Wall clock time and date at job start Tue Mar 31 2020 22:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.70184 * 2 1 4 4 C 1.53200 * 109.58627 * 120.35469 * 2 1 3 5 5 H 1.08998 * 109.52162 * 54.45000 * 4 2 1 6 6 N 1.46501 * 109.49475 * 294.37632 * 4 2 1 7 7 C 1.34773 * 119.99850 * 155.16178 * 6 4 2 8 8 O 1.21537 * 120.00480 * 359.97438 * 7 6 4 9 9 C 1.47956 * 119.99751 * 179.97438 * 7 6 4 10 10 N 1.32197 * 120.15890 * 5.62757 * 9 7 6 11 11 C 1.32021 * 122.68323 * 180.02562 * 10 9 7 12 12 C 1.36687 * 122.02964 * 0.02562 * 11 10 9 13 13 C 1.40533 * 118.84534 * 359.97438 * 12 11 10 14 14 C 1.40325 * 122.22686 * 180.02562 * 13 12 11 15 15 C 1.36202 * 119.45354 * 179.97438 * 14 13 12 16 16 C 1.39382 * 121.00737 * 359.94510 * 15 14 13 17 17 C 1.36262 * 121.07851 * 0.02562 * 16 15 14 18 18 C 1.40090 * 119.53767 * 359.97438 * 17 16 15 19 19 C 1.53038 * 109.31353 * 174.42295 * 4 2 1 20 20 C 1.53043 * 109.53586 * 298.63557 * 19 4 2 21 21 C 1.53192 * 109.31699 * 61.36369 * 20 19 4 22 22 N 1.46927 * 109.58494 * 239.63981 * 2 1 3 23 23 C 1.36933 * 120.63171 * 6.61139 * 22 2 1 24 24 H 1.08003 * 119.99916 * 330.55018 * 23 22 2 25 25 C 1.38818 * 120.00025 * 150.56211 * 23 22 2 26 26 N 1.31611 * 119.99972 * 344.69867 * 25 23 22 27 27 Si 1.86795 * 119.99892 * 164.70278 * 25 23 22 28 28 H 1.48498 * 109.47686 * 59.99404 * 27 25 23 29 29 H 1.48497 * 109.47032 * 179.97438 * 27 25 23 30 30 H 1.48508 * 109.47172 * 299.99645 * 27 25 23 31 31 H 1.08997 * 109.47167 * 299.64813 * 1 2 3 32 32 H 1.09000 * 109.47202 * 59.64961 * 1 2 3 33 33 H 1.09003 * 109.47660 * 179.64692 * 1 2 3 34 34 H 0.97002 * 119.99910 * 335.15295 * 6 4 2 35 35 H 1.08000 * 118.98839 * 180.02562 * 11 10 9 36 36 H 1.07999 * 120.57938 * 179.70403 * 12 11 10 37 37 H 1.07996 * 120.27113 * 359.97438 * 14 13 12 38 38 H 1.08005 * 119.49517 * 179.97438 * 15 14 13 39 39 H 1.07993 * 119.46520 * 180.02562 * 16 15 14 40 40 H 1.07997 * 120.23374 * 179.97438 * 17 16 15 41 41 H 1.08994 * 109.45906 * 58.65305 * 19 4 2 42 42 H 1.08995 * 109.46046 * 178.61606 * 19 4 2 43 43 H 1.09004 * 109.49842 * 181.31988 * 20 19 4 44 44 H 1.09003 * 109.49645 * 301.41446 * 20 19 4 45 45 H 1.09001 * 109.58520 * 65.14993 * 21 20 19 46 46 H 1.08991 * 109.58632 * 185.57626 * 21 20 19 47 47 H 0.96998 * 120.00217 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2455 5 1 1.6029 -1.7253 1.2920 6 7 1.6704 0.0267 2.4435 7 6 1.5502 -0.6043 3.6283 8 8 1.7509 -1.8006 3.7029 9 6 1.1740 0.1595 4.8384 10 7 0.8469 1.4368 4.7425 11 6 0.5039 2.1653 5.7888 12 6 0.4636 1.6455 7.0523 13 6 0.7975 0.2934 7.2401 14 6 0.7794 -0.3131 8.5054 15 6 1.1131 -1.6284 8.6225 16 6 1.4708 -2.3807 7.5050 17 6 1.4983 -1.8238 6.2616 18 6 1.1613 -0.4734 6.1021 19 6 3.5674 -0.8480 1.1703 20 6 3.9568 -1.6657 -0.0634 21 6 3.4650 -0.9471 -1.3237 22 7 2.0225 -0.6997 -1.1944 23 6 1.1536 -1.1131 -2.1687 24 1 0.1378 -1.3742 -1.9110 25 6 1.5786 -1.1970 -3.4876 26 7 2.6950 -0.6067 -3.8580 27 14 0.5656 -2.1475 -4.7365 28 1 -0.7897 -1.5485 -4.8337 29 1 1.2301 -2.0851 -6.0631 30 1 0.4510 -3.5641 -4.3059 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3634 -1.0276 -0.0063 34 1 1.5100 0.9815 2.3840 35 1 0.2473 3.2040 5.6418 36 1 0.1842 2.2641 7.8923 37 1 0.5033 0.2584 9.3792 38 1 1.0998 -2.0958 9.5961 39 1 1.7304 -3.4219 7.6264 40 1 1.7779 -2.4193 5.4052 41 1 4.0060 0.1473 1.0994 42 1 3.9377 -1.3448 2.0669 43 1 5.0412 -1.7697 -0.1036 44 1 3.4982 -2.6529 -0.0051 45 1 3.9902 0.0019 -1.4316 46 1 3.6518 -1.5719 -2.1970 47 1 2.9922 -0.6656 -4.7795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993733701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:55 Heat of formation + Delta-G solvation = 45.323645 kcal Electronic energy + Delta-G solvation = -29289.645337 eV Core-core repulsion = 25437.842946 eV Total energy + Delta-G solvation = -3851.802391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.29966 -39.47608 -37.66400 -37.54946 -34.38003 -33.20433 -32.53208 -31.68714 -31.37110 -30.09947 -29.02022 -26.35661 -25.24309 -24.82421 -23.75676 -23.13384 -21.93518 -20.66899 -20.51649 -19.45086 -18.26709 -17.62308 -17.25378 -16.42050 -16.04887 -15.74687 -15.26658 -15.07583 -14.71565 -14.66460 -14.07107 -13.97054 -13.78019 -13.65466 -13.43767 -13.30831 -13.09246 -12.76560 -12.52890 -12.35390 -12.06632 -11.74310 -11.62380 -11.49621 -11.08393 -10.89775 -10.73079 -10.56886 -10.40598 -10.29393 -10.15400 -10.05277 -10.02595 -9.77084 -9.51057 -9.37260 -9.30288 -8.72429 -8.44483 -8.29035 -6.65613 -5.77877 -3.22290 -0.14572 0.63980 1.51973 2.55129 3.13260 3.15652 3.39735 3.45397 3.47175 3.91552 4.01491 4.30604 4.47889 4.52972 4.56668 4.64045 4.86325 4.97317 5.06404 5.19797 5.31082 5.40035 5.47102 5.52981 5.57184 5.62403 5.77528 5.80409 5.85365 5.99040 6.09935 6.10853 6.23766 6.26434 6.32986 6.39430 6.45878 6.54467 6.58182 6.67746 6.75320 6.77924 6.86415 7.01630 7.09038 7.41556 7.46124 7.68605 7.78857 7.83210 8.32545 8.46716 9.21799 9.84329 10.40908 11.30863 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.002588 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.034453 B =10818.011559 C =11132.437627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.128 3.872 5 H 0.089 0.911 6 N -0.690 5.690 7 C 0.569 3.431 8 O -0.532 6.532 9 C 0.131 3.869 10 N -0.457 5.457 11 C 0.075 3.925 12 C -0.136 4.136 13 C -0.031 4.031 14 C -0.122 4.122 15 C -0.093 4.093 16 C -0.126 4.126 17 C -0.087 4.087 18 C -0.074 4.074 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.169 3.831 22 N -0.581 5.581 23 C -0.252 4.252 24 H 0.070 0.930 25 C 0.005 3.995 26 N -0.903 5.903 27 Si 0.902 3.098 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.408 0.592 35 H 0.160 0.840 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.175 0.825 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.019 0.981 46 H 0.088 0.912 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 3.192 24.354 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.047 0.953 4 C 0.022 3.978 5 H 0.107 0.893 6 N -0.339 5.339 7 C 0.353 3.647 8 O -0.410 6.410 9 C -0.021 4.021 10 N -0.169 5.169 11 C -0.071 4.071 12 C -0.156 4.156 13 C -0.036 4.036 14 C -0.140 4.140 15 C -0.112 4.112 16 C -0.144 4.144 17 C -0.106 4.106 18 C -0.077 4.077 19 C -0.156 4.156 20 C -0.179 4.179 21 C 0.044 3.956 22 N -0.305 5.305 23 C -0.382 4.382 24 H 0.088 0.912 25 C -0.194 4.194 26 N -0.547 5.547 27 Si 0.732 3.268 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.210 1.210 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.243 0.757 35 H 0.178 0.822 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.192 0.808 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.037 0.963 46 H 0.107 0.893 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.067 2.860 23.372 23.637 hybrid contribution -0.564 -0.191 0.317 0.675 sum -2.631 2.669 23.689 23.984 Atomic orbital electron populations 1.21826 0.95593 1.01701 1.00385 1.20556 0.93312 0.93621 0.86492 0.95309 1.21923 0.95328 0.96931 0.83588 0.89299 1.46041 1.67162 1.13121 1.07580 1.17714 0.77881 0.86429 0.82643 1.90574 1.51813 1.14141 1.84454 1.21541 0.97182 0.90406 0.93008 1.67295 1.09075 1.05927 1.34561 1.22203 0.97155 0.99959 0.87774 1.22126 0.99736 0.94545 0.99231 1.18209 0.97985 0.93797 0.93588 1.20906 1.01849 0.95560 0.95724 1.21079 0.96884 0.94171 0.99111 1.21133 1.00176 1.00594 0.92523 1.22253 0.94729 0.93840 0.99794 1.18726 1.00900 0.95537 0.92498 1.21769 0.95133 1.00226 0.98447 1.22185 0.99248 0.99693 0.96815 1.20846 0.83091 0.97224 0.94471 1.44032 1.03149 1.65077 1.18212 1.19129 0.95026 1.37939 0.86085 0.91222 1.25075 0.97863 0.99548 0.96935 1.70010 1.23733 1.44026 1.16901 0.86377 0.79593 0.80250 0.80578 1.20898 1.21678 1.20984 0.94141 0.91723 0.92675 0.75656 0.82248 0.84097 0.85094 0.85599 0.85388 0.80825 0.92644 0.93105 0.92959 0.92459 0.96267 0.89343 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.84 37.16 0.29 -2.32 16 2 C 0.17 3.42 3.03 -67.60 -0.21 3.22 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.13 2.34 1.99 -67.81 -0.14 2.20 16 5 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 6 N -0.69 -10.88 4.56 -54.60 -0.25 -11.13 16 7 C 0.57 9.12 7.74 -12.28 -0.10 9.03 16 8 O -0.53 -9.51 13.10 5.33 0.07 -9.44 16 9 C 0.13 1.85 6.81 -82.55 -0.56 1.29 16 10 N -0.46 -5.83 9.52 -9.81 -0.09 -5.92 16 11 C 0.08 0.73 11.06 -18.03 -0.20 0.53 16 12 C -0.14 -1.19 9.88 -39.28 -0.39 -1.58 16 13 C -0.03 -0.33 5.75 -106.82 -0.61 -0.94 16 14 C -0.12 -1.03 9.82 -39.53 -0.39 -1.42 16 15 C -0.09 -0.76 9.95 -39.89 -0.40 -1.16 16 16 C -0.13 -1.24 9.95 -39.87 -0.40 -1.63 16 17 C -0.09 -1.10 9.23 -39.60 -0.37 -1.47 16 18 C -0.07 -0.97 5.76 -106.59 -0.61 -1.58 16 19 C -0.12 -2.11 5.46 -26.69 -0.15 -2.26 16 20 C -0.14 -2.74 6.08 -26.61 -0.16 -2.90 16 21 C 0.17 3.99 5.28 -3.71 -0.02 3.97 16 22 N -0.58 -14.17 2.99 -164.77 -0.49 -14.67 16 23 C -0.25 -6.71 8.59 -15.06 -0.13 -6.84 16 24 H 0.07 1.82 6.21 -52.48 -0.33 1.49 16 25 C 0.00 0.12 4.95 -17.43 -0.09 0.04 16 26 N -0.90 -25.79 11.19 55.49 0.62 -25.16 16 27 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 31 H 0.04 0.66 7.78 -51.93 -0.40 0.25 16 32 H 0.06 1.30 7.66 -51.93 -0.40 0.91 16 33 H 0.05 1.09 7.40 -51.93 -0.38 0.70 16 34 H 0.41 5.89 7.97 -40.82 -0.33 5.56 16 35 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.17 2.47 4.96 -52.49 -0.26 2.21 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 2.33 6.11 -51.93 -0.32 2.01 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -30.63 374.58 -10.73 -41.36 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.59 Total: 6.62 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -4.61 Total: -3.83 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.21 Total: -56.88 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.63 -10.73 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993733701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.685 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds