Wall clock time and date at job start Tue Mar 31 2020 22:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69775 * 2 1 4 4 C 1.52755 * 109.50843 * 239.88249 * 2 1 3 5 5 H 1.08999 * 109.56752 * 65.67418 * 4 2 1 6 6 N 1.46498 * 109.38813 * 305.63152 * 4 2 1 7 7 C 1.34780 * 120.00088 * 155.14457 * 6 4 2 8 8 O 1.21584 * 119.99690 * 0.02562 * 7 6 4 9 9 C 1.47566 * 120.00067 * 180.02562 * 7 6 4 10 10 C 1.38709 * 120.43394 * 6.06000 * 9 7 6 11 11 C 1.38996 * 120.75123 * 179.97438 * 10 9 7 12 12 C 1.36341 * 121.19355 * 359.97438 * 11 10 9 13 13 C 1.40353 * 119.92940 * 0.02562 * 12 11 10 14 14 C 1.40678 * 122.10638 * 179.97438 * 13 12 11 15 15 C 1.36265 * 118.67083 * 180.02562 * 14 13 12 16 16 N 1.32512 * 121.83460 * 359.97438 * 15 14 13 17 17 C 1.31308 * 122.72249 * 0.02562 * 16 15 14 18 18 C 1.40135 * 119.92247 * 359.74370 * 17 16 15 19 19 C 1.53045 * 109.38344 * 185.70647 * 4 2 1 20 20 C 1.53043 * 109.53561 * 61.23899 * 19 4 2 21 21 C 1.53197 * 109.31071 * 298.63675 * 20 19 4 22 22 N 1.46921 * 109.58399 * 120.35275 * 2 1 3 23 23 C 1.36940 * 120.63392 * 353.42153 * 22 2 1 24 24 H 1.07999 * 119.99763 * 29.85147 * 23 22 2 25 25 C 1.38811 * 120.00260 * 209.85605 * 23 22 2 26 26 N 1.31621 * 119.99458 * 15.15607 * 25 23 22 27 27 Si 1.86788 * 120.00328 * 195.15222 * 25 23 22 28 28 H 1.48495 * 109.47461 * 179.97438 * 27 25 23 29 29 H 1.48497 * 109.47338 * 300.00246 * 27 25 23 30 30 H 1.48507 * 109.46933 * 59.99855 * 27 25 23 31 31 H 1.08998 * 109.47489 * 299.64892 * 1 2 3 32 32 H 1.09000 * 109.46901 * 59.64576 * 1 2 3 33 33 H 1.08995 * 109.47105 * 179.64393 * 1 2 3 34 34 H 0.97002 * 120.00199 * 335.14771 * 6 4 2 35 35 H 1.08001 * 119.62372 * 359.95594 * 10 9 7 36 36 H 1.08001 * 119.40060 * 180.02562 * 11 10 9 37 37 H 1.08002 * 120.03765 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.66428 * 0.04312 * 14 13 12 39 39 H 1.07998 * 119.08111 * 180.02562 * 15 14 13 40 40 H 1.08006 * 120.04135 * 180.02562 * 17 16 15 41 41 H 1.09007 * 109.45905 * 301.22170 * 19 4 2 42 42 H 1.08995 * 109.45417 * 181.25344 * 19 4 2 43 43 H 1.08994 * 109.49510 * 178.68540 * 20 19 4 44 44 H 1.08990 * 109.52481 * 58.60487 * 20 19 4 45 45 H 1.08995 * 109.58604 * 294.84762 * 21 20 19 46 46 H 1.09004 * 109.70006 * 174.49857 * 21 20 19 47 47 H 0.97008 * 119.99699 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2455 5 1 1.7633 -0.1565 -2.1349 6 7 1.4437 -2.0590 -1.3110 7 6 1.3202 -2.6844 -2.4985 8 8 1.7042 -2.1395 -3.5153 9 6 0.7189 -4.0303 -2.5645 10 6 0.1645 -4.6086 -1.4321 11 6 -0.4040 -5.8757 -1.4869 12 6 -0.4348 -6.5862 -2.6502 13 6 0.1149 -6.0387 -3.8198 14 6 0.1084 -6.7313 -5.0442 15 6 0.6621 -6.1336 -6.1364 16 7 1.2017 -4.9249 -6.0734 17 6 1.2421 -4.2225 -4.9647 18 6 0.6949 -4.7457 -3.7854 19 6 3.5639 -0.8462 -1.1726 20 6 3.9523 -1.6687 0.0582 21 6 3.4644 -0.9518 1.3211 22 7 2.0225 -0.6995 1.1945 23 6 1.1536 -1.1135 2.1686 24 1 0.1399 -1.3812 1.9096 25 6 1.5756 -1.1889 3.4888 26 7 2.6894 -0.5929 3.8586 27 14 0.5630 -2.1359 4.7405 28 1 1.2247 -2.0654 6.0680 29 1 -0.7945 -1.5408 4.8313 30 1 0.4539 -3.5552 4.3170 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3633 -1.0276 -0.0064 34 1 1.1377 -2.4938 -0.4997 35 1 0.1751 -4.0681 -0.4971 36 1 -0.8298 -6.3049 -0.5920 37 1 -0.8817 -7.5691 -2.6716 38 1 -0.3269 -7.7170 -5.1172 39 1 0.6604 -6.6592 -7.0799 40 1 1.6924 -3.2408 -4.9627 41 1 4.0058 0.1476 -1.0995 42 1 3.9312 -1.3417 -2.0712 43 1 5.0362 -1.7761 0.0966 44 1 3.4909 -2.6543 -0.0019 45 1 3.9928 -0.0049 1.4310 46 1 3.6506 -1.5776 2.1940 47 1 2.9842 -0.6453 4.7813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994120649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:58 Heat of formation + Delta-G solvation = 44.879363 kcal Electronic energy + Delta-G solvation = -30060.671794 eV Core-core repulsion = 26208.850138 eV Total energy + Delta-G solvation = -3851.821656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.14159 -39.65276 -37.78627 -37.20216 -34.11402 -33.10471 -32.46483 -31.81399 -31.26983 -30.11727 -29.05513 -26.36963 -25.11491 -24.72143 -23.60475 -23.44951 -21.95337 -20.95727 -20.45183 -18.93644 -18.09304 -17.75739 -16.79815 -16.45176 -16.23290 -15.57336 -15.15891 -14.99192 -14.92203 -14.53544 -14.22035 -14.00203 -13.77539 -13.56668 -13.42865 -13.10537 -13.04119 -12.76120 -12.61817 -12.17629 -12.16175 -11.91051 -11.69614 -11.34090 -11.28608 -11.03222 -10.77669 -10.68546 -10.60169 -10.26844 -10.18227 -10.08038 -9.75989 -9.69775 -9.38318 -9.34499 -9.27215 -8.69830 -8.55095 -8.18789 -6.74396 -5.88704 -3.35024 0.00817 0.76491 1.54869 2.68508 3.28757 3.29493 3.34742 3.36728 3.38719 4.03455 4.37486 4.38047 4.46747 4.59136 4.66148 4.79406 4.81888 4.95667 5.17587 5.23469 5.25926 5.44050 5.50435 5.56600 5.58514 5.61247 5.68631 5.81971 5.88492 5.93334 6.05486 6.06771 6.15668 6.18232 6.25703 6.35375 6.47275 6.52048 6.57733 6.61760 6.69347 6.72965 6.87792 6.89907 7.01719 7.31298 7.59673 7.69736 7.83389 7.96232 8.34710 8.43504 9.10530 9.73366 10.31027 11.19312 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.003596 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.849903 B = 7783.809382 C = 8959.122738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.041 0.959 4 C 0.133 3.867 5 H 0.080 0.920 6 N -0.688 5.688 7 C 0.554 3.446 8 O -0.546 6.546 9 C -0.096 4.096 10 C -0.078 4.078 11 C -0.102 4.102 12 C -0.094 4.094 13 C -0.031 4.031 14 C -0.165 4.165 15 C 0.075 3.925 16 N -0.493 5.493 17 C 0.147 3.853 18 C -0.079 4.079 19 C -0.121 4.121 20 C -0.141 4.141 21 C 0.171 3.829 22 N -0.586 5.586 23 C -0.261 4.261 24 H 0.069 0.931 25 C 0.009 3.991 26 N -0.898 5.898 27 Si 0.900 3.100 28 H -0.291 1.291 29 H -0.282 1.282 30 H -0.284 1.284 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.409 0.591 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.150 0.850 40 H 0.201 0.799 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.019 0.981 46 H 0.085 0.915 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 -10.187 -11.989 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 H 0.059 0.941 4 C 0.027 3.973 5 H 0.098 0.902 6 N -0.338 5.338 7 C 0.341 3.659 8 O -0.427 6.427 9 C -0.101 4.101 10 C -0.097 4.097 11 C -0.121 4.121 12 C -0.112 4.112 13 C -0.036 4.036 14 C -0.185 4.185 15 C -0.069 4.069 16 N -0.202 5.202 17 C -0.022 4.022 18 C -0.082 4.082 19 C -0.160 4.160 20 C -0.180 4.180 21 C 0.046 3.954 22 N -0.310 5.310 23 C -0.390 4.390 24 H 0.087 0.913 25 C -0.191 4.191 26 N -0.541 5.541 27 Si 0.729 3.271 28 H -0.217 1.217 29 H -0.209 1.209 30 H -0.210 1.210 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.247 0.753 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.167 0.833 40 H 0.217 0.783 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.103 0.897 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.173 -9.517 -13.314 16.889 hybrid contribution -0.982 -1.206 2.048 2.572 sum -5.155 -10.723 -11.266 16.385 Atomic orbital electron populations 1.21794 0.95606 1.01321 1.00661 1.20644 0.93377 0.94085 0.86761 0.94121 1.21566 0.93038 0.82569 1.00142 0.90165 1.45975 1.60319 1.18885 1.08639 1.18059 0.78937 0.84740 0.84165 1.90520 1.51436 1.66773 1.33939 1.20016 1.01419 0.95144 0.93501 1.21602 0.94858 0.95292 0.97923 1.20954 0.98453 0.94236 0.98501 1.21134 0.98359 0.99961 0.91720 1.18161 0.97427 0.93403 0.94645 1.21844 1.02690 1.01175 0.92801 1.22290 0.94435 0.91710 0.98432 1.67675 1.16091 1.07142 1.29252 1.24656 0.91535 1.00275 0.85774 1.18866 1.00125 0.94249 0.94967 1.21778 0.95229 1.00628 0.98354 1.22145 0.99066 0.99464 0.97339 1.20793 0.83179 0.97210 0.94220 1.44142 1.03170 1.64849 1.18827 1.19077 0.95180 1.38579 0.86176 0.91307 1.25113 0.97712 0.99244 0.97014 1.70011 1.23757 1.43445 1.16901 0.86431 0.79705 0.80066 0.80873 1.21679 1.20868 1.21007 0.91644 0.94089 0.92968 0.75298 0.84401 0.84702 0.84859 0.84605 0.83262 0.78277 0.91710 0.92928 0.93367 0.92940 0.96320 0.89654 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.72 37.16 0.29 -2.04 16 2 C 0.16 2.96 3.18 -67.82 -0.22 2.75 16 3 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.13 2.23 2.31 -68.03 -0.16 2.07 16 5 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16 6 N -0.69 -10.84 3.40 -54.94 -0.19 -11.03 16 7 C 0.55 8.76 7.70 -12.45 -0.10 8.66 16 8 O -0.55 -9.63 13.14 5.29 0.07 -9.56 16 9 C -0.10 -1.35 5.90 -104.66 -0.62 -1.97 16 10 C -0.08 -0.93 9.51 -39.13 -0.37 -1.31 16 11 C -0.10 -1.02 9.93 -39.98 -0.40 -1.42 16 12 C -0.09 -0.91 9.79 -39.47 -0.39 -1.30 16 13 C -0.03 -0.37 5.74 -106.84 -0.61 -0.99 16 14 C -0.17 -1.70 9.88 -39.37 -0.39 -2.09 16 15 C 0.07 0.85 11.07 -17.97 -0.20 0.66 16 16 N -0.49 -7.11 10.30 -13.22 -0.14 -7.25 16 17 C 0.15 2.22 10.49 -17.06 -0.18 2.04 16 18 C -0.08 -1.12 5.76 -106.59 -0.61 -1.74 16 19 C -0.12 -2.05 5.58 -26.69 -0.15 -2.20 16 20 C -0.14 -2.56 5.93 -26.61 -0.16 -2.72 16 21 C 0.17 3.75 5.29 -3.71 -0.02 3.73 16 22 N -0.59 -12.81 2.65 -165.03 -0.44 -13.25 16 23 C -0.26 -6.23 8.57 -15.06 -0.13 -6.36 16 24 H 0.07 1.58 6.24 -52.49 -0.33 1.25 16 25 C 0.01 0.22 4.94 -17.43 -0.09 0.14 16 26 N -0.90 -24.33 11.23 55.49 0.62 -23.71 16 27 Si 0.90 20.00 29.58 -169.99 -5.03 14.97 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 30 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 31 H 0.06 1.22 7.63 -51.93 -0.40 0.82 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.87 6.36 -51.93 -0.33 0.54 16 34 H 0.41 6.49 5.82 -40.82 -0.24 6.25 16 35 H 0.14 1.58 6.42 -52.49 -0.34 1.24 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.20 3.22 4.98 -52.48 -0.26 2.96 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.97 7.53 -51.93 -0.39 0.57 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 2.11 6.15 -51.93 -0.32 1.79 16 47 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -28.55 369.01 -10.38 -38.93 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.36 Total: 9.41 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -4.49 Total: -4.08 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.14 Total: -55.23 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.55 -10.38 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994120649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.811 kcal (2) G-P(sol) polarization free energy of solvation -28.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds