Wall clock time and date at job start Tue Mar 31 2020 22:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.58568 * 2 1 4 4 C 1.53200 * 109.58350 * 239.71869 * 2 1 3 5 5 H 1.09000 * 109.49885 * 65.45178 * 4 2 1 6 6 N 1.46495 * 109.49534 * 305.38595 * 4 2 1 7 7 C 1.34778 * 120.00034 * 155.34356 * 6 4 2 8 8 O 1.21564 * 119.99888 * 359.72297 * 7 6 4 9 9 C 1.47765 * 120.00176 * 179.72147 * 7 6 4 10 10 C 1.40631 * 119.80681 * 359.72706 * 9 7 6 11 11 C 1.35699 * 120.92340 * 179.77164 * 10 9 7 12 12 C 1.40756 * 120.10855 * 0.47755 * 11 10 9 13 13 N 1.33653 * 120.82916 * 179.78444 * 12 11 10 14 14 C 1.31118 * 121.39643 * 180.02562 * 13 12 11 15 15 C 1.39317 * 121.76761 * 359.97438 * 14 13 12 16 16 C 1.36580 * 119.90352 * 359.97438 * 15 14 13 17 17 C 1.40888 * 118.16087 * 359.97438 * 16 15 14 18 18 C 1.38550 * 119.80399 * 179.97438 * 9 7 6 19 19 C 1.53044 * 109.33496 * 185.41906 * 4 2 1 20 20 C 1.53100 * 109.50315 * 61.34573 * 19 4 2 21 21 C 1.53191 * 109.33238 * 298.65720 * 20 19 4 22 22 N 1.46918 * 108.77629 * 54.63569 * 21 20 19 23 23 C 1.36945 * 120.63051 * 126.41477 * 22 21 20 24 24 H 1.07999 * 119.99830 * 221.17085 * 23 22 21 25 25 C 1.38810 * 120.00099 * 41.16805 * 23 22 21 26 26 N 1.31612 * 119.99961 * 214.89610 * 25 23 22 27 27 Si 1.86805 * 119.99756 * 34.90143 * 25 23 22 28 28 H 1.48496 * 109.47198 * 84.62435 * 27 25 23 29 29 H 1.48499 * 109.46966 * 204.62579 * 27 25 23 30 30 H 1.48497 * 109.47241 * 324.62079 * 27 25 23 31 31 H 1.08993 * 109.47202 * 180.28160 * 1 2 3 32 32 H 1.09003 * 109.47075 * 300.28190 * 1 2 3 33 33 H 1.08998 * 109.46859 * 60.28088 * 1 2 3 34 34 H 0.96998 * 120.00481 * 335.06459 * 6 4 2 35 35 H 1.08005 * 119.53506 * 359.97438 * 10 9 7 36 36 H 1.07996 * 119.94298 * 180.25858 * 11 10 9 37 37 H 1.08006 * 119.11822 * 180.02562 * 14 13 12 38 38 H 1.07999 * 120.04712 * 179.97438 * 15 14 13 39 39 H 1.08000 * 120.92036 * 180.02562 * 16 15 14 40 40 H 1.08006 * 120.29972 * 359.96020 * 18 9 7 41 41 H 1.09001 * 109.45431 * 181.39943 * 19 4 2 42 42 H 1.08998 * 109.45963 * 301.35914 * 19 4 2 43 43 H 1.09003 * 109.48848 * 178.69483 * 20 19 4 44 44 H 1.09008 * 109.51782 * 58.63151 * 20 19 4 45 45 H 1.09001 * 109.58697 * 294.84193 * 21 20 19 46 46 H 1.09009 * 109.70304 * 174.49096 * 21 20 19 47 47 H 0.97003 * 119.99637 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2464 5 1 1.7633 -0.1657 -2.1373 6 7 1.4540 -2.0675 -1.3080 7 6 1.3371 -2.6985 -2.4932 8 8 1.7163 -2.1539 -3.5117 9 6 0.7481 -4.0523 -2.5545 10 6 0.3160 -4.6809 -1.3730 11 6 -0.2323 -5.9217 -1.4036 12 6 -0.3672 -6.6041 -2.6273 13 7 -0.9012 -7.8284 -2.6736 14 6 -1.0317 -8.4743 -3.8071 15 6 -0.6226 -7.9204 -5.0182 16 6 -0.0693 -6.6720 -5.0436 17 6 0.0682 -5.9807 -3.8237 18 6 0.6294 -4.6970 -3.7751 19 6 3.5679 -0.8433 -1.1738 20 6 3.9604 -1.6608 0.0598 21 6 3.4685 -0.9436 1.3209 22 7 2.0255 -0.6991 1.1935 23 6 1.1586 -1.1144 2.1689 24 1 0.2110 -1.5554 1.8971 25 6 1.4979 -0.9685 3.5070 26 7 1.1200 -1.8740 4.3842 27 14 2.4908 0.5130 4.0626 28 1 1.5769 1.6574 4.3085 29 1 3.2165 0.1811 5.3149 30 1 3.4683 0.8783 3.0061 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3633 0.5182 0.8875 33 1 -0.3633 0.5095 -0.8925 34 1 1.1514 -2.5021 -0.4953 35 1 0.4192 -4.1674 -0.4284 36 1 -0.5626 -6.3879 -0.4871 37 1 -1.4688 -9.4620 -3.8020 38 1 -0.7428 -8.4774 -5.9357 39 1 0.2532 -6.2267 -5.9732 40 1 0.9647 -4.2143 -4.6812 41 1 3.9376 -1.3389 -2.0715 42 1 4.0046 0.1528 -1.1031 43 1 5.0449 -1.7626 0.0986 44 1 3.5041 -2.6491 0.0020 45 1 3.9921 0.0064 1.4287 46 1 3.6578 -1.5663 2.1953 47 1 1.3568 -1.7719 5.3193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993725440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:21 Heat of formation + Delta-G solvation = 41.754860 kcal Electronic energy + Delta-G solvation = -29605.808433 eV Core-core repulsion = 25753.851288 eV Total energy + Delta-G solvation = -3851.957145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.04138 -39.84428 -37.97961 -36.64740 -34.10024 -33.65066 -32.68384 -31.87225 -31.01994 -30.20124 -29.72661 -26.54579 -25.09228 -24.74536 -23.98721 -22.56242 -22.07469 -21.23764 -20.59728 -19.00570 -18.40728 -17.85537 -17.04640 -16.52677 -16.02302 -15.44890 -15.15300 -14.96909 -14.63313 -14.45067 -14.29334 -14.18430 -13.85817 -13.54405 -13.49752 -13.40790 -13.27702 -13.09004 -12.53430 -12.27462 -12.17960 -11.84857 -11.70239 -11.56920 -11.35214 -11.24297 -10.81294 -10.79320 -10.69641 -10.57563 -10.30977 -9.99362 -9.75622 -9.71798 -9.68773 -9.51647 -9.00382 -8.65857 -8.42695 -8.37746 -6.79926 -6.16708 -3.48448 0.08308 0.51693 1.75688 2.38571 3.35917 3.38601 3.44971 3.47101 3.52124 3.99893 4.07459 4.39002 4.48832 4.51054 4.63585 4.76803 4.85426 4.88111 5.01333 5.06841 5.16480 5.27559 5.40632 5.43919 5.53601 5.58452 5.71107 5.75674 5.79408 5.87307 5.97993 6.08880 6.10467 6.17791 6.20578 6.29741 6.31263 6.33413 6.40823 6.47755 6.56236 6.60861 6.75680 6.85107 6.88032 6.96070 7.06085 7.68876 7.89634 7.94873 8.30794 8.48146 8.91122 9.63421 10.11985 10.98186 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.003125 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.066640 B = 8957.493339 C = 9946.619282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.155 3.845 3 H 0.042 0.958 4 C 0.134 3.866 5 H 0.080 0.920 6 N -0.693 5.693 7 C 0.553 3.447 8 O -0.552 6.552 9 C -0.124 4.124 10 C -0.070 4.070 11 C -0.096 4.096 12 C 0.142 3.858 13 N -0.476 5.476 14 C 0.135 3.865 15 C -0.184 4.184 16 C -0.047 4.047 17 C -0.114 4.114 18 C -0.033 4.033 19 C -0.122 4.122 20 C -0.135 4.135 21 C 0.143 3.857 22 N -0.595 5.595 23 C -0.283 4.283 24 H 0.078 0.922 25 C 0.055 3.945 26 N -0.876 5.876 27 Si 0.843 3.157 28 H -0.289 1.289 29 H -0.298 1.298 30 H -0.260 1.260 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.411 0.589 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.024 0.976 46 H 0.067 0.933 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 -8.510 -16.711 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.048 3.952 3 H 0.059 0.941 4 C 0.028 3.972 5 H 0.098 0.902 6 N -0.344 5.344 7 C 0.340 3.660 8 O -0.432 6.432 9 C -0.127 4.127 10 C -0.091 4.091 11 C -0.115 4.115 12 C 0.020 3.980 13 N -0.184 5.184 14 C -0.037 4.037 15 C -0.204 4.204 16 C -0.073 4.073 17 C -0.116 4.116 18 C -0.053 4.053 19 C -0.161 4.161 20 C -0.174 4.174 21 C 0.017 3.983 22 N -0.320 5.320 23 C -0.410 4.410 24 H 0.095 0.905 25 C -0.149 4.149 26 N -0.514 5.514 27 Si 0.670 3.330 28 H -0.216 1.216 29 H -0.225 1.225 30 H -0.185 1.185 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.249 0.751 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.176 0.824 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.459 -8.462 -16.326 18.446 hybrid contribution 0.726 1.021 0.153 1.262 sum -0.733 -7.440 -16.173 17.817 Atomic orbital electron populations 1.21746 0.94925 1.01911 1.00530 1.20867 0.94013 0.93743 0.86535 0.94054 1.21531 0.92795 0.82961 0.99891 0.90209 1.45959 1.61070 1.18342 1.09067 1.18160 0.78808 0.85060 0.84020 1.90726 1.50810 1.67277 1.34396 1.20088 1.02934 0.95572 0.94141 1.21157 0.95074 0.94727 0.98117 1.20734 0.99630 0.94339 0.96773 1.19030 0.95212 0.90738 0.92976 1.68081 1.13695 1.07368 1.29224 1.23023 0.93911 0.99226 0.87587 1.21877 1.01715 0.96807 0.99977 1.21548 0.94449 0.94088 0.97211 1.18801 1.02419 0.95972 0.94449 1.21401 0.93874 0.91995 0.98028 1.21794 0.95573 1.00458 0.98245 1.22012 0.99167 0.99832 0.96379 1.21308 0.84604 0.96817 0.95539 1.44428 1.02470 1.65293 1.19801 1.18534 1.02520 1.35659 0.84293 0.90502 1.25573 0.96671 0.96686 0.95941 1.70062 1.46794 1.31204 1.03379 0.87384 0.80733 0.86779 0.78064 1.21567 1.22501 1.18478 0.92528 0.91528 0.94127 0.75089 0.84104 0.83922 0.82356 0.84445 0.84173 0.83866 0.92614 0.91773 0.93086 0.92101 0.95776 0.91465 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 7.85 37.16 0.29 -2.02 16 2 C 0.15 2.81 3.19 -67.60 -0.22 2.59 16 3 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.13 2.22 2.32 -67.81 -0.16 2.06 16 5 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 6 N -0.69 -11.12 3.42 -54.65 -0.19 -11.30 16 7 C 0.55 8.90 7.73 -12.37 -0.10 8.80 16 8 O -0.55 -10.13 15.97 5.31 0.08 -10.04 16 9 C -0.12 -1.75 5.87 -104.98 -0.62 -2.37 16 10 C -0.07 -0.94 9.44 -39.59 -0.37 -1.32 16 11 C -0.10 -1.26 9.95 -39.54 -0.39 -1.65 16 12 C 0.14 1.87 6.61 -84.78 -0.56 1.31 16 13 N -0.48 -5.95 10.33 -10.91 -0.11 -6.06 16 14 C 0.14 1.23 11.15 -17.45 -0.19 1.04 16 15 C -0.18 -1.42 10.03 -39.78 -0.40 -1.82 16 16 C -0.05 -0.42 9.89 -39.18 -0.39 -0.81 16 17 C -0.11 -1.37 5.74 -106.82 -0.61 -1.99 16 18 C -0.03 -0.42 9.35 -38.74 -0.36 -0.78 16 19 C -0.12 -1.96 5.58 -26.66 -0.15 -2.11 16 20 C -0.13 -2.29 5.93 -26.58 -0.16 -2.45 16 21 C 0.14 2.86 4.60 -3.72 -0.02 2.84 16 22 N -0.60 -12.50 2.12 -164.77 -0.35 -12.85 16 23 C -0.28 -6.93 8.44 -15.06 -0.13 -7.06 16 24 H 0.08 2.00 6.82 -52.49 -0.36 1.64 16 25 C 0.05 1.45 4.82 -17.43 -0.08 1.36 16 26 N -0.88 -24.67 13.97 55.49 0.78 -23.90 16 27 Si 0.84 20.36 27.39 -169.99 -4.66 15.71 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.26 -6.03 5.24 56.52 0.30 -5.73 16 31 H 0.06 1.00 6.37 -51.93 -0.33 0.66 16 32 H 0.07 1.25 7.72 -51.93 -0.40 0.85 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.41 6.78 5.77 -40.82 -0.24 6.54 16 35 H 0.14 1.87 6.35 -52.48 -0.33 1.53 16 36 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.16 0.92 8.06 -52.48 -0.42 0.49 16 38 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.14 1.69 7.62 -52.48 -0.40 1.30 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.07 7.53 -51.92 -0.39 0.68 16 45 H 0.02 0.50 6.71 -51.93 -0.35 0.15 16 46 H 0.07 1.47 7.01 -51.92 -0.36 1.11 16 47 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -30.07 371.86 -10.05 -40.12 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.60 Total: 7.09 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -4.61 Total: -4.36 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.13 Total: -54.12 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.66 Total: 15.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.07 -10.05 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993725440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.875 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds