Wall clock time and date at job start Tue Mar 31 2020 22:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58562 * 2 1 4 4 C 1.53194 * 109.58573 * 120.28257 * 2 1 3 5 5 H 1.09004 * 109.49915 * 294.37268 * 4 2 1 6 6 N 1.46500 * 109.50051 * 54.47340 * 4 2 1 7 7 C 1.34776 * 120.00393 * 205.00323 * 6 4 2 8 8 O 1.21552 * 119.99655 * 359.97438 * 7 6 4 9 9 C 1.47880 * 120.00280 * 179.97438 * 7 6 4 10 10 C 1.40569 * 119.70593 * 359.97438 * 9 7 6 11 11 C 1.35809 * 120.73508 * 179.97438 * 10 9 7 12 12 C 1.40545 * 119.98907 * 0.02562 * 11 10 9 13 13 C 1.40817 * 121.14229 * 180.02562 * 12 11 10 14 14 C 1.36555 * 118.19959 * 179.97438 * 13 12 11 15 15 C 1.39421 * 119.93962 * 0.03938 * 14 13 12 16 16 N 1.31022 * 121.71197 * 359.97438 * 15 14 13 17 17 C 1.33742 * 121.34895 * 359.97438 * 16 15 14 18 18 C 1.38413 * 119.70642 * 179.72735 * 9 7 6 19 19 C 1.53074 * 109.29631 * 174.28017 * 4 2 1 20 20 C 1.53040 * 109.66002 * 298.85115 * 19 4 2 21 21 C 1.53191 * 109.31452 * 61.29435 * 20 19 4 22 22 N 1.46920 * 109.58896 * 239.71595 * 2 1 3 23 23 C 1.36939 * 120.63136 * 6.58056 * 22 2 1 24 24 H 1.08007 * 119.99736 * 330.16808 * 23 22 2 25 25 C 1.38808 * 120.00038 * 150.16781 * 23 22 2 26 26 N 1.31613 * 120.00292 * 344.50426 * 25 23 22 27 27 Si 1.86805 * 119.99856 * 164.50802 * 25 23 22 28 28 H 1.48500 * 109.47280 * 60.00028 * 27 25 23 29 29 H 1.48500 * 109.46966 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47311 * 299.99777 * 27 25 23 31 31 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47095 * 300.00054 * 1 2 3 33 33 H 1.08996 * 109.47042 * 60.00358 * 1 2 3 34 34 H 0.97000 * 120.00142 * 24.99497 * 6 4 2 35 35 H 1.08004 * 119.63631 * 359.97438 * 10 9 7 36 36 H 1.08003 * 120.01093 * 179.97438 * 11 10 9 37 37 H 1.07997 * 120.90130 * 359.95723 * 13 12 11 38 38 H 1.08000 * 120.02941 * 180.02562 * 14 13 12 39 39 H 1.08000 * 119.13947 * 179.97438 * 15 14 13 40 40 H 1.08000 * 120.23057 * 359.97438 * 18 9 7 41 41 H 1.09000 * 109.45412 * 178.75262 * 19 4 2 42 42 H 1.09005 * 109.34638 * 58.87078 * 19 4 2 43 43 H 1.09001 * 109.49317 * 301.34407 * 20 19 4 44 44 H 1.08994 * 109.52343 * 181.26861 * 20 19 4 45 45 H 1.08998 * 109.58233 * 185.58152 * 21 20 19 46 46 H 1.09002 * 109.58420 * 65.15587 * 21 20 19 47 47 H 0.96998 * 120.00551 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 1 1.7660 -0.1641 2.1371 6 7 1.4514 -2.0663 1.3098 7 6 1.3283 -2.6933 2.4965 8 8 1.7090 -2.1483 3.5141 9 6 0.7301 -4.0442 2.5605 10 6 0.2915 -4.6685 1.3799 11 6 -0.2605 -5.9089 1.4145 12 6 -0.3987 -6.5824 2.6403 13 6 -0.9669 -7.8692 2.7042 14 6 -1.0716 -8.4684 3.9268 15 6 -0.6222 -7.8049 5.0677 16 7 -0.0941 -6.6074 5.0049 17 6 0.0383 -5.9656 3.8390 18 6 0.6119 -4.6848 3.7818 19 6 3.5675 -0.8495 1.1692 20 6 3.9569 -1.6656 -0.0655 21 6 3.4650 -0.9453 -1.3248 22 7 2.0226 -0.6980 -1.1953 23 6 1.1537 -1.1108 -2.1699 24 1 0.1398 -1.3786 -1.9113 25 6 1.5760 -1.1851 -3.4901 26 7 2.6864 -0.5836 -3.8607 27 14 0.5681 -2.1387 -4.7409 28 1 -0.7925 -1.5509 -4.8320 29 1 1.2287 -2.0647 -6.0688 30 1 0.4667 -3.5581 -4.3163 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.1478 -2.5014 0.4977 35 1 0.3944 -4.1560 0.4348 36 1 -0.5940 -6.3774 0.5003 37 1 -1.3109 -8.3686 1.8106 38 1 -1.5024 -9.4553 4.0099 39 1 -0.7116 -8.2906 6.0281 40 1 0.9549 -4.2016 4.6847 41 1 3.9378 -1.3473 2.0653 42 1 4.0061 0.1460 1.0996 43 1 3.4983 -2.6528 -0.0085 44 1 5.0411 -1.7699 -0.1060 45 1 3.6518 -1.5690 -2.1990 46 1 3.9903 0.0039 -1.4316 47 1 2.9814 -0.6352 -4.7833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994052169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:42 Heat of formation + Delta-G solvation = 23.544039 kcal Electronic energy + Delta-G solvation = -29626.184471 eV Core-core repulsion = 25773.437646 eV Total energy + Delta-G solvation = -3852.746825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.96589 -41.07307 -39.29372 -37.69685 -35.66394 -34.47197 -34.08366 -33.44887 -31.97558 -31.03951 -30.78156 -27.94953 -26.85721 -25.91001 -24.86868 -23.80667 -23.10975 -22.45765 -22.06468 -20.37795 -19.59387 -18.53794 -18.23847 -17.77708 -17.24864 -16.99573 -16.46258 -16.30037 -15.72056 -15.48664 -15.43900 -15.40703 -15.09463 -14.81620 -14.66554 -14.57805 -14.55784 -14.23152 -13.91442 -13.54867 -12.98260 -12.91497 -12.88924 -12.72611 -12.67047 -12.53562 -12.41395 -12.34610 -12.18014 -11.93268 -11.67761 -11.55831 -11.38260 -11.07808 -11.00549 -10.49724 -10.46673 -10.05391 -9.78844 -9.33740 -8.59125 -7.79478 -5.26755 -0.77498 -0.36698 0.86963 1.46533 1.53602 1.54230 1.60356 2.15865 2.29332 2.56365 3.08988 3.28663 3.37050 3.53569 3.59687 3.66275 3.83817 3.93399 3.99771 4.04180 4.06307 4.07759 4.20255 4.30128 4.38851 4.56611 4.57109 4.66512 4.73714 4.75470 4.87223 4.94315 4.94926 4.98931 5.04424 5.08755 5.12456 5.18432 5.22030 5.32881 5.34488 5.45102 5.49247 5.55308 5.61691 5.76130 5.77299 5.80808 6.46215 6.59378 6.90483 7.18393 7.22127 7.91033 8.45382 9.27279 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012877 B = 0.003415 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.817855 B = 8198.340096 C = 9624.641092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.157 3.843 3 H 0.032 0.968 4 C 0.142 3.858 5 H 0.081 0.919 6 N -0.687 5.687 7 C 0.553 3.447 8 O -0.580 6.580 9 C -0.119 4.119 10 C -0.102 4.102 11 C -0.086 4.086 12 C -0.100 4.100 13 C -0.060 4.060 14 C -0.160 4.160 15 C 0.127 3.873 16 N -0.508 5.508 17 C 0.095 3.905 18 C -0.045 4.045 19 C -0.116 4.116 20 C -0.126 4.126 21 C 0.180 3.820 22 N -0.595 5.595 23 C -0.250 4.250 24 H 0.081 0.919 25 C -0.047 4.047 26 N -0.936 5.936 27 Si 0.959 3.041 28 H -0.278 1.278 29 H -0.305 1.305 30 H -0.271 1.271 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.410 0.590 35 H 0.140 0.860 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.191 0.809 40 H 0.130 0.870 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.056 0.944 46 H -0.005 1.005 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.103 -16.094 12.251 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.051 3.949 3 H 0.050 0.950 4 C 0.035 3.965 5 H 0.099 0.901 6 N -0.338 5.338 7 C 0.341 3.659 8 O -0.461 6.461 9 C -0.124 4.124 10 C -0.120 4.120 11 C -0.104 4.104 12 C -0.102 4.102 13 C -0.086 4.086 14 C -0.180 4.180 15 C -0.046 4.046 16 N -0.217 5.217 17 C -0.025 4.025 18 C -0.065 4.065 19 C -0.155 4.155 20 C -0.165 4.165 21 C 0.055 3.945 22 N -0.319 5.319 23 C -0.380 4.380 24 H 0.099 0.901 25 C -0.243 4.243 26 N -0.582 5.582 27 Si 0.788 3.212 28 H -0.204 1.204 29 H -0.232 1.232 30 H -0.197 1.197 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.248 0.752 35 H 0.158 0.842 36 H 0.187 0.813 37 H 0.193 0.807 38 H 0.198 0.802 39 H 0.207 0.793 40 H 0.147 0.853 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.013 0.987 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.445 -15.125 13.471 21.579 hybrid contribution -0.240 -0.289 -2.004 2.039 sum -7.685 -15.414 11.467 20.692 Atomic orbital electron populations 1.21710 0.94198 1.01777 1.00911 1.20826 0.94542 0.93458 0.86101 0.94996 1.21415 0.92931 0.83198 0.98933 0.90119 1.45858 1.60846 1.18204 1.08855 1.18501 0.78332 0.85677 0.83438 1.90714 1.52057 1.67949 1.35430 1.19866 1.03175 0.94565 0.94804 1.21152 0.97525 0.96207 0.97144 1.21253 0.97522 0.93947 0.97718 1.19241 1.00093 0.96911 0.93956 1.21980 0.94101 0.91819 1.00658 1.22413 1.00121 1.03043 0.92394 1.23708 0.90552 0.89225 1.01075 1.68019 1.15605 1.11100 1.26981 1.18833 0.99308 0.94663 0.89709 1.21131 0.95265 0.92614 0.97458 1.21730 0.95443 1.00657 0.97623 1.21954 0.99755 0.98997 0.95815 1.20565 0.83375 0.95751 0.94848 1.44322 1.02917 1.65475 1.19208 1.19458 0.95665 1.36576 0.86339 0.90102 1.25796 0.98895 1.00724 0.98856 1.70173 1.25961 1.45529 1.16551 0.85476 0.78200 0.79499 0.78061 1.20412 1.23203 1.19704 0.92449 0.91914 0.93179 0.75197 0.84238 0.81341 0.80691 0.80243 0.79250 0.85255 0.92818 0.91287 0.92957 0.92005 0.92568 0.98691 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 7.73 71.98 0.56 -3.86 16 2 C 0.16 6.02 3.19 44.98 0.14 6.16 16 3 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.14 4.93 2.34 45.08 0.11 5.04 16 5 H 0.08 2.82 7.58 -2.39 -0.02 2.81 16 6 N -0.69 -22.65 3.42 -444.94 -1.52 -24.17 16 7 C 0.55 18.89 7.73 86.80 0.67 19.56 16 8 O -0.58 -23.21 15.96 -3.88 -0.06 -23.27 16 9 C -0.12 -3.53 5.87 -20.11 -0.12 -3.65 16 10 C -0.10 -2.48 9.44 22.27 0.21 -2.27 16 11 C -0.09 -1.68 9.74 22.27 0.22 -1.46 16 12 C -0.10 -2.06 5.75 -21.23 -0.12 -2.18 16 13 C -0.06 -0.77 9.89 22.51 0.22 -0.55 16 14 C -0.16 -1.66 10.03 22.16 0.22 -1.43 16 15 C 0.13 1.94 11.15 85.10 0.95 2.88 16 16 N -0.51 -12.48 10.34 -188.65 -1.95 -14.43 16 17 C 0.09 2.50 6.60 40.25 0.27 2.76 16 18 C -0.04 -1.34 9.56 22.85 0.22 -1.13 16 19 C -0.12 -4.04 5.57 30.63 0.17 -3.87 16 20 C -0.13 -4.69 5.93 30.67 0.18 -4.51 16 21 C 0.18 8.21 5.28 86.36 0.46 8.67 16 22 N -0.60 -26.73 2.65 -675.24 -1.79 -28.52 16 23 C -0.25 -12.11 8.57 84.03 0.72 -11.39 16 24 H 0.08 3.68 6.24 -2.91 -0.02 3.66 16 25 C -0.05 -2.43 4.94 84.86 0.42 -2.01 16 26 N -0.94 -52.65 11.23 21.65 0.24 -52.41 16 27 Si 0.96 41.55 29.58 68.60 2.03 43.58 16 28 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 29 H -0.31 -13.83 7.11 99.48 0.71 -13.12 16 30 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 31 H 0.06 1.90 6.39 -2.39 -0.02 1.89 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.86 7.64 -2.39 -0.02 1.84 16 34 H 0.41 13.34 5.76 -92.71 -0.53 12.81 16 35 H 0.14 3.26 6.34 -2.91 -0.02 3.24 16 36 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.13 4.22 7.60 -2.91 -0.02 4.19 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.05 1.95 7.54 -2.39 -0.02 1.93 16 44 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.06 2.90 6.15 -2.39 -0.01 2.89 16 46 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 47 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -67.73 374.43 2.90 -64.83 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.46 Total: 27.62 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 5.49 Total: 6.77 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -5.02 Total: -119.52 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -67.73 2.90 -64.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994052169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.374 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds