Wall clock time and date at job start Tue Mar 31 2020 22:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.58503 * 2 1 4 4 C 1.53194 * 109.58650 * 239.71767 * 2 1 3 5 5 H 1.09001 * 109.49828 * 305.41955 * 4 2 1 6 6 N 1.46501 * 109.49536 * 65.48073 * 4 2 1 7 7 C 1.34776 * 120.00270 * 204.93441 * 6 4 2 8 8 O 1.21569 * 119.99713 * 0.02562 * 7 6 4 9 9 C 1.47757 * 120.00593 * 180.02562 * 7 6 4 10 10 C 1.40607 * 120.26432 * 0.02562 * 9 7 6 11 11 N 1.30803 * 121.54080 * 179.97438 * 10 9 7 12 12 C 1.33828 * 121.71668 * 0.02562 * 11 10 9 13 13 C 1.40521 * 120.83051 * 180.22100 * 12 11 10 14 14 C 1.36133 * 119.81662 * 180.26643 * 13 12 11 15 15 C 1.39338 * 121.09346 * 359.50627 * 14 13 12 16 16 C 1.36144 * 120.82530 * 0.24847 * 15 14 13 17 17 C 1.40535 * 119.62096 * 0.02562 * 16 15 14 18 18 C 1.39006 * 120.27277 * 179.97438 * 9 7 6 19 19 C 1.53034 * 109.34154 * 185.45009 * 4 2 1 20 20 C 1.53038 * 109.53735 * 61.31589 * 19 4 2 21 21 C 1.53191 * 109.34104 * 298.68500 * 20 19 4 22 22 N 1.46919 * 108.77633 * 54.62038 * 21 20 19 23 23 C 1.36933 * 120.63564 * 126.41007 * 22 21 20 24 24 H 1.08004 * 120.00411 * 208.63204 * 23 22 21 25 25 C 1.38812 * 119.99825 * 28.63327 * 23 22 21 26 26 N 1.31623 * 119.99927 * 14.71556 * 25 23 22 27 27 Si 1.86796 * 120.00337 * 194.71620 * 25 23 22 28 28 H 1.48503 * 109.47198 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47253 * 119.99773 * 27 25 23 30 30 H 1.48493 * 109.47453 * 240.00048 * 27 25 23 31 31 H 1.08999 * 109.46808 * 180.28274 * 1 2 3 32 32 H 1.08999 * 109.46559 * 300.27883 * 1 2 3 33 33 H 1.08995 * 109.46837 * 60.28574 * 1 2 3 34 34 H 0.96999 * 120.00277 * 24.94301 * 6 4 2 35 35 H 1.07995 * 119.23285 * 359.96092 * 10 9 7 36 36 H 1.08004 * 120.09441 * 0.02805 * 13 12 11 37 37 H 1.08003 * 119.45378 * 179.77163 * 14 13 12 38 38 H 1.07999 * 119.59174 * 180.23074 * 15 14 13 39 39 H 1.07998 * 120.18956 * 180.02562 * 16 15 14 40 40 H 1.07997 * 121.01971 * 0.02562 * 18 9 7 41 41 H 1.09002 * 109.46052 * 181.36873 * 19 4 2 42 42 H 1.08997 * 109.46066 * 301.33577 * 19 4 2 43 43 H 1.09004 * 109.50126 * 178.71298 * 20 19 4 44 44 H 1.09003 * 109.49625 * 58.65655 * 20 19 4 45 45 H 1.09001 * 109.58547 * 294.82981 * 21 20 19 46 46 H 1.08999 * 109.70307 * 174.47724 * 21 20 19 47 47 H 0.96998 * 120.00090 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2464 5 1 1.6046 -1.7244 -1.2925 6 7 1.6676 0.0281 -2.4436 7 6 1.5454 -0.6029 -3.6283 8 8 1.7467 -1.7995 -3.7032 9 6 1.1666 0.1594 -4.8360 10 6 0.9329 1.5436 -4.7559 11 7 0.5970 2.2429 -5.8090 12 6 0.4583 1.6775 -7.0141 13 6 0.1012 2.4474 -8.1340 14 6 -0.0395 1.8500 -9.3491 15 6 0.1750 0.4824 -9.5077 16 6 0.5270 -0.2961 -8.4478 17 6 0.6757 0.2861 -7.1774 18 6 1.0395 -0.4857 -6.0607 19 6 3.5678 -0.8440 -1.1734 20 6 3.9604 -1.6608 0.0598 21 6 3.4686 -0.9436 1.3209 22 7 2.0255 -0.6991 1.1936 23 6 1.1587 -1.1145 2.1688 24 1 0.1393 -1.3650 1.9144 25 6 1.5900 -1.2135 3.4845 26 7 2.7190 -0.6451 3.8515 27 14 0.5682 -2.1534 4.7343 28 1 -0.6468 -2.6945 4.0738 29 1 1.3706 -3.2738 5.2876 30 1 0.1688 -1.2399 5.8347 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3632 0.5182 0.8875 33 1 -0.3633 0.5094 -0.8925 34 1 1.5066 0.9828 -2.3839 35 1 1.0329 2.0411 -3.8026 36 1 -0.0651 3.5095 -8.0303 37 1 -0.3178 2.4467 -10.2052 38 1 0.0602 0.0342 -10.4836 39 1 0.6912 -1.3550 -8.5825 40 1 1.2135 -1.5477 -6.1510 41 1 3.9375 -1.3401 -2.0709 42 1 4.0050 0.1519 -1.1029 43 1 5.0450 -1.7626 0.0987 44 1 3.5042 -2.6491 0.0019 45 1 3.9921 0.0063 1.4287 46 1 3.6579 -1.5664 2.1953 47 1 3.0203 -0.7140 4.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993888329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:02 Heat of formation + Delta-G solvation = 20.022807 kcal Electronic energy + Delta-G solvation = -28799.828726 eV Core-core repulsion = 24946.929209 eV Total energy + Delta-G solvation = -3852.899517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.05025 -40.89921 -39.26371 -37.89896 -35.98418 -34.52052 -34.28765 -33.46073 -32.03059 -31.07450 -30.60749 -27.93603 -26.91184 -25.75714 -25.11217 -23.72222 -23.11057 -22.34099 -21.88905 -21.13222 -19.35959 -18.88330 -18.31907 -18.12177 -17.20449 -16.85633 -16.56010 -16.22368 -15.64369 -15.60782 -15.53308 -15.39550 -15.20559 -14.93688 -14.84894 -14.51585 -14.38333 -14.28989 -14.10326 -13.35050 -13.24370 -12.83972 -12.78942 -12.73832 -12.70496 -12.51312 -12.42609 -12.36318 -11.99116 -11.82517 -11.78024 -11.65450 -11.60082 -11.33075 -11.10788 -10.54537 -10.52472 -10.12818 -9.82474 -9.30576 -8.65278 -7.84433 -5.30212 -0.82957 -0.43136 0.83288 1.46132 1.49190 1.50830 1.58178 2.00278 2.22061 2.53759 3.05564 3.13990 3.31083 3.51330 3.55318 3.64540 3.72297 3.78742 3.88022 3.97550 4.04610 4.21601 4.22308 4.32460 4.37261 4.42945 4.51978 4.62483 4.70159 4.75131 4.83008 4.89570 4.92626 4.94571 5.04773 5.05209 5.14187 5.20965 5.27842 5.34529 5.40900 5.44629 5.46173 5.48140 5.60685 5.71634 5.79214 5.84149 6.42670 6.47872 6.74253 7.12771 7.18057 7.87682 8.38450 9.22403 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.002263 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.870793 B =12372.297932 C =12623.917351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.164 3.836 3 H 0.037 0.963 4 C 0.148 3.852 5 H 0.061 0.939 6 N -0.700 5.700 7 C 0.566 3.434 8 O -0.575 6.575 9 C -0.203 4.203 10 C 0.161 3.839 11 N -0.493 5.493 12 C 0.119 3.881 13 C -0.118 4.118 14 C -0.078 4.078 15 C -0.115 4.115 16 C -0.094 4.094 17 C -0.128 4.128 18 C 0.010 3.990 19 C -0.110 4.110 20 C -0.129 4.129 21 C 0.174 3.826 22 N -0.600 5.600 23 C -0.249 4.249 24 H 0.073 0.927 25 C -0.051 4.051 26 N -0.934 5.934 27 Si 0.961 3.039 28 H -0.269 1.269 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.411 0.589 35 H 0.183 0.817 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.004 0.996 46 H 0.058 0.942 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 5.502 -27.867 28.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.057 3.943 3 H 0.054 0.946 4 C 0.041 3.959 5 H 0.080 0.920 6 N -0.351 5.351 7 C 0.354 3.646 8 O -0.456 6.456 9 C -0.208 4.208 10 C -0.013 4.013 11 N -0.200 5.200 12 C -0.002 4.002 13 C -0.137 4.137 14 C -0.098 4.098 15 C -0.132 4.132 16 C -0.113 4.113 17 C -0.130 4.130 18 C -0.016 4.016 19 C -0.149 4.149 20 C -0.169 4.169 21 C 0.048 3.952 22 N -0.324 5.324 23 C -0.379 4.379 24 H 0.091 0.909 25 C -0.246 4.246 26 N -0.580 5.580 27 Si 0.790 3.210 28 H -0.193 1.193 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.249 0.751 35 H 0.200 0.800 36 H 0.163 0.837 37 H 0.182 0.818 38 H 0.181 0.819 39 H 0.170 0.830 40 H 0.173 0.827 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.022 0.978 46 H 0.076 0.924 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.144 5.600 -27.764 28.624 hybrid contribution -0.028 -1.024 1.496 1.813 sum -4.172 4.576 -26.267 26.987 Atomic orbital electron populations 1.21751 0.94457 1.01135 1.01374 1.20726 0.94264 0.93624 0.85675 0.94592 1.21364 0.94998 0.95638 0.83890 0.92037 1.45817 1.69206 1.12830 1.07201 1.18227 0.76470 0.86550 0.83374 1.90763 1.52531 1.16190 1.86121 1.20840 1.09372 0.96099 0.94521 1.23325 0.90599 0.89245 0.98140 1.68000 1.14002 1.39070 0.98946 1.19456 0.97020 0.90988 0.92717 1.21075 1.00681 1.00931 0.91005 1.21445 0.95311 0.95459 0.97560 1.21406 0.97748 0.93871 1.00209 1.21399 0.97789 1.01604 0.90490 1.19030 1.03865 0.94272 0.95790 1.22136 0.88358 1.00947 0.90168 1.21694 0.95193 1.00487 0.97492 1.22018 1.00321 0.98767 0.95781 1.20678 0.83066 0.96275 0.95170 1.44281 1.03171 1.65877 1.19079 1.19486 0.95010 1.36645 0.86785 0.90939 1.25750 0.99017 1.01152 0.98706 1.70162 1.24442 1.46569 1.16859 0.85299 0.78525 0.77991 0.79208 1.19296 1.22049 1.21959 0.94050 0.93116 0.90663 0.75100 0.80048 0.83698 0.81782 0.81946 0.82967 0.82696 0.92557 0.91435 0.90946 0.93693 0.97768 0.92386 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 7.84 71.99 0.56 -4.03 16 2 C 0.16 6.33 3.03 44.98 0.14 6.47 16 3 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.15 5.11 1.99 45.07 0.09 5.20 16 5 H 0.06 2.51 7.58 -2.39 -0.02 2.49 16 6 N -0.70 -18.93 4.52 -445.12 -2.01 -20.94 16 7 C 0.57 16.42 7.74 86.76 0.67 17.09 16 8 O -0.58 -21.04 16.05 -3.93 -0.06 -21.11 16 9 C -0.20 -4.83 5.89 -20.00 -0.12 -4.95 16 10 C 0.16 3.39 10.68 85.42 0.91 4.30 16 11 N -0.49 -11.24 10.30 -187.67 -1.93 -13.18 16 12 C 0.12 2.48 6.61 40.27 0.27 2.75 16 13 C -0.12 -1.80 9.97 22.34 0.22 -1.58 16 14 C -0.08 -0.74 9.94 22.04 0.22 -0.52 16 15 C -0.11 -1.03 9.96 22.05 0.22 -0.82 16 16 C -0.09 -1.24 9.77 22.34 0.22 -1.02 16 17 C -0.13 -2.49 5.74 -21.29 -0.12 -2.61 16 18 C 0.01 0.23 9.46 23.01 0.22 0.45 16 19 C -0.11 -3.78 5.46 30.62 0.17 -3.62 16 20 C -0.13 -5.03 6.08 30.67 0.19 -4.84 16 21 C 0.17 8.29 5.29 86.36 0.46 8.75 16 22 N -0.60 -29.15 2.99 -675.22 -2.02 -31.17 16 23 C -0.25 -13.27 8.63 84.03 0.73 -12.54 16 24 H 0.07 3.77 6.20 -2.91 -0.02 3.76 16 25 C -0.05 -2.82 4.97 84.86 0.42 -2.40 16 26 N -0.93 -54.40 11.09 21.65 0.24 -54.16 16 27 Si 0.96 44.84 29.58 68.60 2.03 46.87 16 28 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 29 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 30 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 31 H 0.04 1.57 7.41 -2.39 -0.02 1.55 16 32 H 0.05 1.93 7.66 -2.39 -0.02 1.91 16 33 H 0.07 2.08 7.78 -2.39 -0.02 2.07 16 34 H 0.41 8.55 6.63 -92.71 -0.61 7.93 16 35 H 0.18 2.81 6.37 -2.91 -0.02 2.79 16 36 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.16 0.46 8.06 -2.91 -0.02 0.43 16 38 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 39 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.16 3.20 7.70 -2.91 -0.02 3.18 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.06 3.16 6.01 -2.39 -0.01 3.15 16 47 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -70.98 377.64 2.07 -68.90 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.38 Total: 18.69 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 5.46 Total: 6.09 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -5.73 Total: -119.45 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.11 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.98 2.07 -68.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993888329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.927 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds