Wall clock time and date at job start Tue Mar 31 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58562 * 2 1 4 4 C 1.53194 * 109.58573 * 120.28257 * 2 1 3 5 5 H 1.09004 * 109.49915 * 294.37268 * 4 2 1 6 6 N 1.46500 * 109.50051 * 54.47340 * 4 2 1 7 7 C 1.34776 * 120.00393 * 205.00323 * 6 4 2 8 8 O 1.21552 * 119.99655 * 359.97438 * 7 6 4 9 9 C 1.47880 * 120.00280 * 179.97438 * 7 6 4 10 10 C 1.40569 * 119.70593 * 359.97438 * 9 7 6 11 11 C 1.35809 * 120.73508 * 179.97438 * 10 9 7 12 12 C 1.40545 * 119.98907 * 0.02562 * 11 10 9 13 13 C 1.40817 * 121.14229 * 180.02562 * 12 11 10 14 14 C 1.36555 * 118.19959 * 179.97438 * 13 12 11 15 15 C 1.39421 * 119.93962 * 0.03938 * 14 13 12 16 16 N 1.31022 * 121.71197 * 359.97438 * 15 14 13 17 17 C 1.33742 * 121.34895 * 359.97438 * 16 15 14 18 18 C 1.38413 * 119.70642 * 179.72735 * 9 7 6 19 19 C 1.53074 * 109.29631 * 174.28017 * 4 2 1 20 20 C 1.53040 * 109.66002 * 298.85115 * 19 4 2 21 21 C 1.53191 * 109.31452 * 61.29435 * 20 19 4 22 22 N 1.46920 * 109.58896 * 239.71595 * 2 1 3 23 23 C 1.36939 * 120.63136 * 6.58056 * 22 2 1 24 24 H 1.08007 * 119.99736 * 330.16808 * 23 22 2 25 25 C 1.38808 * 120.00038 * 150.16781 * 23 22 2 26 26 N 1.31613 * 120.00292 * 344.50426 * 25 23 22 27 27 Si 1.86805 * 119.99856 * 164.50802 * 25 23 22 28 28 H 1.48500 * 109.47280 * 60.00028 * 27 25 23 29 29 H 1.48500 * 109.46966 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47311 * 299.99777 * 27 25 23 31 31 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47095 * 300.00054 * 1 2 3 33 33 H 1.08996 * 109.47042 * 60.00358 * 1 2 3 34 34 H 0.97000 * 120.00142 * 24.99497 * 6 4 2 35 35 H 1.08004 * 119.63631 * 359.97438 * 10 9 7 36 36 H 1.08003 * 120.01093 * 179.97438 * 11 10 9 37 37 H 1.07997 * 120.90130 * 359.95723 * 13 12 11 38 38 H 1.08000 * 120.02941 * 180.02562 * 14 13 12 39 39 H 1.08000 * 119.13947 * 179.97438 * 15 14 13 40 40 H 1.08000 * 120.23057 * 359.97438 * 18 9 7 41 41 H 1.09000 * 109.45412 * 178.75262 * 19 4 2 42 42 H 1.09005 * 109.34638 * 58.87078 * 19 4 2 43 43 H 1.09001 * 109.49317 * 301.34407 * 20 19 4 44 44 H 1.08994 * 109.52343 * 181.26861 * 20 19 4 45 45 H 1.08998 * 109.58233 * 185.58152 * 21 20 19 46 46 H 1.09002 * 109.58420 * 65.15587 * 21 20 19 47 47 H 0.96998 * 120.00551 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 1 1.7660 -0.1641 2.1371 6 7 1.4514 -2.0663 1.3098 7 6 1.3283 -2.6933 2.4965 8 8 1.7090 -2.1483 3.5141 9 6 0.7301 -4.0442 2.5605 10 6 0.2915 -4.6685 1.3799 11 6 -0.2605 -5.9089 1.4145 12 6 -0.3987 -6.5824 2.6403 13 6 -0.9669 -7.8692 2.7042 14 6 -1.0716 -8.4684 3.9268 15 6 -0.6222 -7.8049 5.0677 16 7 -0.0941 -6.6074 5.0049 17 6 0.0383 -5.9656 3.8390 18 6 0.6119 -4.6848 3.7818 19 6 3.5675 -0.8495 1.1692 20 6 3.9569 -1.6656 -0.0655 21 6 3.4650 -0.9453 -1.3248 22 7 2.0226 -0.6980 -1.1953 23 6 1.1537 -1.1108 -2.1699 24 1 0.1398 -1.3786 -1.9113 25 6 1.5760 -1.1851 -3.4901 26 7 2.6864 -0.5836 -3.8607 27 14 0.5681 -2.1387 -4.7409 28 1 -0.7925 -1.5509 -4.8320 29 1 1.2287 -2.0647 -6.0688 30 1 0.4667 -3.5581 -4.3163 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.1478 -2.5014 0.4977 35 1 0.3944 -4.1560 0.4348 36 1 -0.5940 -6.3774 0.5003 37 1 -1.3109 -8.3686 1.8106 38 1 -1.5024 -9.4553 4.0099 39 1 -0.7116 -8.2906 6.0281 40 1 0.9549 -4.2016 4.6847 41 1 3.9378 -1.3473 2.0653 42 1 4.0061 0.1460 1.0996 43 1 3.4983 -2.6528 -0.0085 44 1 5.0411 -1.7699 -0.1060 45 1 3.6518 -1.5690 -2.1990 46 1 3.9903 0.0039 -1.4316 47 1 2.9814 -0.6352 -4.7833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994052169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:43 Heat of formation + Delta-G solvation = 39.733157 kcal Electronic energy + Delta-G solvation = -29625.482458 eV Core-core repulsion = 25773.437646 eV Total energy + Delta-G solvation = -3852.044812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.06144 -39.78255 -37.84867 -36.68365 -34.04671 -33.66571 -32.51685 -31.84820 -30.82547 -30.16351 -29.29335 -26.40901 -25.15412 -24.81157 -24.04736 -22.48650 -21.96343 -21.04882 -20.63791 -18.85665 -18.48654 -17.59679 -17.02600 -16.43664 -16.19801 -15.40631 -14.97447 -14.94817 -14.64715 -14.44209 -14.29767 -13.94918 -13.92500 -13.65371 -13.45501 -13.29574 -13.11118 -13.02317 -12.60215 -12.02453 -11.89223 -11.81341 -11.69607 -11.30426 -11.25577 -11.01250 -10.77273 -10.75462 -10.65969 -10.56914 -10.16265 -10.05606 -9.77766 -9.71851 -9.64141 -9.34429 -9.01567 -8.60641 -8.52307 -8.41851 -6.72100 -5.86554 -3.32474 0.08760 0.46540 1.71067 2.40737 3.30195 3.36098 3.37490 3.37986 3.43444 3.98421 4.10404 4.34762 4.39809 4.47700 4.62168 4.74901 4.83455 4.98575 5.06126 5.25196 5.27870 5.28425 5.54005 5.55362 5.56760 5.68188 5.72176 5.72674 5.85880 5.93492 6.07660 6.12894 6.18829 6.19791 6.27439 6.31746 6.39321 6.50438 6.56620 6.63870 6.64996 6.75060 6.90981 6.93131 7.05912 7.33866 7.61558 7.66022 7.72105 7.93721 8.36932 8.52310 9.12783 9.75751 10.33561 11.21428 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012877 B = 0.003415 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.817855 B = 8198.340096 C = 9624.641092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.041 0.959 4 C 0.134 3.866 5 H 0.078 0.922 6 N -0.692 5.692 7 C 0.550 3.450 8 O -0.547 6.547 9 C -0.108 4.108 10 C -0.086 4.086 11 C -0.102 4.102 12 C -0.088 4.088 13 C -0.060 4.060 14 C -0.173 4.173 15 C 0.126 3.874 16 N -0.466 5.466 17 C 0.115 3.885 18 C -0.029 4.029 19 C -0.121 4.121 20 C -0.140 4.140 21 C 0.172 3.828 22 N -0.586 5.586 23 C -0.260 4.260 24 H 0.070 0.930 25 C 0.008 3.992 26 N -0.898 5.898 27 Si 0.899 3.101 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.408 0.592 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.019 0.981 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 -12.823 11.690 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.052 3.948 3 H 0.058 0.942 4 C 0.027 3.973 5 H 0.096 0.904 6 N -0.343 5.343 7 C 0.337 3.663 8 O -0.427 6.427 9 C -0.113 4.113 10 C -0.104 4.104 11 C -0.120 4.120 12 C -0.090 4.090 13 C -0.086 4.086 14 C -0.193 4.193 15 C -0.048 4.048 16 N -0.174 5.174 17 C -0.005 4.005 18 C -0.049 4.049 19 C -0.160 4.160 20 C -0.180 4.180 21 C 0.046 3.954 22 N -0.310 5.310 23 C -0.389 4.389 24 H 0.087 0.913 25 C -0.191 4.191 26 N -0.542 5.542 27 Si 0.729 3.271 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.210 1.210 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.246 0.754 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.177 0.823 40 H 0.167 0.833 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.037 0.963 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.271 -11.845 12.890 18.282 hybrid contribution -0.842 -1.178 -1.982 2.454 sum -6.113 -13.022 10.908 18.054 Atomic orbital electron populations 1.21789 0.95624 1.01388 1.00562 1.20725 0.93360 0.94000 0.86759 0.94172 1.21611 0.92975 0.82693 0.99982 0.90351 1.45949 1.60954 1.18664 1.08745 1.18162 0.79062 0.84979 0.84135 1.90741 1.50544 1.66904 1.34464 1.20071 1.01810 0.95588 0.93815 1.21153 0.96102 0.95153 0.98027 1.20900 0.99565 0.94949 0.96620 1.18966 0.99885 0.95480 0.94671 1.21529 0.95179 0.93181 0.98701 1.21939 1.01959 1.01776 0.93582 1.22985 0.92643 0.90377 0.98783 1.68023 1.13394 1.09145 1.26856 1.18764 0.98546 0.94841 0.88354 1.21214 0.94034 0.91464 0.98174 1.21779 0.95354 1.00550 0.98301 1.22141 0.99006 0.99526 0.97291 1.20793 0.83167 0.97161 0.94269 1.44152 1.03101 1.64984 1.18725 1.19092 0.95199 1.38464 0.86155 0.91279 1.25105 0.97752 0.99273 0.96992 1.70006 1.23985 1.43317 1.16868 0.86436 0.79688 0.80116 0.80864 1.20888 1.21698 1.21018 0.92902 0.94129 0.91696 0.75392 0.84414 0.84547 0.84189 0.84457 0.82320 0.83292 0.93034 0.91819 0.92912 0.93393 0.89658 0.96335 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.73 37.16 0.29 -2.11 16 2 C 0.16 3.05 3.19 -67.60 -0.22 2.84 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.13 2.34 2.34 -67.79 -0.16 2.18 16 5 H 0.08 1.39 7.58 -51.93 -0.39 0.99 16 6 N -0.69 -11.47 3.42 -54.60 -0.19 -11.65 16 7 C 0.55 9.26 7.73 -12.31 -0.10 9.16 16 8 O -0.55 -10.66 15.96 5.32 0.08 -10.57 16 9 C -0.11 -1.57 5.87 -105.01 -0.62 -2.19 16 10 C -0.09 -1.09 9.44 -39.57 -0.37 -1.46 16 11 C -0.10 -1.12 9.74 -39.58 -0.39 -1.50 16 12 C -0.09 -1.01 5.75 -106.73 -0.61 -1.62 16 13 C -0.06 -0.52 9.89 -39.21 -0.39 -0.90 16 14 C -0.17 -1.30 10.03 -39.75 -0.40 -1.70 16 15 C 0.13 1.14 11.15 -17.46 -0.19 0.95 16 16 N -0.47 -5.93 10.34 -10.98 -0.11 -6.04 16 17 C 0.12 1.55 6.60 -84.87 -0.56 0.99 16 18 C -0.03 -0.42 9.56 -38.68 -0.37 -0.79 16 19 C -0.12 -2.13 5.57 -26.67 -0.15 -2.27 16 20 C -0.14 -2.61 5.93 -26.61 -0.16 -2.77 16 21 C 0.17 3.82 5.28 -3.71 -0.02 3.80 16 22 N -0.59 -13.05 2.65 -164.78 -0.44 -13.49 16 23 C -0.26 -6.30 8.57 -15.06 -0.13 -6.43 16 24 H 0.07 1.61 6.24 -52.48 -0.33 1.28 16 25 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16 26 N -0.90 -24.56 11.23 55.49 0.62 -23.94 16 27 Si 0.90 20.18 29.58 -169.99 -5.03 15.16 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 30 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 31 H 0.05 0.91 6.39 -51.93 -0.33 0.58 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.23 7.64 -51.93 -0.40 0.84 16 34 H 0.41 6.74 5.76 -40.82 -0.24 6.51 16 35 H 0.14 1.68 6.34 -52.48 -0.33 1.35 16 36 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.15 2.22 7.60 -52.49 -0.40 1.83 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.99 7.54 -51.93 -0.39 0.60 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 2.13 6.15 -51.93 -0.32 1.81 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -29.93 374.43 -10.53 -40.45 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.49 Total: 8.15 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -4.62 Total: -3.71 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.11 Total: -55.12 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.93 -10.53 -40.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994052169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.186 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds