Wall clock time and date at job start Tue Mar 31 2020 22:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.70120 * 2 1 4 4 C 1.53618 * 109.66487 * 120.58975 * 2 1 3 5 5 H 1.09004 * 109.66237 * 54.54128 * 4 2 1 6 6 N 1.46498 * 109.43568 * 294.41826 * 4 2 1 7 7 C 1.34777 * 120.00194 * 155.29101 * 6 4 2 8 8 O 1.21585 * 119.99868 * 359.97438 * 7 6 4 9 9 C 1.47569 * 119.99877 * 180.02562 * 7 6 4 10 10 C 1.38702 * 120.43617 * 354.62252 * 9 7 6 11 11 C 1.39000 * 120.75552 * 179.97438 * 10 9 7 12 12 C 1.36344 * 121.18837 * 359.97438 * 11 10 9 13 13 C 1.40351 * 119.92842 * 0.02697 * 12 11 10 14 14 C 1.40680 * 122.10369 * 179.97438 * 13 12 11 15 15 C 1.36259 * 118.67282 * 180.02562 * 14 13 12 16 16 N 1.32509 * 121.83625 * 359.97438 * 15 14 13 17 17 C 1.31311 * 122.72208 * 0.02568 * 16 15 14 18 18 C 1.40136 * 119.91797 * 359.73700 * 17 16 15 19 19 C 1.53043 * 109.24470 * 174.54590 * 4 2 1 20 20 C 1.53034 * 109.53969 * 298.51648 * 19 4 2 21 21 C 1.53197 * 109.31454 * 61.35994 * 20 19 4 22 22 N 1.46924 * 109.58664 * 239.64572 * 2 1 3 23 23 C 1.36939 * 120.63052 * 6.62359 * 22 2 1 24 24 H 1.07999 * 119.99774 * 325.90180 * 23 22 2 25 25 C 1.38805 * 119.99954 * 145.90131 * 23 22 2 26 26 N 1.31624 * 120.00361 * 336.90228 * 25 23 22 27 27 Si 1.86802 * 120.00122 * 156.90164 * 25 23 22 28 28 H 1.48494 * 109.47150 * 89.99708 * 27 25 23 29 29 H 1.48499 * 109.46760 * 329.99741 * 27 25 23 30 30 H 1.48500 * 109.47109 * 210.00046 * 27 25 23 31 31 H 1.08993 * 109.47113 * 180.35783 * 1 2 3 32 32 H 1.09000 * 109.47111 * 300.35772 * 1 2 3 33 33 H 1.08995 * 109.46951 * 60.35517 * 1 2 3 34 34 H 0.97002 * 119.99586 * 335.28344 * 6 4 2 35 35 H 1.08001 * 119.62440 * 359.95257 * 10 9 7 36 36 H 1.07994 * 119.40738 * 180.02562 * 11 10 9 37 37 H 1.07995 * 120.03579 * 180.02562 * 12 11 10 38 38 H 1.08009 * 120.66650 * 0.03958 * 14 13 12 39 39 H 1.07998 * 119.08808 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.04555 * 180.02562 * 17 16 15 41 41 H 1.08993 * 109.46324 * 178.49006 * 19 4 2 42 42 H 1.09008 * 109.45697 * 58.53779 * 19 4 2 43 43 H 1.08997 * 109.49626 * 301.40736 * 20 19 4 44 44 H 1.09007 * 109.52826 * 181.32500 * 20 19 4 45 45 H 1.08997 * 109.58613 * 185.58063 * 21 20 19 46 46 H 1.09005 * 109.58534 * 65.15679 * 21 20 19 47 47 H 0.97006 * 119.99399 * 354.21306 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2453 5 1 1.6096 -1.7336 1.2896 6 7 1.6732 0.0153 2.4460 7 6 1.5568 -0.6194 3.6292 8 8 1.7614 -1.8158 3.7000 9 6 1.1797 0.1375 4.8386 10 6 1.0516 1.5178 4.7921 11 6 0.6962 2.2373 5.9271 12 6 0.4632 1.6113 7.1157 13 6 0.5817 0.2158 7.2072 14 6 0.3524 -0.4767 8.4101 15 6 0.4878 -1.8325 8.4199 16 7 0.8270 -2.5090 7.3322 17 6 1.0557 -1.9277 6.1772 18 6 0.9382 -0.5362 6.0597 19 6 3.5712 -0.8498 1.1676 20 6 3.9615 -1.6627 -0.0688 21 6 3.4656 -0.9420 -1.3264 22 7 2.0225 -0.6995 -1.1945 23 6 1.1537 -1.1127 -2.1690 24 1 0.1614 -1.4451 -1.9021 25 6 1.5484 -1.1042 -3.4997 26 7 2.5242 -0.3126 -3.8918 27 14 0.6947 -2.2162 -4.7343 28 1 -0.4607 -1.4988 -5.3305 29 1 0.2151 -3.4422 -4.0472 30 1 1.6511 -2.5917 -5.8064 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3633 0.5194 0.8868 33 1 -0.3633 0.5083 -0.8931 34 1 1.5096 0.9698 2.3894 35 1 1.2302 2.0396 3.8635 36 1 0.6022 3.3114 5.8661 37 1 0.1878 2.1887 7.9858 38 1 0.0744 0.0556 9.3078 39 1 0.3138 -2.3709 9.3398 40 1 1.3293 -2.5216 5.3177 41 1 3.9443 -1.3479 2.0624 42 1 4.0066 0.1472 1.0991 43 1 3.5062 -2.6514 -0.0127 44 1 5.0461 -1.7635 -0.1111 45 1 3.6532 -1.5637 -2.2018 46 1 3.9878 0.0090 -1.4324 47 1 2.9108 0.3246 -3.2710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994120662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:09 Heat of formation + Delta-G solvation = 39.585644 kcal Electronic energy + Delta-G solvation = -29333.341379 eV Core-core repulsion = 25481.290170 eV Total energy + Delta-G solvation = -3852.051209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.30368 -39.71295 -37.92397 -37.38219 -34.66915 -33.27465 -32.70616 -31.82515 -31.44310 -30.17683 -28.88429 -26.38181 -25.12077 -24.70927 -23.76592 -23.56617 -21.88609 -20.96359 -20.59063 -19.50986 -18.20788 -17.96629 -17.05077 -16.86780 -16.42091 -15.86480 -15.20753 -15.14957 -14.87440 -14.61172 -14.25901 -14.04987 -13.95808 -13.65486 -13.51264 -13.41470 -13.26994 -12.94459 -12.59314 -12.37449 -12.34352 -11.93608 -11.87574 -11.38973 -11.31205 -11.14514 -10.76138 -10.48687 -10.40445 -10.35242 -10.19098 -10.07162 -10.00750 -9.81318 -9.49900 -9.45018 -9.23135 -8.88942 -8.40698 -8.34949 -6.90188 -6.07542 -3.33930 -0.16622 0.59472 1.39265 2.49941 3.07784 3.13591 3.47873 3.52791 3.67663 3.87603 4.20964 4.27488 4.38388 4.48113 4.55269 4.60063 4.64013 4.77723 4.99292 5.13926 5.19028 5.31593 5.39347 5.41743 5.43370 5.50328 5.60355 5.63361 5.74481 5.81265 5.84312 5.92866 6.00254 6.06724 6.20007 6.28824 6.33122 6.35324 6.42042 6.50657 6.54563 6.60937 6.64698 6.85605 6.95071 7.06042 7.16184 7.51891 7.83977 8.04200 8.19987 8.56098 9.06772 9.80037 10.24945 11.18100 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.002592 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.201054 B =10798.641902 C =11039.380761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.168 3.832 3 H 0.026 0.974 4 C 0.130 3.870 5 H 0.091 0.909 6 N -0.707 5.707 7 C 0.557 3.443 8 O -0.532 6.532 9 C -0.094 4.094 10 C -0.082 4.082 11 C -0.105 4.105 12 C -0.090 4.090 13 C -0.030 4.030 14 C -0.166 4.166 15 C 0.078 3.922 16 N -0.490 5.490 17 C 0.148 3.852 18 C -0.081 4.081 19 C -0.117 4.117 20 C -0.134 4.134 21 C 0.151 3.849 22 N -0.588 5.588 23 C -0.350 4.350 24 H 0.058 0.942 25 C -0.019 4.019 26 N -0.914 5.914 27 Si 1.065 2.935 28 H -0.294 1.294 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.152 0.848 40 H 0.202 0.798 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.018 0.982 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 6.358 22.259 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.061 3.939 3 H 0.043 0.957 4 C 0.024 3.976 5 H 0.109 0.891 6 N -0.356 5.356 7 C 0.344 3.656 8 O -0.411 6.411 9 C -0.099 4.099 10 C -0.101 4.101 11 C -0.125 4.125 12 C -0.109 4.109 13 C -0.035 4.035 14 C -0.186 4.186 15 C -0.065 4.065 16 N -0.199 5.199 17 C -0.022 4.022 18 C -0.083 4.083 19 C -0.156 4.156 20 C -0.174 4.174 21 C 0.026 3.974 22 N -0.312 5.312 23 C -0.479 4.479 24 H 0.076 0.924 25 C -0.222 4.222 26 N -0.553 5.553 27 Si 0.895 3.105 28 H -0.221 1.221 29 H -0.218 1.218 30 H -0.212 1.212 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.231 0.769 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.169 0.831 40 H 0.218 0.782 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.036 0.964 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.629 4.070 20.862 21.417 hybrid contribution -0.180 2.164 1.698 2.757 sum -2.808 6.234 22.560 23.573 Atomic orbital electron populations 1.21776 0.95323 1.01824 1.00149 1.20663 0.93547 0.93146 0.86549 0.95692 1.21964 0.95153 0.97121 0.83320 0.89120 1.46075 1.69037 1.12352 1.08171 1.18056 0.77509 0.87017 0.83045 1.90570 1.51074 1.14600 1.84854 1.20015 1.02627 0.93832 0.93456 1.21469 0.96592 0.92847 0.99165 1.20913 0.98549 1.00662 0.92342 1.21151 0.98363 0.92815 0.98524 1.18168 0.98105 0.94008 0.93243 1.21862 1.03192 0.95946 0.97551 1.22339 0.95538 0.91675 0.96978 1.67694 1.11547 1.41217 0.99400 1.24683 0.89770 0.91528 0.96213 1.18880 1.01132 0.95668 0.92665 1.21764 0.95277 1.00100 0.98462 1.22060 0.99385 0.99836 0.96138 1.20983 0.84256 0.96701 0.95492 1.44096 1.02546 1.65453 1.19111 1.19882 0.98481 1.42246 0.87303 0.92426 1.25931 0.99950 0.99956 0.96328 1.70755 1.27621 1.19175 1.37715 0.83537 0.75420 0.75825 0.75724 1.22137 1.21754 1.21193 0.92568 0.94462 0.91664 0.76876 0.84858 0.84740 0.84745 0.84465 0.83089 0.78245 0.92738 0.92725 0.92034 0.92725 0.90608 0.96393 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.87 37.16 0.29 -2.14 16 2 C 0.17 3.25 3.05 -67.38 -0.21 3.04 16 3 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 4 C 0.13 2.22 2.02 -67.59 -0.14 2.09 16 5 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 6 N -0.71 -9.64 4.55 -54.50 -0.25 -9.89 16 7 C 0.56 8.04 7.70 -12.45 -0.10 7.95 16 8 O -0.53 -9.26 13.13 5.29 0.07 -9.19 16 9 C -0.09 -1.14 5.90 -104.66 -0.62 -1.76 16 10 C -0.08 -0.73 9.51 -39.13 -0.37 -1.10 16 11 C -0.11 -0.77 9.93 -39.98 -0.40 -1.17 16 12 C -0.09 -0.70 9.79 -39.47 -0.39 -1.09 16 13 C -0.03 -0.31 5.74 -106.84 -0.61 -0.93 16 14 C -0.17 -1.51 9.88 -39.37 -0.39 -1.90 16 15 C 0.08 0.82 11.07 -17.97 -0.20 0.62 16 16 N -0.49 -6.73 10.30 -13.22 -0.14 -6.86 16 17 C 0.15 2.11 10.49 -17.06 -0.18 1.93 16 18 C -0.08 -1.03 5.76 -106.59 -0.61 -1.65 16 19 C -0.12 -1.99 5.46 -26.69 -0.15 -2.14 16 20 C -0.13 -2.51 6.08 -26.61 -0.16 -2.68 16 21 C 0.15 3.39 4.75 -3.71 -0.02 3.37 16 22 N -0.59 -13.82 2.76 -164.52 -0.45 -14.27 16 23 C -0.35 -9.22 8.33 -15.06 -0.13 -9.35 16 24 H 0.06 1.53 6.45 -52.49 -0.34 1.19 16 25 C -0.02 -0.51 4.70 -17.43 -0.08 -0.59 16 26 N -0.91 -26.46 12.63 55.49 0.70 -25.76 16 27 Si 1.07 24.71 29.98 -169.99 -5.10 19.61 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 29 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 30 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 31 H 0.06 1.10 7.42 -51.93 -0.39 0.71 16 32 H 0.04 0.55 7.82 -51.93 -0.41 0.14 16 33 H 0.06 1.29 7.66 -51.93 -0.40 0.90 16 34 H 0.40 4.31 6.67 -40.82 -0.27 4.04 16 35 H 0.13 0.90 6.42 -52.49 -0.34 0.56 16 36 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 39 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.20 3.13 4.97 -52.49 -0.26 2.87 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.91 6.70 -51.93 -0.35 1.56 16 46 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 47 H 0.27 7.83 6.83 -40.82 -0.28 7.55 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -31.80 372.02 -10.43 -42.23 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.43 Total: 6.02 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -4.45 Total: -7.48 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.14 Total: -56.79 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.07 Total: -9.19 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.10 Total: 19.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.80 -10.43 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994120662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.813 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds