Wall clock time and date at job start Tue Mar 31 2020 22:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.58177 * 2 1 4 4 C 1.53198 * 109.69916 * 239.64580 * 2 1 3 5 5 H 1.08997 * 109.49826 * 305.45543 * 4 2 1 6 6 N 1.46497 * 109.49931 * 65.52382 * 4 2 1 7 7 C 1.34775 * 119.99833 * 204.99948 * 6 4 2 8 8 O 1.21583 * 120.00244 * 359.97438 * 7 6 4 9 9 C 1.47568 * 119.99988 * 180.02562 * 7 6 4 10 10 C 1.38708 * 120.43249 * 354.17491 * 9 7 6 11 11 C 1.38998 * 120.74967 * 179.72371 * 10 9 7 12 12 C 1.36342 * 121.19240 * 0.55944 * 11 10 9 13 13 C 1.40357 * 119.92750 * 359.73120 * 12 11 10 14 14 C 1.40674 * 122.09878 * 179.97438 * 13 12 11 15 15 C 1.36265 * 118.66629 * 180.02562 * 14 13 12 16 16 N 1.32510 * 121.83957 * 359.97438 * 15 14 13 17 17 C 1.31313 * 122.71848 * 0.02562 * 16 15 14 18 18 C 1.40132 * 119.91877 * 359.97438 * 17 16 15 19 19 C 1.53045 * 109.30707 * 185.50858 * 4 2 1 20 20 C 1.53037 * 109.53900 * 61.36577 * 19 4 2 21 21 C 1.53623 * 109.24163 * 298.50693 * 20 19 4 22 22 N 1.46920 * 109.58788 * 120.28800 * 2 1 3 23 23 C 1.36941 * 120.63232 * 353.51055 * 22 2 1 24 24 H 1.07997 * 119.99532 * 30.25156 * 23 22 2 25 25 C 1.38808 * 120.00284 * 210.25610 * 23 22 2 26 26 N 1.31618 * 120.00106 * 23.63145 * 25 23 22 27 27 Si 1.86803 * 119.99941 * 203.63677 * 25 23 22 28 28 H 1.48502 * 109.46969 * 179.97438 * 27 25 23 29 29 H 1.48498 * 109.46865 * 299.99273 * 27 25 23 30 30 H 1.48499 * 109.46986 * 59.99609 * 27 25 23 31 31 H 1.08995 * 109.46654 * 299.71319 * 1 2 3 32 32 H 1.08997 * 109.47276 * 59.71655 * 1 2 3 33 33 H 1.09006 * 109.46929 * 179.71887 * 1 2 3 34 34 H 0.96997 * 119.99713 * 24.99838 * 6 4 2 35 35 H 1.08001 * 119.62109 * 0.02562 * 10 9 7 36 36 H 1.08005 * 119.40012 * 180.26962 * 11 10 9 37 37 H 1.07995 * 120.03655 * 179.74273 * 12 11 10 38 38 H 1.08002 * 120.66967 * 0.03519 * 14 13 12 39 39 H 1.07998 * 119.08205 * 179.97438 * 15 14 13 40 40 H 1.08000 * 120.04052 * 180.02562 * 17 16 15 41 41 H 1.08999 * 109.45468 * 181.38283 * 19 4 2 42 42 H 1.09001 * 109.46062 * 301.35567 * 19 4 2 43 43 H 1.08997 * 109.50112 * 58.58088 * 20 19 4 44 44 H 1.09000 * 109.49606 * 178.65240 * 20 19 4 45 45 H 1.09001 * 109.74022 * 295.11978 * 21 20 19 46 46 H 1.09003 * 109.66501 * 174.54747 * 21 20 19 47 47 H 0.96999 * 120.00135 * 5.80331 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2446 5 1 1.6080 -1.7257 -1.2906 6 7 1.6726 0.0256 -2.4434 7 6 1.5519 -0.6071 -3.6273 8 8 1.7537 -1.8038 -3.7005 9 6 1.1759 0.1530 -4.8351 10 6 0.8277 1.4924 -4.7422 11 6 0.4779 2.2161 -5.8763 12 6 0.4554 1.6315 -7.1078 13 6 0.7950 0.2767 -7.2462 14 6 0.7867 -0.3723 -8.4943 15 6 1.1282 -1.6904 -8.5479 16 7 1.4657 -2.3698 -7.4615 17 6 1.4948 -1.8277 -6.2658 18 6 1.1605 -0.4767 -6.1026 19 6 3.5706 -0.8444 -1.1674 20 6 3.9602 -1.6608 0.0669 21 6 3.4661 -0.9375 1.3290 22 7 2.0226 -0.6981 1.1952 23 6 1.1535 -1.1126 2.1690 24 1 0.1423 -1.3880 1.9085 25 6 1.5723 -1.1787 3.4907 26 7 2.5838 -0.4418 3.8983 27 14 0.7003 -2.3138 4.6911 28 1 1.3347 -2.2009 6.0290 29 1 -0.7304 -1.9277 4.7870 30 1 0.8038 -3.7153 4.2113 31 1 -0.3632 0.5094 0.8925 32 1 -0.3633 0.5182 -0.8874 33 1 -0.3633 -1.0277 -0.0050 34 1 1.5120 0.9804 -2.3851 35 1 0.8330 1.9798 -3.7784 36 1 0.2147 3.2591 -5.7794 37 1 0.1768 2.2104 -7.9759 38 1 0.5153 0.1634 -9.3920 39 1 1.1237 -2.1954 -9.5025 40 1 1.7769 -2.4222 -5.4094 41 1 3.9429 -1.3408 -2.0635 42 1 4.0071 0.1519 -1.0963 43 1 3.5036 -2.6488 0.0086 44 1 5.0446 -1.7629 0.1081 45 1 3.9861 0.0145 1.4351 46 1 3.6538 -1.5586 2.2049 47 1 2.9825 0.2085 3.2991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994120654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:01 Heat of formation + Delta-G solvation = 41.692127 kcal Electronic energy + Delta-G solvation = -29337.968708 eV Core-core repulsion = 25486.008843 eV Total energy + Delta-G solvation = -3851.959865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.30751 -39.72329 -37.93978 -37.38618 -34.69128 -33.27792 -32.68593 -31.86480 -31.44711 -30.17101 -28.86686 -26.38305 -25.14685 -24.72646 -23.76592 -23.56539 -21.87259 -20.98026 -20.60127 -19.49902 -18.20963 -17.96928 -17.07105 -16.88142 -16.42484 -15.86117 -15.25320 -15.11146 -14.88040 -14.63860 -14.26309 -14.02079 -13.95555 -13.67353 -13.53441 -13.40442 -13.25952 -12.94870 -12.59181 -12.37702 -12.34279 -11.92949 -11.87331 -11.39229 -11.31730 -11.14406 -10.76541 -10.47992 -10.40541 -10.35816 -10.19609 -10.05126 -10.00920 -9.81741 -9.50554 -9.45298 -9.22421 -8.89932 -8.41901 -8.35089 -6.93343 -6.08007 -3.29663 -0.16912 0.59218 1.38920 2.49682 3.07385 3.13085 3.48100 3.52499 3.69499 3.87278 4.20691 4.27217 4.38177 4.47843 4.55574 4.60132 4.63769 4.77473 4.99023 5.13134 5.18825 5.31162 5.38556 5.41459 5.43143 5.51342 5.60844 5.63184 5.74193 5.80678 5.84122 5.92577 5.99989 6.05892 6.19000 6.27233 6.33018 6.34777 6.41834 6.49987 6.54688 6.60481 6.64243 6.84596 6.92754 7.07634 7.17107 7.51461 7.83575 8.00056 8.19573 8.54876 9.06216 9.80553 10.23480 11.19058 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021693 B = 0.002594 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.429926 B =10792.750683 C =11122.969396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.169 3.831 3 H 0.025 0.975 4 C 0.130 3.870 5 H 0.091 0.909 6 N -0.707 5.707 7 C 0.557 3.443 8 O -0.532 6.532 9 C -0.094 4.094 10 C -0.081 4.081 11 C -0.105 4.105 12 C -0.090 4.090 13 C -0.030 4.030 14 C -0.166 4.166 15 C 0.078 3.922 16 N -0.490 5.490 17 C 0.148 3.852 18 C -0.081 4.081 19 C -0.117 4.117 20 C -0.134 4.134 21 C 0.149 3.851 22 N -0.588 5.588 23 C -0.349 4.349 24 H 0.061 0.939 25 C -0.021 4.021 26 N -0.916 5.916 27 Si 1.063 2.937 28 H -0.286 1.286 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.396 0.604 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.152 0.848 40 H 0.201 0.799 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.080 0.920 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 6.705 -22.294 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.061 3.939 3 H 0.043 0.957 4 C 0.025 3.975 5 H 0.109 0.891 6 N -0.356 5.356 7 C 0.344 3.656 8 O -0.411 6.411 9 C -0.099 4.099 10 C -0.101 4.101 11 C -0.125 4.125 12 C -0.108 4.108 13 C -0.035 4.035 14 C -0.185 4.185 15 C -0.065 4.065 16 N -0.199 5.199 17 C -0.022 4.022 18 C -0.083 4.083 19 C -0.156 4.156 20 C -0.174 4.174 21 C 0.023 3.977 22 N -0.313 5.313 23 C -0.478 4.478 24 H 0.079 0.921 25 C -0.223 4.223 26 N -0.555 5.555 27 Si 0.893 3.107 28 H -0.211 1.211 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.231 0.769 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.169 0.831 40 H 0.217 0.783 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.098 0.902 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.620 4.381 -20.950 21.563 hybrid contribution -0.378 2.187 -1.660 2.772 sum -2.999 6.568 -22.611 23.735 Atomic orbital electron populations 1.21795 0.95347 1.01861 1.00160 1.20550 0.93530 0.93218 0.86561 0.95750 1.21867 0.95203 0.97097 0.83383 0.89108 1.46065 1.69069 1.12283 1.08217 1.18052 0.77518 0.87030 0.83016 1.90571 1.51202 1.14605 1.84695 1.20015 1.02592 0.94340 0.93001 1.21475 0.96253 0.92866 0.99465 1.20916 0.98902 1.00541 0.92109 1.21152 0.98161 0.93243 0.98293 1.18167 0.97996 0.94235 0.93130 1.21861 1.03135 0.96528 0.97016 1.22341 0.95127 0.91679 0.97392 1.67696 1.13560 1.39528 0.99071 1.24678 0.89987 0.91658 0.95880 1.18875 1.01142 0.95997 0.92321 1.21767 0.95236 1.00110 0.98498 1.22131 0.99395 0.99787 0.96110 1.21105 0.84067 0.96790 0.95703 1.44115 1.02579 1.65565 1.19012 1.19934 0.96613 1.43347 0.87916 0.92119 1.25864 1.00030 1.00635 0.95821 1.70782 1.26142 1.20656 1.37945 0.83545 0.75027 0.75938 0.76176 1.21126 1.21982 1.21962 0.91685 0.94423 0.92522 0.76880 0.84842 0.84734 0.84743 0.84463 0.83089 0.78256 0.92731 0.92720 0.92016 0.92732 0.96372 0.90161 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.84 37.16 0.29 -2.13 16 2 C 0.17 3.25 3.02 -67.60 -0.20 3.04 16 3 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.13 2.22 2.00 -67.81 -0.14 2.09 16 5 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 6 N -0.71 -9.62 4.54 -54.72 -0.25 -9.87 16 7 C 0.56 8.03 7.70 -12.46 -0.10 7.93 16 8 O -0.53 -9.26 13.13 5.29 0.07 -9.19 16 9 C -0.09 -1.14 5.90 -104.66 -0.62 -1.76 16 10 C -0.08 -0.73 9.51 -39.13 -0.37 -1.10 16 11 C -0.11 -0.77 9.93 -39.98 -0.40 -1.16 16 12 C -0.09 -0.70 9.79 -39.47 -0.39 -1.09 16 13 C -0.03 -0.31 5.74 -106.84 -0.61 -0.93 16 14 C -0.17 -1.50 9.88 -39.37 -0.39 -1.89 16 15 C 0.08 0.82 11.07 -17.97 -0.20 0.62 16 16 N -0.49 -6.71 10.30 -13.22 -0.14 -6.84 16 17 C 0.15 2.10 10.49 -17.06 -0.18 1.92 16 18 C -0.08 -1.03 5.76 -106.59 -0.61 -1.64 16 19 C -0.12 -2.00 5.46 -26.69 -0.15 -2.14 16 20 C -0.13 -2.53 6.10 -26.39 -0.16 -2.69 16 21 C 0.15 3.35 4.72 -3.49 -0.02 3.33 16 22 N -0.59 -13.84 2.82 -164.51 -0.46 -14.30 16 23 C -0.35 -9.20 8.46 -15.06 -0.13 -9.32 16 24 H 0.06 1.60 6.31 -52.49 -0.33 1.27 16 25 C -0.02 -0.58 4.71 -17.43 -0.08 -0.66 16 26 N -0.92 -26.53 12.48 55.49 0.69 -25.84 16 27 Si 1.06 24.71 29.98 -169.99 -5.10 19.61 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 30 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 31 H 0.06 1.28 7.63 -51.93 -0.40 0.88 16 32 H 0.04 0.55 7.81 -51.93 -0.41 0.14 16 33 H 0.06 1.10 7.43 -51.93 -0.39 0.71 16 34 H 0.40 4.29 6.67 -40.82 -0.27 4.02 16 35 H 0.13 0.90 6.42 -52.49 -0.34 0.56 16 36 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.20 3.11 4.97 -52.49 -0.26 2.85 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.02 0.41 7.84 -51.93 -0.41 0.01 16 46 H 0.08 2.04 6.43 -51.93 -0.33 1.70 16 47 H 0.27 7.81 6.69 -40.82 -0.27 7.54 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -31.83 371.39 -10.43 -42.26 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.40 Total: 6.15 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -4.45 Total: -7.58 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.16 Total: -56.85 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.07 Total: -9.19 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.10 Total: 19.61 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.83 -10.43 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994120654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.952 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds