08 16 17 C -0.08 -2.23 9.29 22.45 0.21 -2.02 16 18 C -0.08 -2.39 5.76 -21.10 -0.12 -2.51 16 19 C -0.12 -3.37 5.57 30.62 0.17 -3.20 16 20 C -0.12 -3.91 5.93 30.67 0.18 -3.72 16 21 C 0.14 5.42 4.62 86.36 0.40 5.82 16 22 N -0.60 -24.40 2.12 -675.22 -1.43 -25.84 16 23 C -0.25 -12.33 8.42 84.03 0.71 -11.63 16 24 H 0.06 3.02 6.82 -2.90 -0.02 3.00 16 25 C 0.01 0.41 4.80 84.86 0.41 0.82 16 26 N -0.92 -52.42 13.97 21.65 0.30 -52.12 16 27 Si 0.89 41.91 27.43 68.60 1.88 43.80 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 30 H -0.24 -10.72 5.33 99.48 0.53 -10.19 16 31 H 0.05 1.67 6.36 -2.38 -0.02 1.66 16 32 H 0.05 1.77 7.71 -2.38 -0.02 1.75 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.41 13.10 5.83 -92.71 -0.54 12.56 16 35 H 0.14 3.49 6.41 -2.91 -0.02 3.48 16 36 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.17 4.79 4.95 -3.29 -0.02 4.77 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 1.72 7.53 -2.39 -0.02 1.70 16 45 H 0.03 1.02 6.75 -2.39 -0.02 1.01 16 46 H 0.04 1.90 7.05 -2.39 -0.02 1.88 16 47 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -62.97 366.68 2.92 -60.05 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.28 Total: 28.30 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.41 Total: 2.05 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -4.60 Total: -114.77 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.80 kcal Total: -62.97 2.92 -60.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993641986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.732 kcal (2) G-P(sol) polarization free energy of solvation -62.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds