Wall clock time and date at job start Tue Mar 31 2020 22:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.58568 * 2 1 4 4 C 1.53200 * 109.58350 * 239.71869 * 2 1 3 5 5 H 1.09000 * 109.49885 * 65.45178 * 4 2 1 6 6 N 1.46495 * 109.49534 * 305.38595 * 4 2 1 7 7 C 1.34778 * 120.00034 * 155.34356 * 6 4 2 8 8 O 1.21564 * 119.99888 * 359.72297 * 7 6 4 9 9 C 1.47765 * 120.00176 * 179.72147 * 7 6 4 10 10 C 1.40631 * 119.80681 * 359.72706 * 9 7 6 11 11 C 1.35699 * 120.92340 * 179.77164 * 10 9 7 12 12 C 1.40756 * 120.10855 * 0.47755 * 11 10 9 13 13 N 1.33653 * 120.82916 * 179.78444 * 12 11 10 14 14 C 1.31118 * 121.39643 * 180.02562 * 13 12 11 15 15 C 1.39317 * 121.76761 * 359.97438 * 14 13 12 16 16 C 1.36580 * 119.90352 * 359.97438 * 15 14 13 17 17 C 1.40888 * 118.16087 * 359.97438 * 16 15 14 18 18 C 1.38550 * 119.80399 * 179.97438 * 9 7 6 19 19 C 1.53044 * 109.33496 * 185.41906 * 4 2 1 20 20 C 1.53100 * 109.50315 * 61.34573 * 19 4 2 21 21 C 1.53191 * 109.33238 * 298.65720 * 20 19 4 22 22 N 1.46918 * 108.77629 * 54.63569 * 21 20 19 23 23 C 1.36945 * 120.63051 * 126.41477 * 22 21 20 24 24 H 1.07999 * 119.99830 * 221.17085 * 23 22 21 25 25 C 1.38810 * 120.00099 * 41.16805 * 23 22 21 26 26 N 1.31612 * 119.99961 * 214.89610 * 25 23 22 27 27 Si 1.86805 * 119.99756 * 34.90143 * 25 23 22 28 28 H 1.48496 * 109.47198 * 84.62435 * 27 25 23 29 29 H 1.48499 * 109.46966 * 204.62579 * 27 25 23 30 30 H 1.48497 * 109.47241 * 324.62079 * 27 25 23 31 31 H 1.08993 * 109.47202 * 180.28160 * 1 2 3 32 32 H 1.09003 * 109.47075 * 300.28190 * 1 2 3 33 33 H 1.08998 * 109.46859 * 60.28088 * 1 2 3 34 34 H 0.96998 * 120.00481 * 335.06459 * 6 4 2 35 35 H 1.08005 * 119.53506 * 359.97438 * 10 9 7 36 36 H 1.07996 * 119.94298 * 180.25858 * 11 10 9 37 37 H 1.08006 * 119.11822 * 180.02562 * 14 13 12 38 38 H 1.07999 * 120.04712 * 179.97438 * 15 14 13 39 39 H 1.08000 * 120.92036 * 180.02562 * 16 15 14 40 40 H 1.08006 * 120.29972 * 359.96020 * 18 9 7 41 41 H 1.09001 * 109.45431 * 181.39943 * 19 4 2 42 42 H 1.08998 * 109.45963 * 301.35914 * 19 4 2 43 43 H 1.09003 * 109.48848 * 178.69483 * 20 19 4 44 44 H 1.09008 * 109.51782 * 58.63151 * 20 19 4 45 45 H 1.09001 * 109.58697 * 294.84193 * 21 20 19 46 46 H 1.09009 * 109.70304 * 174.49096 * 21 20 19 47 47 H 0.97003 * 119.99637 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2464 5 1 1.7633 -0.1657 -2.1373 6 7 1.4540 -2.0675 -1.3080 7 6 1.3371 -2.6985 -2.4932 8 8 1.7163 -2.1539 -3.5117 9 6 0.7481 -4.0523 -2.5545 10 6 0.3160 -4.6809 -1.3730 11 6 -0.2323 -5.9217 -1.4036 12 6 -0.3672 -6.6041 -2.6273 13 7 -0.9012 -7.8284 -2.6736 14 6 -1.0317 -8.4743 -3.8071 15 6 -0.6226 -7.9204 -5.0182 16 6 -0.0693 -6.6720 -5.0436 17 6 0.0682 -5.9807 -3.8237 18 6 0.6294 -4.6970 -3.7751 19 6 3.5679 -0.8433 -1.1738 20 6 3.9604 -1.6608 0.0598 21 6 3.4685 -0.9436 1.3209 22 7 2.0255 -0.6991 1.1935 23 6 1.1586 -1.1144 2.1689 24 1 0.2110 -1.5554 1.8971 25 6 1.4979 -0.9685 3.5070 26 7 1.1200 -1.8740 4.3842 27 14 2.4908 0.5130 4.0626 28 1 1.5769 1.6574 4.3085 29 1 3.2165 0.1811 5.3149 30 1 3.4683 0.8783 3.0061 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3633 0.5182 0.8875 33 1 -0.3633 0.5095 -0.8925 34 1 1.1514 -2.5021 -0.4953 35 1 0.4192 -4.1674 -0.4284 36 1 -0.5626 -6.3879 -0.4871 37 1 -1.4688 -9.4620 -3.8020 38 1 -0.7428 -8.4774 -5.9357 39 1 0.2532 -6.2267 -5.9732 40 1 0.9647 -4.2143 -4.6812 41 1 3.9376 -1.3389 -2.0715 42 1 4.0046 0.1528 -1.1031 43 1 5.0449 -1.7626 0.0986 44 1 3.5041 -2.6491 0.0020 45 1 3.9921 0.0064 1.4287 46 1 3.6578 -1.5663 2.1953 47 1 1.3568 -1.7719 5.3193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993725440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:20 Heat of formation + Delta-G solvation = 25.257540 kcal Electronic energy + Delta-G solvation = -29606.523810 eV Core-core repulsion = 25753.851288 eV Total energy + Delta-G solvation = -3852.672522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.96652 -41.07886 -39.35621 -37.66677 -35.63716 -34.53133 -34.20212 -33.49439 -32.28628 -31.14292 -30.98101 -28.01610 -26.68338 -25.88206 -24.85976 -23.95276 -23.14042 -22.52304 -22.01756 -20.45398 -19.47960 -18.85145 -18.37637 -17.81373 -17.12059 -16.81519 -16.71026 -16.26330 -15.88883 -15.50162 -15.42191 -15.40717 -15.14798 -14.92663 -14.78131 -14.51441 -14.44416 -14.30170 -13.99205 -13.86742 -13.49239 -13.07080 -12.85898 -12.78871 -12.68249 -12.62610 -12.46513 -12.32854 -12.15760 -11.91479 -11.60557 -11.55970 -11.46444 -11.13075 -11.00943 -10.50055 -10.43369 -10.04354 -9.79298 -9.34174 -8.59711 -8.20748 -5.46794 -0.79604 -0.35174 0.88325 1.40278 1.41350 1.49528 1.55554 2.22237 2.32264 2.51635 3.00695 3.08438 3.27155 3.40002 3.54467 3.65785 3.73600 3.94786 3.98465 4.01751 4.04219 4.05882 4.15203 4.29984 4.32580 4.52665 4.53818 4.63380 4.67736 4.76251 4.86630 4.91619 4.93509 4.96188 4.99305 5.03033 5.09522 5.13562 5.20643 5.26030 5.27002 5.31820 5.43936 5.47884 5.50428 5.66322 5.75834 5.98483 6.31651 6.59808 6.89997 7.05351 7.20207 7.70122 8.20770 8.98232 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.003125 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.066640 B = 8957.493339 C = 9946.619282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.154 3.846 3 H 0.052 0.948 4 C 0.139 3.861 5 H 0.086 0.914 6 N -0.694 5.694 7 C 0.557 3.443 8 O -0.576 6.576 9 C -0.147 4.147 10 C -0.075 4.075 11 C -0.107 4.107 12 C 0.125 3.875 13 N -0.513 5.513 14 C 0.138 3.862 15 C -0.170 4.170 16 C -0.050 4.050 17 C -0.129 4.129 18 C -0.022 4.022 19 C -0.116 4.116 20 C -0.124 4.124 21 C 0.141 3.859 22 N -0.602 5.602 23 C -0.253 4.253 24 H 0.056 0.944 25 C 0.005 3.995 26 N -0.923 5.923 27 Si 0.893 3.107 28 H -0.298 1.298 29 H -0.309 1.309 30 H -0.242 1.242 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.407 0.593 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.193 0.807 38 H 0.181 0.819 39 H 0.170 0.830 40 H 0.153 0.847 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.050 0.950 45 H 0.029 0.971 46 H 0.043 0.957 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 -9.150 -20.150 22.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.070 0.930 4 C 0.033 3.967 5 H 0.104 0.896 6 N -0.344 5.344 7 C 0.346 3.654 8 O -0.458 6.458 9 C -0.150 4.150 10 C -0.095 4.095 11 C -0.126 4.126 12 C 0.005 3.995 13 N -0.221 5.221 14 C -0.034 4.034 15 C -0.189 4.189 16 C -0.075 4.075 17 C -0.131 4.131 18 C -0.042 4.042 19 C -0.155 4.155 20 C -0.163 4.163 21 C 0.016 3.984 22 N -0.328 5.328 23 C -0.382 4.382 24 H 0.074 0.926 25 C -0.194 4.194 26 N -0.565 5.565 27 Si 0.721 3.279 28 H -0.225 1.225 29 H -0.236 1.236 30 H -0.166 1.166 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.245 0.755 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.210 0.790 38 H 0.198 0.802 39 H 0.188 0.812 40 H 0.171 0.829 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.960 -9.079 -19.799 21.802 hybrid contribution 0.478 1.030 1.030 1.533 sum -0.482 -8.049 -18.769 20.428 Atomic orbital electron populations 1.21682 0.94541 1.01454 1.00883 1.21004 0.94408 0.94076 0.85704 0.93028 1.21442 0.93251 0.83063 0.98932 0.89583 1.45956 1.61108 1.18245 1.09072 1.18363 0.78146 0.85516 0.83420 1.90699 1.52085 1.68058 1.34939 1.19948 1.04962 0.95053 0.95015 1.21016 0.95808 0.94971 0.97698 1.20804 1.00013 0.94390 0.97386 1.19168 0.95709 0.91409 0.93254 1.68109 1.15303 1.07473 1.31254 1.23773 0.92159 1.00123 0.87299 1.22344 0.99370 0.96236 1.00982 1.21958 0.94025 0.94507 0.97040 1.18998 1.02732 0.95894 0.95483 1.21552 0.92793 0.92196 0.97666 1.21755 0.95042 1.01069 0.97587 1.21878 1.00324 0.98945 0.95181 1.21297 0.83938 0.96867 0.96259 1.44503 1.02596 1.65897 1.19774 1.18467 1.01785 1.33193 0.84792 0.92618 1.26005 0.98587 0.98449 0.96379 1.70149 1.49937 1.32941 1.03465 0.86568 0.79688 0.83945 0.77653 1.22540 1.23639 1.16624 0.93421 0.93347 0.91552 0.75512 0.84995 0.83957 0.79030 0.80195 0.81213 0.82938 0.92344 0.90283 0.90941 0.93167 0.95345 0.93816 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 7.85 71.98 0.57 -3.81 16 2 C 0.15 5.39 3.19 44.98 0.14 5.53 16 3 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.14 4.39 2.32 45.07 0.10 4.50 16 5 H 0.09 2.68 7.58 -2.39 -0.02 2.66 16 6 N -0.69 -22.15 3.42 -445.10 -1.52 -23.67 16 7 C 0.56 17.83 7.73 86.76 0.67 18.50 16 8 O -0.58 -20.62 15.97 -3.92 -0.06 -20.68 16 9 C -0.15 -4.19 5.87 -20.10 -0.12 -4.31 16 10 C -0.07 -2.10 9.44 22.27 0.21 -1.89 16 11 C -0.11 -2.93 9.95 22.30 0.22 -2.71 16 12 C 0.13 3.27 6.61 40.35 0.27 3.54 16 13 N -0.51 -12.26 10.33 -188.45 -1.95 -14.21 16 14 C 0.14 2.10 11.15 85.06 0.95 3.05 16 15 C -0.17 -1.89 10.03 22.14 0.22 -1.67 16 16 C -0.05 -0.73 9.89 22.53 0.22 -0.51 16 17 C -0.13 -2.92 5.74 -21.29 -0.12 -3.04 16 18 C -0.02 -0.55 9.35 22.82 0.21 -0.34 16 19 C -0.12 -3.48 5.58 30.64 0.17 -3.30 16 20 C -0.12 -4.04 5.93 30.69 0.18 -3.86 16 21 C 0.14 5.54 4.60 86.36 0.40 5.94 16 22 N -0.60 -25.13 2.12 -675.22 -1.43 -26.56 16 23 C -0.25 -12.68 8.44 84.03 0.71 -11.97 16 24 H 0.06 3.01 6.82 -2.91 -0.02 2.99 16 25 C 0.01 0.27 4.82 84.86 0.41 0.68 16 26 N -0.92 -53.93 13.97 21.65 0.30 -53.63 16 27 Si 0.89 42.70 27.39 68.60 1.88 44.58 16 28 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 29 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 30 H -0.24 -10.72 5.24 99.48 0.52 -10.20 16 31 H 0.05 1.70 6.37 -2.39 -0.02 1.68 16 32 H 0.05 1.81 7.72 -2.39 -0.02 1.80 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.41 13.78 5.77 -92.71 -0.53 13.25 16 35 H 0.13 3.81 6.35 -2.91 -0.02 3.79 16 36 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 37 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.15 3.39 7.62 -2.91 -0.02 3.37 16 41 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 44 H 0.05 1.74 7.53 -2.38 -0.02 1.72 16 45 H 0.03 1.11 6.71 -2.39 -0.02 1.09 16 46 H 0.04 1.91 7.01 -2.38 -0.02 1.90 16 47 H 0.26 14.70 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -66.58 371.86 2.91 -63.67 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.28 Total: 26.18 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 5.42 Total: 4.33 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -4.60 Total: -118.07 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.06 Total: -20.68 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Total: -66.58 2.91 -63.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993725440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.924 kcal (2) G-P(sol) polarization free energy of solvation -66.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds