Wall clock time and date at job start Tue Mar 31 2020 22:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.58503 * 2 1 4 4 C 1.53194 * 109.58650 * 239.71767 * 2 1 3 5 5 H 1.09001 * 109.49828 * 305.41955 * 4 2 1 6 6 N 1.46501 * 109.49536 * 65.48073 * 4 2 1 7 7 C 1.34776 * 120.00270 * 204.93441 * 6 4 2 8 8 O 1.21569 * 119.99713 * 0.02562 * 7 6 4 9 9 C 1.47757 * 120.00593 * 180.02562 * 7 6 4 10 10 C 1.40607 * 120.26432 * 0.02562 * 9 7 6 11 11 N 1.30803 * 121.54080 * 179.97438 * 10 9 7 12 12 C 1.33828 * 121.71668 * 0.02562 * 11 10 9 13 13 C 1.40521 * 120.83051 * 180.22100 * 12 11 10 14 14 C 1.36133 * 119.81662 * 180.26643 * 13 12 11 15 15 C 1.39338 * 121.09346 * 359.50627 * 14 13 12 16 16 C 1.36144 * 120.82530 * 0.24847 * 15 14 13 17 17 C 1.40535 * 119.62096 * 0.02562 * 16 15 14 18 18 C 1.39006 * 120.27277 * 179.97438 * 9 7 6 19 19 C 1.53034 * 109.34154 * 185.45009 * 4 2 1 20 20 C 1.53038 * 109.53735 * 61.31589 * 19 4 2 21 21 C 1.53191 * 109.34104 * 298.68500 * 20 19 4 22 22 N 1.46919 * 108.77633 * 54.62038 * 21 20 19 23 23 C 1.36933 * 120.63564 * 126.41007 * 22 21 20 24 24 H 1.08004 * 120.00411 * 208.63204 * 23 22 21 25 25 C 1.38812 * 119.99825 * 28.63327 * 23 22 21 26 26 N 1.31623 * 119.99927 * 14.71556 * 25 23 22 27 27 Si 1.86796 * 120.00337 * 194.71620 * 25 23 22 28 28 H 1.48503 * 109.47198 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47253 * 119.99773 * 27 25 23 30 30 H 1.48493 * 109.47453 * 240.00048 * 27 25 23 31 31 H 1.08999 * 109.46808 * 180.28274 * 1 2 3 32 32 H 1.08999 * 109.46559 * 300.27883 * 1 2 3 33 33 H 1.08995 * 109.46837 * 60.28574 * 1 2 3 34 34 H 0.96999 * 120.00277 * 24.94301 * 6 4 2 35 35 H 1.07995 * 119.23285 * 359.96092 * 10 9 7 36 36 H 1.08004 * 120.09441 * 0.02805 * 13 12 11 37 37 H 1.08003 * 119.45378 * 179.77163 * 14 13 12 38 38 H 1.07999 * 119.59174 * 180.23074 * 15 14 13 39 39 H 1.07998 * 120.18956 * 180.02562 * 16 15 14 40 40 H 1.07997 * 121.01971 * 0.02562 * 18 9 7 41 41 H 1.09002 * 109.46052 * 181.36873 * 19 4 2 42 42 H 1.08997 * 109.46066 * 301.33577 * 19 4 2 43 43 H 1.09004 * 109.50126 * 178.71298 * 20 19 4 44 44 H 1.09003 * 109.49625 * 58.65655 * 20 19 4 45 45 H 1.09001 * 109.58547 * 294.82981 * 21 20 19 46 46 H 1.08999 * 109.70307 * 174.47724 * 21 20 19 47 47 H 0.96998 * 120.00090 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2464 5 1 1.6046 -1.7244 -1.2925 6 7 1.6676 0.0281 -2.4436 7 6 1.5454 -0.6029 -3.6283 8 8 1.7467 -1.7995 -3.7032 9 6 1.1666 0.1594 -4.8360 10 6 0.9329 1.5436 -4.7559 11 7 0.5970 2.2429 -5.8090 12 6 0.4583 1.6775 -7.0141 13 6 0.1012 2.4474 -8.1340 14 6 -0.0395 1.8500 -9.3491 15 6 0.1750 0.4824 -9.5077 16 6 0.5270 -0.2961 -8.4478 17 6 0.6757 0.2861 -7.1774 18 6 1.0395 -0.4857 -6.0607 19 6 3.5678 -0.8440 -1.1734 20 6 3.9604 -1.6608 0.0598 21 6 3.4686 -0.9436 1.3209 22 7 2.0255 -0.6991 1.1936 23 6 1.1587 -1.1145 2.1688 24 1 0.1393 -1.3650 1.9144 25 6 1.5900 -1.2135 3.4845 26 7 2.7190 -0.6451 3.8515 27 14 0.5682 -2.1534 4.7343 28 1 -0.6468 -2.6945 4.0738 29 1 1.3706 -3.2738 5.2876 30 1 0.1688 -1.2399 5.8347 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3632 0.5182 0.8875 33 1 -0.3633 0.5094 -0.8925 34 1 1.5066 0.9828 -2.3839 35 1 1.0329 2.0411 -3.8026 36 1 -0.0651 3.5095 -8.0303 37 1 -0.3178 2.4467 -10.2052 38 1 0.0602 0.0342 -10.4836 39 1 0.6912 -1.3550 -8.5825 40 1 1.2135 -1.5477 -6.1510 41 1 3.9375 -1.3401 -2.0709 42 1 4.0050 0.1519 -1.1029 43 1 5.0450 -1.7626 0.0987 44 1 3.5042 -2.6491 0.0019 45 1 3.9921 0.0063 1.4287 46 1 3.6579 -1.5664 2.1953 47 1 3.0203 -0.7140 4.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993888329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:03 Heat of formation + Delta-G solvation = 38.605902 kcal Electronic energy + Delta-G solvation = -28799.022903 eV Core-core repulsion = 24946.929209 eV Total energy + Delta-G solvation = -3852.093694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.23480 -39.70919 -37.80920 -37.10456 -34.45149 -33.72247 -32.65566 -31.83190 -30.97720 -30.39550 -29.10136 -26.37849 -25.17063 -24.68376 -24.36293 -22.43447 -22.22536 -20.74123 -20.68734 -19.55686 -18.41353 -18.00218 -17.37803 -16.42329 -16.06710 -15.59781 -15.16470 -14.96910 -14.84097 -14.56253 -14.35593 -14.09562 -13.79288 -13.72835 -13.64269 -13.42225 -13.25910 -12.82501 -12.56485 -12.15090 -12.11643 -11.85180 -11.73183 -11.56064 -11.14799 -10.94125 -10.82280 -10.77717 -10.58304 -10.33337 -10.30219 -10.11986 -10.03281 -9.80968 -9.58504 -9.39166 -9.17202 -8.76403 -8.61670 -8.47039 -6.70092 -5.80608 -3.25096 -0.07550 0.29381 1.55104 2.30815 3.15381 3.18655 3.36231 3.44669 3.46415 3.81460 3.86851 4.22058 4.38804 4.45741 4.47166 4.51994 4.69823 4.76429 4.88934 5.05985 5.27075 5.35438 5.41129 5.48198 5.52736 5.53992 5.61758 5.68794 5.76670 5.92532 5.95142 6.02102 6.04701 6.12545 6.18811 6.30771 6.38305 6.41567 6.50524 6.58569 6.67849 6.73603 6.82821 6.95785 7.03766 7.39453 7.51655 7.62633 7.68161 7.80364 8.27106 8.43231 9.18668 9.81171 10.36755 11.27816 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.002263 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.870793 B =12372.297932 C =12623.917351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 H 0.029 0.971 4 C 0.130 3.870 5 H 0.088 0.912 6 N -0.710 5.710 7 C 0.560 3.440 8 O -0.536 6.536 9 C -0.187 4.187 10 C 0.163 3.837 11 N -0.476 5.476 12 C 0.140 3.860 13 C -0.098 4.098 14 C -0.094 4.094 15 C -0.122 4.122 16 C -0.085 4.085 17 C -0.113 4.113 18 C 0.010 3.990 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.168 3.832 22 N -0.582 5.582 23 C -0.250 4.250 24 H 0.072 0.928 25 C 0.002 3.998 26 N -0.903 5.903 27 Si 0.902 3.098 28 H -0.277 1.277 29 H -0.289 1.289 30 H -0.290 1.290 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.395 0.605 35 H 0.163 0.837 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.153 0.847 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.019 0.981 46 H 0.092 0.908 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 4.774 -24.497 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.059 3.941 3 H 0.046 0.954 4 C 0.025 3.975 5 H 0.106 0.894 6 N -0.360 5.360 7 C 0.346 3.654 8 O -0.414 6.414 9 C -0.193 4.193 10 C -0.011 4.011 11 N -0.183 5.183 12 C 0.019 3.981 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.140 4.140 16 C -0.104 4.104 17 C -0.115 4.115 18 C -0.017 4.017 19 C -0.156 4.156 20 C -0.180 4.180 21 C 0.042 3.958 22 N -0.305 5.305 23 C -0.379 4.379 24 H 0.089 0.911 25 C -0.196 4.196 26 N -0.547 5.547 27 Si 0.732 3.268 28 H -0.202 1.202 29 H -0.216 1.216 30 H -0.217 1.217 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.230 0.770 35 H 0.180 0.820 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.037 0.963 46 H 0.110 0.890 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.134 4.839 -24.354 25.028 hybrid contribution -0.291 -0.837 0.690 1.123 sum -3.425 4.003 -23.665 24.244 Atomic orbital electron populations 1.21831 0.95612 1.01790 1.00295 1.20564 0.93259 0.93619 0.86633 0.95388 1.21868 0.95241 0.96911 0.83462 0.89363 1.46079 1.69361 1.12253 1.08317 1.17927 0.77615 0.87002 0.82871 1.90785 1.50706 1.14411 1.85530 1.21094 1.07022 0.95680 0.95460 1.23105 0.90854 0.89755 0.97386 1.67970 1.13295 1.38684 0.98366 1.19030 0.96595 0.90247 0.92262 1.20844 0.99609 1.00400 0.90793 1.20991 0.97919 0.95013 0.97418 1.20954 0.99816 0.93990 0.99235 1.21092 0.97839 1.00314 0.91162 1.18851 1.03246 0.94398 0.94988 1.21984 0.89060 1.00696 0.89958 1.21767 0.95195 1.00182 0.98439 1.22184 0.99261 0.99710 0.96821 1.20883 0.82957 0.97339 0.94606 1.44048 1.03185 1.65079 1.18204 1.19221 0.94717 1.37782 0.86225 0.91078 1.25074 0.97793 0.99779 0.96957 1.70022 1.22884 1.44882 1.16943 0.86222 0.79673 0.79476 0.81404 1.20242 1.21578 1.21747 0.92608 0.91684 0.94271 0.76978 0.81964 0.84466 0.85103 0.85265 0.84834 0.82891 0.93151 0.92672 0.92967 0.92510 0.96304 0.89020 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.84 37.16 0.29 -2.20 16 2 C 0.17 3.26 3.03 -67.59 -0.20 3.06 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.13 2.29 1.99 -67.81 -0.14 2.16 16 5 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 6 N -0.71 -10.01 4.52 -54.66 -0.25 -10.26 16 7 C 0.56 8.28 7.74 -12.37 -0.10 8.18 16 8 O -0.54 -9.78 16.05 5.31 0.09 -9.70 16 9 C -0.19 -2.29 5.89 -104.83 -0.62 -2.91 16 10 C 0.16 1.80 10.68 -17.10 -0.18 1.62 16 11 N -0.48 -5.66 10.30 -10.67 -0.11 -5.77 16 12 C 0.14 1.55 6.61 -84.79 -0.56 0.99 16 13 C -0.10 -0.85 9.97 -39.48 -0.39 -1.24 16 14 C -0.09 -0.62 9.94 -39.93 -0.40 -1.01 16 15 C -0.12 -0.79 9.96 -39.92 -0.40 -1.19 16 16 C -0.09 -0.67 9.77 -39.47 -0.39 -1.06 16 17 C -0.11 -1.18 5.74 -106.82 -0.61 -1.79 16 18 C 0.01 0.11 9.46 -38.43 -0.36 -0.25 16 19 C -0.12 -2.06 5.46 -26.69 -0.15 -2.21 16 20 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 21 C 0.17 3.90 5.29 -3.71 -0.02 3.88 16 22 N -0.58 -13.91 2.99 -164.77 -0.49 -14.40 16 23 C -0.25 -6.55 8.63 -15.06 -0.13 -6.68 16 24 H 0.07 1.83 6.20 -52.48 -0.33 1.51 16 25 C 0.00 0.07 4.97 -17.43 -0.09 -0.02 16 26 N -0.90 -25.53 11.09 55.49 0.62 -24.92 16 27 Si 0.90 21.38 29.58 -169.99 -5.03 16.35 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.05 1.07 7.41 -51.93 -0.39 0.68 16 32 H 0.06 1.25 7.66 -51.93 -0.40 0.86 16 33 H 0.04 0.58 7.78 -51.93 -0.40 0.17 16 34 H 0.40 4.48 6.63 -40.82 -0.27 4.21 16 35 H 0.16 1.39 6.37 -52.49 -0.33 1.05 16 36 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 38 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.15 1.60 7.70 -52.49 -0.40 1.20 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.09 2.40 6.01 -51.93 -0.31 2.09 16 47 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -31.77 377.64 -10.68 -42.44 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.59 Total: 4.11 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -4.60 Total: -3.55 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.24 Total: -55.35 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.77 -10.68 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993888329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.049 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds