Wall clock time and date at job start Tue Mar 31 2020 22:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69775 * 2 1 4 4 C 1.52755 * 109.50843 * 239.88249 * 2 1 3 5 5 H 1.08999 * 109.56752 * 65.67418 * 4 2 1 6 6 N 1.46498 * 109.38813 * 305.63152 * 4 2 1 7 7 C 1.34780 * 120.00088 * 155.14457 * 6 4 2 8 8 O 1.21584 * 119.99690 * 0.02562 * 7 6 4 9 9 C 1.47566 * 120.00067 * 180.02562 * 7 6 4 10 10 C 1.38709 * 120.43394 * 6.06000 * 9 7 6 11 11 C 1.38996 * 120.75123 * 179.97438 * 10 9 7 12 12 C 1.36341 * 121.19355 * 359.97438 * 11 10 9 13 13 C 1.40353 * 119.92940 * 0.02562 * 12 11 10 14 14 C 1.40678 * 122.10638 * 179.97438 * 13 12 11 15 15 C 1.36265 * 118.67083 * 180.02562 * 14 13 12 16 16 N 1.32512 * 121.83460 * 359.97438 * 15 14 13 17 17 C 1.31308 * 122.72249 * 0.02562 * 16 15 14 18 18 C 1.40135 * 119.92247 * 359.74370 * 17 16 15 19 19 C 1.53045 * 109.38344 * 185.70647 * 4 2 1 20 20 C 1.53043 * 109.53561 * 61.23899 * 19 4 2 21 21 C 1.53197 * 109.31071 * 298.63675 * 20 19 4 22 22 N 1.46921 * 109.58399 * 120.35275 * 2 1 3 23 23 C 1.36940 * 120.63392 * 353.42153 * 22 2 1 24 24 H 1.07999 * 119.99763 * 29.85147 * 23 22 2 25 25 C 1.38811 * 120.00260 * 209.85605 * 23 22 2 26 26 N 1.31621 * 119.99458 * 15.15607 * 25 23 22 27 27 Si 1.86788 * 120.00328 * 195.15222 * 25 23 22 28 28 H 1.48495 * 109.47461 * 179.97438 * 27 25 23 29 29 H 1.48497 * 109.47338 * 300.00246 * 27 25 23 30 30 H 1.48507 * 109.46933 * 59.99855 * 27 25 23 31 31 H 1.08998 * 109.47489 * 299.64892 * 1 2 3 32 32 H 1.09000 * 109.46901 * 59.64576 * 1 2 3 33 33 H 1.08995 * 109.47105 * 179.64393 * 1 2 3 34 34 H 0.97002 * 120.00199 * 335.14771 * 6 4 2 35 35 H 1.08001 * 119.62372 * 359.95594 * 10 9 7 36 36 H 1.08001 * 119.40060 * 180.02562 * 11 10 9 37 37 H 1.08002 * 120.03765 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.66428 * 0.04312 * 14 13 12 39 39 H 1.07998 * 119.08111 * 180.02562 * 15 14 13 40 40 H 1.08006 * 120.04135 * 180.02562 * 17 16 15 41 41 H 1.09007 * 109.45905 * 301.22170 * 19 4 2 42 42 H 1.08995 * 109.45417 * 181.25344 * 19 4 2 43 43 H 1.08994 * 109.49510 * 178.68540 * 20 19 4 44 44 H 1.08990 * 109.52481 * 58.60487 * 20 19 4 45 45 H 1.08995 * 109.58604 * 294.84762 * 21 20 19 46 46 H 1.09004 * 109.70006 * 174.49857 * 21 20 19 47 47 H 0.97008 * 119.99699 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2455 5 1 1.7633 -0.1565 -2.1349 6 7 1.4437 -2.0590 -1.3110 7 6 1.3202 -2.6844 -2.4985 8 8 1.7042 -2.1395 -3.5153 9 6 0.7189 -4.0303 -2.5645 10 6 0.1645 -4.6086 -1.4321 11 6 -0.4040 -5.8757 -1.4869 12 6 -0.4348 -6.5862 -2.6502 13 6 0.1149 -6.0387 -3.8198 14 6 0.1084 -6.7313 -5.0442 15 6 0.6621 -6.1336 -6.1364 16 7 1.2017 -4.9249 -6.0734 17 6 1.2421 -4.2225 -4.9647 18 6 0.6949 -4.7457 -3.7854 19 6 3.5639 -0.8462 -1.1726 20 6 3.9523 -1.6687 0.0582 21 6 3.4644 -0.9518 1.3211 22 7 2.0225 -0.6995 1.1945 23 6 1.1536 -1.1135 2.1686 24 1 0.1399 -1.3812 1.9096 25 6 1.5756 -1.1889 3.4888 26 7 2.6894 -0.5929 3.8586 27 14 0.5630 -2.1359 4.7405 28 1 1.2247 -2.0654 6.0680 29 1 -0.7945 -1.5408 4.8313 30 1 0.4539 -3.5552 4.3170 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3633 -1.0276 -0.0064 34 1 1.1377 -2.4938 -0.4997 35 1 0.1751 -4.0681 -0.4971 36 1 -0.8298 -6.3049 -0.5920 37 1 -0.8817 -7.5691 -2.6716 38 1 -0.3269 -7.7170 -5.1172 39 1 0.6604 -6.6592 -7.0799 40 1 1.6924 -3.2408 -4.9627 41 1 4.0058 0.1476 -1.0995 42 1 3.9312 -1.3417 -2.0712 43 1 5.0362 -1.7761 0.0966 44 1 3.4909 -2.6543 -0.0019 45 1 3.9928 -0.0049 1.4310 46 1 3.6506 -1.5776 2.1940 47 1 2.9842 -0.6453 4.7813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994120649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:56 Heat of formation + Delta-G solvation = 30.075322 kcal Electronic energy + Delta-G solvation = -30061.313745 eV Core-core repulsion = 26208.850138 eV Total energy + Delta-G solvation = -3852.463608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.12053 -40.89944 -39.17600 -38.15845 -35.67566 -34.24046 -33.82729 -33.37843 -32.16231 -31.47596 -30.27084 -27.89074 -26.83934 -25.71844 -24.59909 -24.43275 -23.48191 -22.41690 -21.71538 -20.40311 -19.11114 -18.74509 -18.23545 -17.65518 -17.22618 -17.07910 -16.54326 -16.32694 -15.98483 -15.69146 -15.56001 -15.32170 -15.00232 -14.77146 -14.65564 -14.52842 -14.33873 -14.21228 -13.66396 -13.52624 -13.08311 -13.00294 -12.94342 -12.84955 -12.68127 -12.53911 -12.41283 -12.33949 -12.16993 -11.92740 -11.67471 -11.37819 -11.16567 -11.03553 -10.83289 -10.46655 -10.37021 -10.16781 -9.99952 -9.07560 -8.58796 -7.79582 -5.27032 -0.89865 -0.11649 0.60596 1.53523 1.54234 1.60272 1.74840 2.16289 2.26664 2.56256 3.10076 3.37185 3.50151 3.58234 3.59984 3.72313 3.76540 3.87339 3.96170 4.02455 4.06707 4.19362 4.22567 4.39507 4.41071 4.57263 4.59030 4.66961 4.72431 4.79411 4.81439 4.91627 4.95595 4.99774 5.01649 5.08294 5.15560 5.22331 5.23463 5.34787 5.35101 5.46475 5.55387 5.61851 5.68603 5.76154 5.79908 5.81732 6.46239 6.58874 7.01951 7.20314 7.23014 7.91164 8.45386 9.27223 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.003596 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.849903 B = 7783.809382 C = 8959.122738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.157 3.843 3 H 0.031 0.969 4 C 0.143 3.857 5 H 0.084 0.916 6 N -0.687 5.687 7 C 0.555 3.445 8 O -0.570 6.570 9 C -0.127 4.127 10 C -0.067 4.067 11 C -0.109 4.109 12 C -0.072 4.072 13 C -0.051 4.051 14 C -0.143 4.143 15 C 0.053 3.947 16 N -0.513 5.513 17 C 0.116 3.884 18 C -0.092 4.092 19 C -0.116 4.116 20 C -0.126 4.126 21 C 0.180 3.820 22 N -0.596 5.596 23 C -0.250 4.250 24 H 0.082 0.918 25 C -0.048 4.048 26 N -0.936 5.936 27 Si 0.959 3.041 28 H -0.306 1.306 29 H -0.278 1.278 30 H -0.271 1.271 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.409 0.591 35 H 0.140 0.860 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.051 0.949 45 H -0.006 1.006 46 H 0.055 0.945 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.090 -13.429 -12.827 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.049 0.951 4 C 0.036 3.964 5 H 0.102 0.898 6 N -0.337 5.337 7 C 0.344 3.656 8 O -0.453 6.453 9 C -0.132 4.132 10 C -0.086 4.086 11 C -0.128 4.128 12 C -0.090 4.090 13 C -0.056 4.056 14 C -0.162 4.162 15 C -0.091 4.091 16 N -0.222 5.222 17 C -0.053 4.053 18 C -0.095 4.095 19 C -0.155 4.155 20 C -0.165 4.165 21 C 0.055 3.945 22 N -0.320 5.320 23 C -0.380 4.380 24 H 0.100 0.900 25 C -0.243 4.243 26 N -0.582 5.582 27 Si 0.788 3.212 28 H -0.233 1.233 29 H -0.204 1.204 30 H -0.197 1.197 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.158 0.842 36 H 0.184 0.816 37 H 0.193 0.807 38 H 0.197 0.803 39 H 0.196 0.804 40 H 0.195 0.805 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.012 0.988 46 H 0.073 0.927 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.442 -12.762 -14.181 20.136 hybrid contribution -0.330 -0.262 2.216 2.256 sum -6.771 -13.023 -11.965 18.937 Atomic orbital electron populations 1.21713 0.94157 1.01792 1.00929 1.20749 0.94573 0.93494 0.86148 0.95099 1.21326 0.92842 0.83206 0.98986 0.89807 1.45874 1.60571 1.18414 1.08795 1.18385 0.78343 0.85434 0.83485 1.90521 1.52458 1.67620 1.34652 1.19841 1.04093 0.94635 0.94621 1.21797 0.93581 0.96157 0.97090 1.21313 0.98192 0.93267 1.00047 1.21606 0.96000 1.01097 0.90290 1.18546 0.97830 0.92761 0.96463 1.22309 1.00291 1.02223 0.91351 1.22825 0.94798 0.91020 1.00430 1.67585 1.16632 1.08659 1.29311 1.24303 0.93801 1.00269 0.86966 1.18955 1.00577 0.95539 0.94417 1.21728 0.95492 1.00604 0.97628 1.21952 0.99707 0.98979 0.95902 1.20555 0.83426 0.95726 0.94816 1.44316 1.02949 1.65362 1.19352 1.19457 0.95662 1.36533 0.86331 0.90029 1.25805 0.98858 1.00751 0.98899 1.70181 1.25765 1.45755 1.16535 0.85476 0.78220 0.79472 0.78067 1.23291 1.20371 1.19708 0.93279 0.91852 0.92371 0.75286 0.84203 0.81557 0.80712 0.80294 0.80372 0.80541 0.91341 0.92591 0.92139 0.92973 0.98795 0.92668 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 7.72 71.98 0.56 -3.71 16 2 C 0.16 5.84 3.18 44.83 0.14 5.99 16 3 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.14 4.75 2.31 44.93 0.10 4.86 16 5 H 0.08 2.78 7.58 -2.39 -0.02 2.76 16 6 N -0.69 -21.39 3.40 -445.99 -1.51 -22.91 16 7 C 0.55 17.68 7.70 86.70 0.67 18.35 16 8 O -0.57 -20.80 13.14 -3.98 -0.05 -20.85 16 9 C -0.13 -3.50 5.90 -19.89 -0.12 -3.62 16 10 C -0.07 -1.47 9.51 22.56 0.21 -1.26 16 11 C -0.11 -1.74 9.93 22.01 0.22 -1.52 16 12 C -0.07 -1.06 9.79 22.34 0.22 -0.84 16 13 C -0.05 -1.06 5.74 -21.30 -0.12 -1.18 16 14 C -0.14 -2.39 9.88 22.41 0.22 -2.17 16 15 C 0.05 1.09 11.07 84.13 0.93 2.02 16 16 N -0.51 -14.79 10.30 -195.72 -2.02 -16.80 16 17 C 0.12 3.60 10.49 85.23 0.89 4.49 16 18 C -0.09 -2.55 5.76 -21.14 -0.12 -2.68 16 19 C -0.12 -3.91 5.58 30.62 0.17 -3.74 16 20 C -0.13 -4.61 5.93 30.67 0.18 -4.42 16 21 C 0.18 8.12 5.29 86.36 0.46 8.58 16 22 N -0.60 -26.31 2.65 -676.04 -1.79 -28.11 16 23 C -0.25 -11.91 8.57 84.03 0.72 -11.19 16 24 H 0.08 3.63 6.24 -2.91 -0.02 3.62 16 25 C -0.05 -2.43 4.94 84.86 0.42 -2.01 16 26 N -0.94 -52.37 11.23 21.65 0.24 -52.13 16 27 Si 0.96 41.21 29.58 68.60 2.03 43.24 16 28 H -0.31 -13.81 7.11 99.48 0.71 -13.11 16 29 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 30 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 31 H 0.05 1.78 7.63 -2.39 -0.02 1.76 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.85 6.36 -2.39 -0.02 1.83 16 34 H 0.41 12.68 5.82 -92.71 -0.54 12.14 16 35 H 0.14 2.94 6.42 -2.91 -0.02 2.92 16 36 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 38 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.18 6.16 4.98 -2.92 -0.01 6.14 16 41 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 1.91 7.53 -2.39 -0.02 1.89 16 45 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 46 H 0.05 2.83 6.15 -2.38 -0.01 2.81 16 47 H 0.25 13.61 8.31 -92.70 -0.77 12.84 16 Total: -1.00 -65.04 369.01 3.11 -61.92 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.46 Total: 29.70 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.75 Total: 5.95 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -5.08 Total: -119.95 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -65.04 3.11 -61.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994120649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.997 kcal (2) G-P(sol) polarization free energy of solvation -65.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds