Wall clock time and date at job start Tue Mar 31 2020 22:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 6 6 N 1.46498 * 109.38487 * 305.62932 * 4 2 1 7 7 C 1.34778 * 120.00257 * 155.14378 * 6 4 2 8 8 O 1.21542 * 119.99688 * 0.02562 * 7 6 4 9 9 C 1.47883 * 120.00103 * 180.02562 * 7 6 4 10 10 C 1.40601 * 119.73085 * 359.72457 * 9 7 6 11 11 C 1.35842 * 120.94846 * 179.74540 * 10 9 7 12 12 C 1.40486 * 119.88554 * 0.52629 * 11 10 9 13 13 C 1.40487 * 121.84291 * 179.71477 * 12 11 10 14 14 N 1.31208 * 119.94069 * 180.02562 * 13 12 11 15 15 C 1.32554 * 122.80539 * 0.02562 * 14 13 12 16 16 C 1.36215 * 121.85077 * 0.02562 * 15 14 13 17 17 C 1.40767 * 118.67288 * 359.97438 * 16 15 14 18 18 C 1.38536 * 119.72996 * 180.02562 * 9 7 6 19 19 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 20 20 C 1.53043 * 109.54140 * 61.23858 * 19 4 2 21 21 C 1.53193 * 109.30963 * 298.63474 * 20 19 4 22 22 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 23 23 C 1.36942 * 120.62997 * 353.41990 * 22 2 1 24 24 H 1.08004 * 119.99593 * 29.57692 * 23 22 2 25 25 C 1.38806 * 120.00247 * 209.57473 * 23 22 2 26 26 N 1.31624 * 119.99892 * 15.53828 * 25 23 22 27 27 Si 1.86793 * 120.00245 * 195.53656 * 25 23 22 28 28 H 1.48496 * 109.47444 * 270.00287 * 27 25 23 29 29 H 1.48502 * 109.47008 * 30.00409 * 27 25 23 30 30 H 1.48504 * 109.47247 * 149.99834 * 27 25 23 31 31 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 32 32 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 33 33 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 34 34 H 0.97004 * 119.99820 * 335.14409 * 6 4 2 35 35 H 1.07997 * 119.51982 * 0.02562 * 10 9 7 36 36 H 1.08011 * 120.06137 * 180.23899 * 11 10 9 37 37 H 1.07992 * 120.02464 * 0.02562 * 13 12 11 38 38 H 1.08005 * 119.07265 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.66628 * 180.02562 * 16 15 14 40 40 H 1.08004 * 120.35943 * 359.97438 * 18 9 7 41 41 H 1.09001 * 109.46284 * 301.21051 * 19 4 2 42 42 H 1.09005 * 109.44845 * 181.25310 * 19 4 2 43 43 H 1.08996 * 109.49796 * 178.68040 * 20 19 4 44 44 H 1.09000 * 109.52406 * 58.60257 * 20 19 4 45 45 H 1.08998 * 109.58588 * 294.84653 * 21 20 19 46 46 H 1.08997 * 109.70252 * 174.49039 * 21 20 19 47 47 H 0.97001 * 120.00414 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.7632 -0.1564 -2.1349 6 7 1.4438 -2.0589 -1.3111 7 6 1.3202 -2.6843 -2.4986 8 8 1.7041 -2.1395 -3.5151 9 6 0.7177 -4.0331 -2.5648 10 6 0.2809 -4.6604 -1.3847 11 6 -0.2808 -5.8968 -1.4174 12 6 -0.4209 -6.5698 -2.6426 13 6 -0.9901 -7.8516 -2.7233 14 7 -1.1024 -8.4462 -3.8875 15 6 -0.6972 -7.8895 -5.0202 16 6 -0.1314 -6.6508 -5.0503 17 6 0.0230 -5.9493 -3.8397 18 6 0.5939 -4.6710 -3.7883 19 6 3.5638 -0.8460 -1.1726 20 6 3.9524 -1.6685 0.0581 21 6 3.4644 -0.9518 1.3211 22 7 2.0225 -0.6995 1.1944 23 6 1.1536 -1.1135 2.1685 24 1 0.1386 -1.3770 1.9102 25 6 1.5774 -1.1946 3.4878 26 7 2.6899 -0.5974 3.8596 27 14 0.5689 -2.1511 4.7357 28 1 -0.4222 -1.2453 5.3701 29 1 -0.1419 -3.2610 4.0515 30 1 1.4689 -2.7076 5.7776 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3634 -1.0276 -0.0064 34 1 1.1378 -2.4937 -0.4998 35 1 0.3894 -4.1499 -0.4392 36 1 -0.6148 -6.3637 -0.5025 37 1 -1.3350 -8.3471 -1.8279 38 1 -0.8185 -8.4337 -5.9452 39 1 0.1916 -6.2152 -5.9843 40 1 0.9345 -4.1884 -4.6925 41 1 4.0058 0.1477 -1.0996 42 1 3.9312 -1.3415 -2.0713 43 1 5.0363 -1.7760 0.0965 44 1 3.4910 -2.6543 -0.0021 45 1 3.9928 -0.0049 1.4310 46 1 3.6506 -1.5776 2.1938 47 1 2.9859 -0.6537 4.7816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994165438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:12 Heat of formation + Delta-G solvation = 22.974033 kcal Electronic energy + Delta-G solvation = -29627.133674 eV Core-core repulsion = 25774.362132 eV Total energy + Delta-G solvation = -3852.771543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.96543 -41.07909 -39.32744 -37.90473 -35.66832 -34.18534 -33.94957 -33.46752 -32.40898 -30.92275 -30.62094 -27.96017 -26.86663 -25.97569 -24.78271 -23.83195 -23.21205 -22.44996 -22.02277 -20.36641 -19.45970 -18.65897 -18.24259 -17.60023 -17.29865 -16.99846 -16.42196 -16.28216 -15.91287 -15.70605 -15.44507 -15.29977 -15.03118 -14.72937 -14.63301 -14.60711 -14.56244 -14.25330 -13.80385 -13.55966 -13.40615 -13.06733 -12.92923 -12.85932 -12.71707 -12.40868 -12.33351 -12.18759 -12.08855 -11.91853 -11.67633 -11.38139 -11.25633 -11.08833 -11.01367 -10.51483 -10.47893 -10.24358 -9.90684 -9.11089 -8.59298 -7.79986 -5.26785 -0.82063 -0.33900 0.82115 1.49801 1.51885 1.54651 1.61750 2.19046 2.35654 2.56144 3.06594 3.37023 3.48793 3.53524 3.57255 3.59568 3.76033 3.84064 3.99550 4.01427 4.06135 4.09862 4.20561 4.30727 4.39010 4.56718 4.60276 4.66048 4.67344 4.74412 4.78476 4.93598 4.95029 4.98899 5.03308 5.04716 5.12255 5.21873 5.23265 5.27418 5.34696 5.45759 5.54638 5.58975 5.63578 5.71875 5.76190 5.81043 6.46021 6.60072 6.96339 7.18582 7.22062 7.91047 8.44945 9.26991 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012821 B = 0.003411 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.310880 B = 8206.273430 C = 9642.881759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.157 3.843 3 H 0.031 0.969 4 C 0.142 3.858 5 H 0.082 0.918 6 N -0.689 5.689 7 C 0.551 3.449 8 O -0.578 6.578 9 C -0.119 4.119 10 C -0.104 4.104 11 C -0.078 4.078 12 C -0.108 4.108 13 C 0.145 3.855 14 N -0.506 5.506 15 C 0.066 3.934 16 C -0.148 4.148 17 C -0.049 4.049 18 C -0.052 4.052 19 C -0.116 4.116 20 C -0.126 4.126 21 C 0.180 3.820 22 N -0.596 5.596 23 C -0.248 4.248 24 H 0.082 0.918 25 C -0.048 4.048 26 N -0.936 5.936 27 Si 0.957 3.043 28 H -0.293 1.293 29 H -0.260 1.260 30 H -0.302 1.302 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.409 0.591 35 H 0.137 0.863 36 H 0.170 0.830 37 H 0.194 0.806 38 H 0.179 0.821 39 H 0.161 0.839 40 H 0.144 0.856 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.052 0.948 45 H -0.006 1.006 46 H 0.055 0.945 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -11.792 -14.132 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.049 0.951 4 C 0.036 3.964 5 H 0.100 0.900 6 N -0.339 5.339 7 C 0.339 3.661 8 O -0.460 6.460 9 C -0.124 4.124 10 C -0.123 4.123 11 C -0.098 4.098 12 C -0.110 4.110 13 C -0.027 4.027 14 N -0.214 5.214 15 C -0.076 4.076 16 C -0.168 4.168 17 C -0.054 4.054 18 C -0.071 4.071 19 C -0.154 4.154 20 C -0.165 4.165 21 C 0.054 3.946 22 N -0.320 5.320 23 C -0.378 4.378 24 H 0.099 0.901 25 C -0.243 4.243 26 N -0.582 5.582 27 Si 0.786 3.214 28 H -0.220 1.220 29 H -0.184 1.184 30 H -0.229 1.229 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.248 0.752 35 H 0.155 0.845 36 H 0.187 0.813 37 H 0.211 0.789 38 H 0.196 0.804 39 H 0.179 0.821 40 H 0.161 0.839 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.012 0.988 46 H 0.074 0.926 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.046 -12.204 -14.860 20.157 hybrid contribution 0.349 0.847 1.519 1.774 sum -5.697 -11.357 -13.341 18.423 Atomic orbital electron populations 1.21712 0.94181 1.01773 1.00937 1.20751 0.94569 0.93499 0.86183 0.95096 1.21313 0.92896 0.83310 0.98881 0.90015 1.45905 1.60609 1.18379 1.09025 1.18552 0.78392 0.85734 0.83392 1.90708 1.52037 1.67861 1.35392 1.20040 1.02595 0.94431 0.95287 1.21157 0.97573 0.96170 0.97349 1.21210 0.96927 0.93847 0.97766 1.19394 1.00553 0.97048 0.94046 1.23725 0.92297 0.89868 0.96783 1.67457 1.17178 1.37351 0.99422 1.22629 0.94889 0.93212 0.96918 1.22233 1.00176 0.96207 0.98162 1.18351 0.98198 0.94343 0.94487 1.21440 0.95106 0.92868 0.97680 1.21726 0.95453 1.00616 0.97638 1.21951 0.99749 0.98992 0.95821 1.20566 0.83394 0.95766 0.94881 1.44321 1.02966 1.65364 1.19305 1.19481 0.95519 1.36455 0.86379 0.90064 1.25784 0.98850 1.00845 0.98845 1.70183 1.25814 1.45742 1.16498 0.85436 0.77772 0.79089 0.79107 1.21983 1.18420 1.22944 0.93251 0.91846 0.92428 0.75236 0.84542 0.81288 0.78940 0.80438 0.82130 0.83868 0.91340 0.92636 0.92054 0.92904 0.98776 0.92620 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 7.72 71.98 0.56 -3.73 16 2 C 0.16 5.83 3.18 44.83 0.14 5.97 16 3 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.14 4.74 2.32 44.93 0.10 4.84 16 5 H 0.08 2.71 7.58 -2.39 -0.02 2.70 16 6 N -0.69 -21.44 3.40 -445.70 -1.51 -22.96 16 7 C 0.55 17.25 7.73 86.80 0.67 17.92 16 8 O -0.58 -21.12 15.97 -3.85 -0.06 -21.18 16 9 C -0.12 -3.13 5.87 -20.08 -0.12 -3.24 16 10 C -0.10 -2.33 9.44 22.29 0.21 -2.12 16 11 C -0.08 -1.42 9.77 22.26 0.22 -1.20 16 12 C -0.11 -2.11 5.75 -21.26 -0.12 -2.23 16 13 C 0.14 2.45 11.04 85.33 0.94 3.39 16 14 N -0.51 -9.80 10.29 -195.51 -2.01 -11.81 16 15 C 0.07 1.09 11.07 84.11 0.93 2.02 16 16 C -0.15 -2.52 9.88 22.42 0.22 -2.30 16 17 C -0.05 -1.03 5.74 -21.29 -0.12 -1.15 16 18 C -0.05 -1.24 9.38 22.79 0.21 -1.03 16 19 C -0.12 -3.87 5.58 30.62 0.17 -3.70 16 20 C -0.13 -4.55 5.93 30.67 0.18 -4.37 16 21 C 0.18 8.06 5.29 86.36 0.46 8.51 16 22 N -0.60 -26.29 2.65 -676.04 -1.79 -28.08 16 23 C -0.25 -11.86 8.57 84.03 0.72 -11.14 16 24 H 0.08 3.65 6.23 -2.91 -0.02 3.63 16 25 C -0.05 -2.45 4.94 84.86 0.42 -2.03 16 26 N -0.94 -52.37 11.23 21.65 0.24 -52.13 16 27 Si 0.96 41.35 29.58 68.60 2.03 43.38 16 28 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 29 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 30 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 31 H 0.05 1.79 7.62 -2.39 -0.02 1.78 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.85 6.37 -2.39 -0.02 1.84 16 34 H 0.41 12.76 5.73 -92.70 -0.53 12.23 16 35 H 0.14 3.02 6.34 -2.91 -0.02 3.00 16 36 H 0.17 1.99 8.06 -2.90 -0.02 1.96 16 37 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 40 H 0.14 3.36 7.62 -2.91 -0.02 3.34 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 1.91 7.53 -2.39 -0.02 1.89 16 45 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.06 2.85 6.14 -2.39 -0.01 2.83 16 47 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -63.63 374.18 3.15 -60.48 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.47 Total: 27.89 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.80 Total: 4.41 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -5.08 Total: -114.98 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.18 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -63.63 3.15 -60.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994165438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.454 kcal (2) G-P(sol) polarization free energy of solvation -63.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds