Wall clock time and date at job start Tue Mar 31 2020 22:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.70427 * 2 1 4 4 C 1.53191 * 109.59009 * 239.63931 * 2 1 3 5 5 H 1.09003 * 109.52406 * 305.54703 * 4 2 1 6 6 N 1.46502 * 109.49759 * 65.62567 * 4 2 1 7 7 C 1.34771 * 120.00270 * 204.83668 * 6 4 2 8 8 O 1.21566 * 119.99996 * 0.02562 * 7 6 4 9 9 C 1.47769 * 120.00001 * 179.97438 * 7 6 4 10 10 C 1.40634 * 119.80310 * 359.97438 * 9 7 6 11 11 C 1.35702 * 120.91874 * 179.97438 * 10 9 7 12 12 C 1.40760 * 120.11727 * 0.09449 * 11 10 9 13 13 N 1.33643 * 120.83635 * 179.90952 * 12 11 10 14 14 C 1.31123 * 121.39190 * 180.02562 * 13 12 11 15 15 C 1.39316 * 121.77294 * 359.95814 * 14 13 12 16 16 C 1.36581 * 119.89933 * 0.06074 * 15 14 13 17 17 C 1.40889 * 118.16238 * 359.96428 * 16 15 14 18 18 C 1.38552 * 119.80500 * 180.02562 * 9 7 6 19 19 C 1.53035 * 109.31704 * 185.57949 * 4 2 1 20 20 C 1.53040 * 109.53792 * 61.36499 * 19 4 2 21 21 C 1.53197 * 109.31382 * 298.63902 * 20 19 4 22 22 N 1.46922 * 108.77350 * 54.63215 * 21 20 19 23 23 C 1.36937 * 120.62672 * 126.41739 * 22 21 20 24 24 H 1.08004 * 119.99526 * 209.00619 * 23 22 21 25 25 C 1.38813 * 120.00348 * 29.00516 * 23 22 21 26 26 N 1.31619 * 119.99599 * 15.02530 * 25 23 22 27 27 Si 1.86798 * 120.00025 * 195.01672 * 25 23 22 28 28 H 1.48501 * 109.46937 * 60.00440 * 27 25 23 29 29 H 1.48503 * 109.47275 * 180.02562 * 27 25 23 30 30 H 1.48495 * 109.47438 * 300.00310 * 27 25 23 31 31 H 1.08998 * 109.47309 * 180.35389 * 1 2 3 32 32 H 1.08993 * 109.47462 * 300.36065 * 1 2 3 33 33 H 1.09000 * 109.47012 * 60.36398 * 1 2 3 34 34 H 0.97008 * 119.99516 * 24.84043 * 6 4 2 35 35 H 1.08002 * 119.53900 * 359.97438 * 10 9 7 36 36 H 1.07998 * 119.93926 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.10849 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.04775 * 180.02562 * 15 14 13 39 39 H 1.08003 * 120.91481 * 179.97438 * 16 15 14 40 40 H 1.08000 * 120.29850 * 359.97438 * 18 9 7 41 41 H 1.09005 * 109.46659 * 181.38937 * 19 4 2 42 42 H 1.09001 * 109.46210 * 301.36107 * 19 4 2 43 43 H 1.09000 * 109.49892 * 58.58587 * 20 19 4 44 44 H 1.09004 * 109.50118 * 178.65326 * 20 19 4 45 45 H 1.09006 * 109.58411 * 174.42003 * 21 20 19 46 46 H 1.09002 * 109.58312 * 294.84167 * 21 20 19 47 47 H 0.96999 * 119.99668 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2453 5 1 1.6030 -1.7254 -1.2917 6 7 1.6706 0.0265 -2.4435 7 6 1.5505 -0.6045 -3.6283 8 8 1.7513 -1.8012 -3.7026 9 6 1.1737 0.1579 -4.8367 10 6 0.9409 1.5419 -4.7456 11 6 0.5942 2.2642 -5.8408 12 6 0.4606 1.6313 -7.0910 13 7 0.1182 2.3284 -8.1786 14 6 -0.0098 1.7499 -9.3483 15 6 0.2044 0.3839 -9.5185 16 6 0.5565 -0.3885 -8.4486 17 6 0.6926 0.2365 -7.1933 18 6 1.0509 -0.4950 -6.0525 19 6 3.5675 -0.8481 -1.1700 20 6 3.9568 -1.6657 0.0636 21 6 3.4649 -0.9469 1.3239 22 7 2.0224 -0.6995 1.1945 23 6 1.1536 -1.1126 2.1690 24 1 0.1358 -1.3671 1.9125 25 6 1.5810 -1.2044 3.4865 26 7 2.7043 -0.6261 3.8557 27 14 0.5619 -2.1482 4.7355 28 1 0.4321 -3.5624 4.3012 29 1 1.2302 -2.0963 6.0606 30 1 -0.7872 -1.5361 4.8377 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3634 0.5194 0.8867 33 1 -0.3633 0.5082 -0.8932 34 1 1.5101 0.9814 -2.3840 35 1 1.0393 2.0366 -3.7906 36 1 0.4195 3.3263 -5.7529 37 1 -0.2877 2.3488 -10.2030 38 1 0.0915 -0.0637 -10.4950 39 1 0.7262 -1.4491 -8.5618 40 1 1.2297 -1.5579 -6.1207 41 1 3.9379 -1.3450 -2.0667 42 1 4.0061 0.1472 -1.0990 43 1 3.4982 -2.6529 0.0055 44 1 5.0411 -1.7701 0.1036 45 1 3.6516 -1.5718 2.1973 46 1 3.9903 0.0020 1.4318 47 1 3.0031 -0.6905 4.7763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993725437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:16 Heat of formation + Delta-G solvation = 19.898718 kcal Electronic energy + Delta-G solvation = -28790.482144 eV Core-core repulsion = 24937.577246 eV Total energy + Delta-G solvation = -3852.904898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.95981 -41.00298 -39.33779 -37.68107 -35.97594 -34.52879 -34.27350 -33.45258 -32.00437 -31.10604 -30.62081 -27.93980 -26.91514 -25.85926 -24.85924 -23.85401 -23.05263 -22.33728 -21.90463 -21.13609 -19.41578 -18.81500 -18.27458 -17.91224 -17.19193 -16.90877 -16.62795 -16.14068 -15.66551 -15.61311 -15.47998 -15.36392 -15.15083 -14.95125 -14.84413 -14.52065 -14.41650 -14.28310 -13.98925 -13.35622 -13.25426 -13.08876 -12.80921 -12.74120 -12.67112 -12.53198 -12.46380 -12.37642 -12.01770 -11.82862 -11.77536 -11.62895 -11.60236 -11.22691 -10.99170 -10.51676 -10.51433 -10.11649 -9.81265 -9.33752 -8.65076 -7.84723 -5.30665 -0.80918 -0.34346 0.87196 1.40783 1.47359 1.50000 1.55748 2.04907 2.29678 2.54044 3.08457 3.27270 3.30725 3.54559 3.55368 3.69497 3.73747 3.89501 3.97081 4.00820 4.03654 4.05610 4.21190 4.29740 4.37318 4.50969 4.52356 4.61914 4.74711 4.78620 4.87496 4.89605 4.92258 4.96232 5.02905 5.04019 5.13431 5.19004 5.20582 5.26438 5.29490 5.44204 5.46653 5.50846 5.59944 5.70968 5.75440 5.77798 6.42390 6.52421 6.88342 7.15678 7.18902 7.87344 8.38553 9.21970 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.002254 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.062424 B =12417.469204 C =12663.872058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.165 3.835 3 H 0.036 0.964 4 C 0.147 3.853 5 H 0.059 0.941 6 N -0.700 5.700 7 C 0.558 3.442 8 O -0.579 6.579 9 C -0.144 4.144 10 C -0.071 4.071 11 C -0.102 4.102 12 C 0.124 3.876 13 N -0.508 5.508 14 C 0.139 3.861 15 C -0.171 4.171 16 C -0.054 4.054 17 C -0.130 4.130 18 C -0.029 4.029 19 C -0.110 4.110 20 C -0.130 4.130 21 C 0.175 3.825 22 N -0.600 5.600 23 C -0.253 4.253 24 H 0.072 0.928 25 C -0.049 4.049 26 N -0.933 5.933 27 Si 0.961 3.039 28 H -0.283 1.283 29 H -0.295 1.295 30 H -0.275 1.275 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.412 0.588 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.193 0.807 38 H 0.177 0.823 39 H 0.164 0.836 40 H 0.143 0.857 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.005 0.995 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 5.511 -27.304 28.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 H 0.054 0.946 4 C 0.040 3.960 5 H 0.078 0.922 6 N -0.351 5.351 7 C 0.346 3.654 8 O -0.460 6.460 9 C -0.147 4.147 10 C -0.092 4.092 11 C -0.121 4.121 12 C 0.003 3.997 13 N -0.217 5.217 14 C -0.033 4.033 15 C -0.191 4.191 16 C -0.080 4.080 17 C -0.132 4.132 18 C -0.049 4.049 19 C -0.148 4.148 20 C -0.169 4.169 21 C 0.049 3.951 22 N -0.324 5.324 23 C -0.383 4.383 24 H 0.090 0.910 25 C -0.245 4.245 26 N -0.579 5.579 27 Si 0.790 3.210 28 H -0.209 1.209 29 H -0.222 1.222 30 H -0.200 1.200 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.250 0.750 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.210 0.790 38 H 0.194 0.806 39 H 0.181 0.819 40 H 0.160 0.840 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.023 0.977 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.917 5.608 -26.937 27.792 hybrid contribution -0.080 -1.095 1.244 1.660 sum -3.996 4.512 -25.693 26.391 Atomic orbital electron populations 1.21742 0.94456 1.01115 1.01341 1.20718 0.94275 0.93567 0.85658 0.94635 1.21352 0.94979 0.95599 0.84030 0.92234 1.45829 1.69281 1.12856 1.07149 1.18527 0.76443 0.86672 0.83754 1.90755 1.52585 1.16390 1.86277 1.19883 1.06666 0.94893 0.93274 1.21121 0.96129 0.91686 1.00220 1.20892 0.99927 1.01499 0.89750 1.19294 0.96458 0.90000 0.93986 1.68129 1.14315 1.39624 0.99601 1.23742 0.90819 0.93724 0.94999 1.22325 1.00387 0.94902 1.01452 1.21944 0.93472 1.01961 0.90619 1.18977 1.04025 0.94612 0.95573 1.21535 0.92626 1.00411 0.90318 1.21692 0.95256 1.00444 0.97450 1.22026 1.00332 0.98739 0.95827 1.20660 0.83134 0.96205 0.95073 1.44267 1.03171 1.65883 1.19077 1.19406 0.95137 1.37024 0.86734 0.91034 1.25757 0.99056 1.00965 0.98695 1.70152 1.24844 1.46058 1.16855 0.85437 0.78465 0.78934 0.78189 1.20900 1.22160 1.20046 0.94083 0.93126 0.90670 0.75045 0.82627 0.82667 0.79027 0.80577 0.81890 0.83967 0.92657 0.91440 0.93762 0.90916 0.92541 0.97701 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 7.84 71.98 0.56 -4.03 16 2 C 0.16 6.40 3.03 44.97 0.14 6.54 16 3 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.15 5.15 1.99 45.07 0.09 5.24 16 5 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 6 N -0.70 -19.19 4.52 -445.12 -2.01 -21.20 16 7 C 0.56 16.40 7.73 86.76 0.67 17.07 16 8 O -0.58 -21.61 15.97 -3.92 -0.06 -21.67 16 9 C -0.14 -3.37 5.87 -20.10 -0.12 -3.48 16 10 C -0.07 -1.31 9.44 22.27 0.21 -1.10 16 11 C -0.10 -1.88 9.95 22.30 0.22 -1.66 16 12 C 0.12 2.54 6.61 40.36 0.27 2.81 16 13 N -0.51 -9.64 10.33 -188.45 -1.95 -11.58 16 14 C 0.14 1.65 11.15 85.06 0.95 2.60 16 15 C -0.17 -1.56 10.03 22.14 0.22 -1.34 16 16 C -0.05 -0.71 9.89 22.53 0.22 -0.49 16 17 C -0.13 -2.52 5.74 -21.29 -0.12 -2.64 16 18 C -0.03 -0.64 9.35 22.82 0.21 -0.43 16 19 C -0.11 -3.82 5.46 30.62 0.17 -3.65 16 20 C -0.13 -5.08 6.08 30.67 0.19 -4.89 16 21 C 0.17 8.38 5.29 86.36 0.46 8.83 16 22 N -0.60 -29.27 2.99 -675.23 -2.02 -31.28 16 23 C -0.25 -13.51 8.61 84.03 0.72 -12.78 16 24 H 0.07 3.73 6.20 -2.91 -0.02 3.71 16 25 C -0.05 -2.72 4.96 84.86 0.42 -2.30 16 26 N -0.93 -54.35 11.14 21.65 0.24 -54.11 16 27 Si 0.96 44.80 29.58 68.60 2.03 46.83 16 28 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 29 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 30 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 31 H 0.04 1.56 7.40 -2.39 -0.02 1.55 16 32 H 0.05 1.93 7.66 -2.39 -0.02 1.91 16 33 H 0.07 2.09 7.78 -2.39 -0.02 2.07 16 34 H 0.41 8.63 6.59 -92.70 -0.61 8.02 16 35 H 0.16 2.03 6.35 -2.91 -0.02 2.01 16 36 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 37 H 0.19 0.85 8.06 -2.91 -0.02 0.82 16 38 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 39 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 40 H 0.14 3.10 7.62 -2.91 -0.02 3.08 16 41 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 45 H 0.06 3.08 6.06 -2.38 -0.01 3.06 16 46 H 0.00 0.24 8.14 -2.39 -0.02 0.23 16 47 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -72.10 377.49 2.09 -70.01 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.38 Total: 18.73 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 5.48 Total: 4.29 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -5.74 Total: -118.18 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.06 Total: -21.67 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -72.10 2.09 -70.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993725437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.907 kcal (2) G-P(sol) polarization free energy of solvation -72.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds