Wall clock time and date at job start Tue Mar 31 2020 22:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.70427 * 2 1 4 4 C 1.53191 * 109.59009 * 239.63931 * 2 1 3 5 5 H 1.09003 * 109.52406 * 305.54703 * 4 2 1 6 6 N 1.46502 * 109.49759 * 65.62567 * 4 2 1 7 7 C 1.34771 * 120.00270 * 204.83668 * 6 4 2 8 8 O 1.21566 * 119.99996 * 0.02562 * 7 6 4 9 9 C 1.47769 * 120.00001 * 179.97438 * 7 6 4 10 10 C 1.40634 * 119.80310 * 359.97438 * 9 7 6 11 11 C 1.35702 * 120.91874 * 179.97438 * 10 9 7 12 12 C 1.40760 * 120.11727 * 0.09449 * 11 10 9 13 13 N 1.33643 * 120.83635 * 179.90952 * 12 11 10 14 14 C 1.31123 * 121.39190 * 180.02562 * 13 12 11 15 15 C 1.39316 * 121.77294 * 359.95814 * 14 13 12 16 16 C 1.36581 * 119.89933 * 0.06074 * 15 14 13 17 17 C 1.40889 * 118.16238 * 359.96428 * 16 15 14 18 18 C 1.38552 * 119.80500 * 180.02562 * 9 7 6 19 19 C 1.53035 * 109.31704 * 185.57949 * 4 2 1 20 20 C 1.53040 * 109.53792 * 61.36499 * 19 4 2 21 21 C 1.53197 * 109.31382 * 298.63902 * 20 19 4 22 22 N 1.46922 * 108.77350 * 54.63215 * 21 20 19 23 23 C 1.36937 * 120.62672 * 126.41739 * 22 21 20 24 24 H 1.08004 * 119.99526 * 209.00619 * 23 22 21 25 25 C 1.38813 * 120.00348 * 29.00516 * 23 22 21 26 26 N 1.31619 * 119.99599 * 15.02530 * 25 23 22 27 27 Si 1.86798 * 120.00025 * 195.01672 * 25 23 22 28 28 H 1.48501 * 109.46937 * 60.00440 * 27 25 23 29 29 H 1.48503 * 109.47275 * 180.02562 * 27 25 23 30 30 H 1.48495 * 109.47438 * 300.00310 * 27 25 23 31 31 H 1.08998 * 109.47309 * 180.35389 * 1 2 3 32 32 H 1.08993 * 109.47462 * 300.36065 * 1 2 3 33 33 H 1.09000 * 109.47012 * 60.36398 * 1 2 3 34 34 H 0.97008 * 119.99516 * 24.84043 * 6 4 2 35 35 H 1.08002 * 119.53900 * 359.97438 * 10 9 7 36 36 H 1.07998 * 119.93926 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.10849 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.04775 * 180.02562 * 15 14 13 39 39 H 1.08003 * 120.91481 * 179.97438 * 16 15 14 40 40 H 1.08000 * 120.29850 * 359.97438 * 18 9 7 41 41 H 1.09005 * 109.46659 * 181.38937 * 19 4 2 42 42 H 1.09001 * 109.46210 * 301.36107 * 19 4 2 43 43 H 1.09000 * 109.49892 * 58.58587 * 20 19 4 44 44 H 1.09004 * 109.50118 * 178.65326 * 20 19 4 45 45 H 1.09006 * 109.58411 * 174.42003 * 21 20 19 46 46 H 1.09002 * 109.58312 * 294.84167 * 21 20 19 47 47 H 0.96999 * 119.99668 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2453 5 1 1.6030 -1.7254 -1.2917 6 7 1.6706 0.0265 -2.4435 7 6 1.5505 -0.6045 -3.6283 8 8 1.7513 -1.8012 -3.7026 9 6 1.1737 0.1579 -4.8367 10 6 0.9409 1.5419 -4.7456 11 6 0.5942 2.2642 -5.8408 12 6 0.4606 1.6313 -7.0910 13 7 0.1182 2.3284 -8.1786 14 6 -0.0098 1.7499 -9.3483 15 6 0.2044 0.3839 -9.5185 16 6 0.5565 -0.3885 -8.4486 17 6 0.6926 0.2365 -7.1933 18 6 1.0509 -0.4950 -6.0525 19 6 3.5675 -0.8481 -1.1700 20 6 3.9568 -1.6657 0.0636 21 6 3.4649 -0.9469 1.3239 22 7 2.0224 -0.6995 1.1945 23 6 1.1536 -1.1126 2.1690 24 1 0.1358 -1.3671 1.9125 25 6 1.5810 -1.2044 3.4865 26 7 2.7043 -0.6261 3.8557 27 14 0.5619 -2.1482 4.7355 28 1 0.4321 -3.5624 4.3012 29 1 1.2302 -2.0963 6.0606 30 1 -0.7872 -1.5361 4.8377 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3634 0.5194 0.8867 33 1 -0.3633 0.5082 -0.8932 34 1 1.5101 0.9814 -2.3840 35 1 1.0393 2.0366 -3.7906 36 1 0.4195 3.3263 -5.7529 37 1 -0.2877 2.3488 -10.2030 38 1 0.0915 -0.0637 -10.4950 39 1 0.7262 -1.4491 -8.5618 40 1 1.2297 -1.5579 -6.1207 41 1 3.9379 -1.3450 -2.0667 42 1 4.0061 0.1472 -1.0990 43 1 3.4982 -2.6529 0.0055 44 1 5.0411 -1.7701 0.1036 45 1 3.6516 -1.5718 2.1973 46 1 3.9903 0.0020 1.4318 47 1 3.0031 -0.6905 4.7763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993725437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:17 Heat of formation + Delta-G solvation = 38.947242 kcal Electronic energy + Delta-G solvation = -28789.656138 eV Core-core repulsion = 24937.577246 eV Total energy + Delta-G solvation = -3852.078892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.20121 -39.82315 -37.87216 -36.79504 -34.44998 -33.82116 -32.63977 -31.81139 -30.96816 -30.36904 -29.10443 -26.38177 -25.20701 -24.77828 -24.16899 -22.62364 -22.04498 -20.73544 -20.69745 -19.55569 -18.43329 -17.94648 -17.23128 -16.40074 -16.09850 -15.68964 -15.06461 -14.95721 -14.74268 -14.48972 -14.38200 -14.10562 -13.77006 -13.72143 -13.65830 -13.41824 -13.36684 -12.83182 -12.58207 -12.35719 -11.93071 -11.77739 -11.70842 -11.54399 -11.13067 -10.95333 -10.92004 -10.76806 -10.59694 -10.31502 -10.15812 -10.05839 -9.98554 -9.87678 -9.65785 -9.39702 -9.16862 -8.75505 -8.56729 -8.45687 -6.69384 -5.80515 -3.25081 -0.07970 0.33862 1.59434 2.20854 3.24239 3.24871 3.37712 3.43500 3.45406 3.82664 3.89347 4.23243 4.32757 4.45746 4.49870 4.59818 4.69091 4.80168 4.87538 5.10976 5.27792 5.36238 5.40980 5.49146 5.54243 5.58342 5.62228 5.68498 5.77362 5.91856 5.94508 5.99899 6.05887 6.14056 6.19329 6.31577 6.38812 6.41197 6.51404 6.60395 6.69003 6.73892 6.83669 6.96423 7.04603 7.39270 7.51877 7.65891 7.68013 7.80018 8.32018 8.43767 9.18816 9.81353 10.37376 11.28015 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.002254 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.062424 B =12417.469204 C =12663.872058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.130 3.870 5 H 0.088 0.912 6 N -0.711 5.711 7 C 0.554 3.446 8 O -0.538 6.538 9 C -0.127 4.127 10 C -0.074 4.074 11 C -0.098 4.098 12 C 0.141 3.859 13 N -0.478 5.478 14 C 0.138 3.862 15 C -0.182 4.182 16 C -0.046 4.046 17 C -0.113 4.113 18 C -0.029 4.029 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.169 3.831 22 N -0.582 5.582 23 C -0.252 4.252 24 H 0.070 0.930 25 C 0.004 3.996 26 N -0.903 5.903 27 Si 0.903 3.097 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.396 0.604 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.019 0.981 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 4.653 -24.237 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.025 3.975 5 H 0.106 0.894 6 N -0.361 5.361 7 C 0.340 3.660 8 O -0.416 6.416 9 C -0.130 4.130 10 C -0.094 4.094 11 C -0.117 4.117 12 C 0.019 3.981 13 N -0.186 5.186 14 C -0.035 4.035 15 C -0.202 4.202 16 C -0.072 4.072 17 C -0.115 4.115 18 C -0.049 4.049 19 C -0.156 4.156 20 C -0.180 4.180 21 C 0.043 3.957 22 N -0.305 5.305 23 C -0.382 4.382 24 H 0.088 0.912 25 C -0.195 4.195 26 N -0.547 5.547 27 Si 0.733 3.267 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.231 0.769 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.177 0.823 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.037 0.963 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.939 4.716 -23.836 24.475 hybrid contribution -0.334 -0.859 0.537 1.067 sum -3.272 3.857 -23.299 23.841 Atomic orbital electron populations 1.21825 0.95626 1.01787 1.00248 1.20559 0.93259 0.93569 0.86650 0.95455 1.21853 0.95227 0.96902 0.83535 0.89428 1.46084 1.69428 1.12279 1.08277 1.18133 0.77600 0.87081 0.83142 1.90778 1.50704 1.14498 1.85658 1.20099 1.04329 0.94090 0.94470 1.21017 0.96447 0.92723 0.99195 1.20684 1.00222 1.00785 0.89966 1.19011 0.96231 0.89549 0.93265 1.68076 1.12783 1.38943 0.98788 1.23040 0.92828 0.92628 0.94997 1.21906 1.02524 0.95486 1.00287 1.21590 0.93717 1.00611 0.91238 1.18819 1.03323 0.94555 0.94836 1.21460 0.92998 1.00418 0.89987 1.21766 0.95255 1.00128 0.98418 1.22190 0.99255 0.99716 0.96845 1.20863 0.83024 0.97248 0.94538 1.44030 1.03184 1.65075 1.18200 1.19126 0.94809 1.38086 0.86155 0.91218 1.25075 0.97827 0.99633 0.96951 1.70009 1.23280 1.44392 1.17005 0.86367 0.79592 0.80213 0.80567 1.20981 1.21658 1.20888 0.92609 0.91702 0.94306 0.76946 0.84660 0.84082 0.82259 0.84291 0.83995 0.83660 0.93158 0.92718 0.92508 0.92975 0.89200 0.96285 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.84 37.15 0.29 -2.21 16 2 C 0.17 3.30 3.03 -67.60 -0.21 3.09 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.13 2.32 1.99 -67.81 -0.14 2.18 16 5 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 6 N -0.71 -10.19 4.52 -54.66 -0.25 -10.43 16 7 C 0.55 8.31 7.73 -12.37 -0.10 8.22 16 8 O -0.54 -9.97 15.97 5.31 0.08 -9.89 16 9 C -0.13 -1.53 5.87 -104.98 -0.62 -2.15 16 10 C -0.07 -0.73 9.44 -39.59 -0.37 -1.10 16 11 C -0.10 -0.97 9.95 -39.54 -0.39 -1.37 16 12 C 0.14 1.55 6.61 -84.78 -0.56 0.99 16 13 N -0.48 -5.02 10.33 -10.92 -0.11 -5.13 16 14 C 0.14 1.03 11.15 -17.45 -0.19 0.84 16 15 C -0.18 -1.16 10.03 -39.78 -0.40 -1.56 16 16 C -0.05 -0.35 9.89 -39.18 -0.39 -0.74 16 17 C -0.11 -1.17 5.74 -106.82 -0.61 -1.79 16 18 C -0.03 -0.33 9.35 -38.74 -0.36 -0.69 16 19 C -0.12 -2.08 5.46 -26.69 -0.15 -2.23 16 20 C -0.14 -2.74 6.08 -26.61 -0.16 -2.90 16 21 C 0.17 3.95 5.29 -3.71 -0.02 3.93 16 22 N -0.58 -13.97 2.99 -164.78 -0.49 -14.47 16 23 C -0.25 -6.63 8.61 -15.06 -0.13 -6.76 16 24 H 0.07 1.80 6.20 -52.48 -0.33 1.47 16 25 C 0.00 0.10 4.96 -17.43 -0.09 0.02 16 26 N -0.90 -25.56 11.14 55.49 0.62 -24.94 16 27 Si 0.90 21.40 29.58 -169.99 -5.03 16.38 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 H 0.05 1.07 7.40 -51.93 -0.38 0.69 16 32 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 33 H 0.04 0.58 7.78 -51.93 -0.40 0.17 16 34 H 0.40 4.58 6.59 -40.82 -0.27 4.31 16 35 H 0.14 1.04 6.35 -52.49 -0.33 0.71 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 39 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.15 1.58 7.62 -52.49 -0.40 1.18 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -32.20 377.49 -10.66 -42.86 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.58 Total: 4.18 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -4.59 Total: -4.24 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.23 Total: -54.98 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.20 -10.66 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993725437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.805 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds