Wall clock time and date at job start Tue Mar 31 2020 22:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58807 * 2 1 4 4 C 1.53193 * 109.58686 * 239.57064 * 2 1 3 5 5 H 1.08991 * 109.49797 * 65.62730 * 4 2 1 6 6 N 1.46498 * 109.49416 * 305.56072 * 4 2 1 7 7 C 1.34773 * 119.99496 * 155.00491 * 6 4 2 8 8 O 1.21564 * 120.00460 * 359.97438 * 7 6 4 9 9 C 1.47776 * 119.99926 * 180.02562 * 7 6 4 10 10 C 1.40658 * 119.69824 * 359.72153 * 9 7 6 11 11 C 1.35848 * 120.87274 * 179.71210 * 10 9 7 12 12 C 1.40394 * 119.84437 * 0.55954 * 11 10 9 13 13 C 1.40643 * 121.96746 * 179.67698 * 12 11 10 14 14 C 1.36218 * 118.72824 * 180.02562 * 13 12 11 15 15 N 1.32593 * 121.90217 * 0.04464 * 14 13 12 16 16 C 1.31238 * 122.74066 * 359.97436 * 15 14 13 17 17 C 1.40547 * 119.89116 * 0.02562 * 16 15 14 18 18 C 1.38569 * 119.70014 * 180.02562 * 9 7 6 19 19 C 1.53038 * 109.30732 * 185.58223 * 4 2 1 20 20 C 1.53035 * 109.54440 * 61.36448 * 19 4 2 21 21 C 1.53625 * 109.24206 * 298.50797 * 20 19 4 22 22 N 1.46924 * 109.58437 * 120.27920 * 2 1 3 23 23 C 1.36939 * 120.63142 * 353.37194 * 22 2 1 24 24 H 1.08008 * 119.99950 * 29.70551 * 23 22 2 25 25 C 1.38812 * 120.00331 * 209.69728 * 23 22 2 26 26 N 1.31619 * 119.99930 * 24.36105 * 25 23 22 27 27 Si 1.86799 * 120.00411 * 204.36244 * 25 23 22 28 28 H 1.48505 * 109.46852 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47177 * 240.00095 * 27 25 23 30 30 H 1.48502 * 109.47044 * 119.99770 * 27 25 23 31 31 H 1.09000 * 109.47018 * 299.72377 * 1 2 3 32 32 H 1.09001 * 109.46778 * 59.71636 * 1 2 3 33 33 H 1.08992 * 109.47166 * 179.71702 * 1 2 3 34 34 H 0.96996 * 120.00543 * 335.00089 * 6 4 2 35 35 H 1.07999 * 119.55749 * 359.97438 * 10 9 7 36 36 H 1.08004 * 120.07302 * 180.28217 * 11 10 9 37 37 H 1.08001 * 120.63114 * 0.02562 * 13 12 11 38 38 H 1.08003 * 119.04575 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.05803 * 180.02562 * 16 15 14 40 40 H 1.08001 * 120.34402 * 359.97078 * 18 9 7 41 41 H 1.09002 * 109.45530 * 181.38954 * 19 4 2 42 42 H 1.08997 * 109.45977 * 301.33752 * 19 4 2 43 43 H 1.09004 * 109.49404 * 58.58395 * 20 19 4 44 44 H 1.09000 * 109.50137 * 178.67988 * 20 19 4 45 45 H 1.09002 * 109.73994 * 295.12108 * 21 20 19 46 46 H 1.08999 * 109.66637 * 174.54871 * 21 20 19 47 47 H 0.97004 * 119.99924 * 4.04686 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 1 1.7661 -0.1696 -2.1365 6 7 1.4509 -2.0693 -1.3048 7 6 1.3280 -2.6990 -2.4900 8 8 1.7086 -2.1563 -3.5090 9 6 0.7295 -4.0488 -2.5510 10 6 0.2957 -4.6729 -1.3675 11 6 -0.2631 -5.9107 -1.3966 12 6 -0.4016 -6.5862 -2.6196 13 6 -0.9673 -7.8713 -2.7006 14 6 -1.0692 -8.4660 -3.9218 15 7 -0.6507 -7.8688 -5.0292 16 6 -0.1129 -6.6716 -5.0301 17 6 0.0384 -5.9708 -3.8213 18 6 0.6067 -4.6907 -3.7729 19 6 3.5675 -0.8495 -1.1689 20 6 3.9569 -1.6656 0.0658 21 6 3.4657 -0.9403 1.3277 22 7 2.0226 -0.6980 1.1954 23 6 1.1537 -1.1098 2.1705 24 1 0.1389 -1.3750 1.9126 25 6 1.5771 -1.1866 3.4902 26 7 2.5877 -0.4501 3.9010 27 14 0.7128 -2.3351 4.6832 28 1 -0.3839 -3.0466 3.9786 29 1 0.1484 -1.5469 5.8081 30 1 1.6864 -3.3244 5.2112 31 1 -0.3633 0.5095 0.8925 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3633 -1.0276 -0.0051 34 1 1.1469 -2.5023 -0.4918 35 1 0.4044 -4.1593 -0.4237 36 1 -0.5960 -6.3760 -0.4805 37 1 -1.3142 -8.3769 -1.8115 38 1 -1.5031 -9.4527 -3.9900 39 1 0.2129 -6.2257 -5.9582 40 1 0.9453 -4.2095 -4.6785 41 1 3.9379 -1.3474 -2.0650 42 1 4.0062 0.1459 -1.0994 43 1 3.4983 -2.6528 0.0087 44 1 5.0412 -1.7695 0.1062 45 1 3.9878 0.0109 1.4324 46 1 3.6532 -1.5608 2.2040 47 1 2.9988 0.1889 3.2980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994168533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:58 Heat of formation + Delta-G solvation = 34.810258 kcal Electronic energy + Delta-G solvation = -29672.343968 eV Core-core repulsion = 25820.085683 eV Total energy + Delta-G solvation = -3852.258285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.10362 -39.87931 -38.04955 -36.95130 -34.29556 -33.20317 -32.68982 -32.07082 -31.19585 -29.97428 -29.18411 -26.46374 -25.13021 -24.72422 -24.12665 -22.60194 -21.98006 -21.17270 -20.77574 -18.91230 -18.37743 -17.91627 -17.14788 -16.78746 -15.96371 -15.49023 -15.25915 -15.04784 -14.66459 -14.45852 -14.37504 -14.06020 -13.86620 -13.74654 -13.67195 -13.41268 -13.34889 -13.13822 -12.71880 -12.18165 -12.08899 -11.87783 -11.53810 -11.46699 -11.31248 -11.06481 -10.87792 -10.69893 -10.44984 -10.30527 -10.18714 -10.13188 -9.91797 -9.87013 -9.64918 -9.35178 -9.22357 -8.70179 -8.44136 -8.30476 -6.96099 -6.15512 -3.35067 0.00718 0.50336 1.58739 2.45471 3.35050 3.39933 3.42061 3.44642 3.56147 3.89396 4.12519 4.29570 4.45196 4.47510 4.53142 4.74077 4.81646 4.94522 5.00881 5.08039 5.24418 5.32849 5.41438 5.44226 5.48033 5.55416 5.57484 5.69160 5.73649 5.77249 5.96252 6.06339 6.08354 6.13386 6.17007 6.28182 6.33946 6.34423 6.43562 6.48440 6.50397 6.58062 6.74443 6.84866 6.91785 7.01963 7.13430 7.67804 7.84875 7.92643 8.43158 8.49301 9.01128 9.75255 10.20090 11.12938 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.003432 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.584471 B = 8157.044804 C = 9598.039070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.160 3.840 3 H 0.038 0.962 4 C 0.134 3.866 5 H 0.079 0.921 6 N -0.693 5.693 7 C 0.551 3.449 8 O -0.550 6.550 9 C -0.128 4.128 10 C -0.068 4.068 11 C -0.117 4.117 12 C -0.009 4.009 13 C -0.158 4.158 14 C 0.079 3.921 15 N -0.494 5.494 16 C 0.157 3.843 17 C -0.124 4.124 18 C -0.022 4.022 19 C -0.121 4.121 20 C -0.135 4.135 21 C 0.151 3.849 22 N -0.594 5.594 23 C -0.355 4.355 24 H 0.062 0.938 25 C -0.020 4.020 26 N -0.914 5.914 27 Si 1.067 2.933 28 H -0.292 1.292 29 H -0.294 1.294 30 H -0.291 1.291 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.409 0.591 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.166 0.834 40 H 0.147 0.853 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.017 0.983 46 H 0.078 0.922 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 -10.727 -12.456 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 H 0.056 0.944 4 C 0.028 3.972 5 H 0.097 0.903 6 N -0.344 5.344 7 C 0.337 3.663 8 O -0.430 6.430 9 C -0.131 4.131 10 C -0.087 4.087 11 C -0.135 4.135 12 C -0.014 4.014 13 C -0.178 4.178 14 C -0.063 4.063 15 N -0.202 5.202 16 C -0.015 4.015 17 C -0.126 4.126 18 C -0.043 4.043 19 C -0.160 4.160 20 C -0.174 4.174 21 C 0.025 3.975 22 N -0.319 5.319 23 C -0.484 4.484 24 H 0.080 0.920 25 C -0.223 4.223 26 N -0.554 5.554 27 Si 0.898 3.102 28 H -0.218 1.218 29 H -0.221 1.221 30 H -0.217 1.217 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.247 0.753 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.170 0.830 39 H 0.183 0.817 40 H 0.165 0.835 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.096 0.904 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.797 -11.470 -12.262 17.462 hybrid contribution -0.007 0.887 -0.194 0.908 sum -4.803 -10.583 -12.456 17.036 Atomic orbital electron populations 1.21756 0.95362 1.01463 1.00466 1.20722 0.93639 0.93668 0.86687 0.94427 1.21551 0.92855 0.82865 0.99927 0.90333 1.45948 1.60927 1.18583 1.08922 1.18185 0.78954 0.85057 0.84068 1.90735 1.50811 1.67162 1.34306 1.20100 1.03132 0.95723 0.94131 1.21224 0.94610 0.94909 0.97989 1.20898 1.00575 0.95147 0.96902 1.18309 0.95623 0.94162 0.93343 1.21950 1.01091 0.94894 0.99863 1.22230 0.96577 0.99756 0.87778 1.67469 1.10539 1.10639 1.31533 1.23297 0.92004 0.89607 0.96584 1.19000 1.02665 0.96163 0.94758 1.21422 0.92952 0.91845 0.98094 1.21773 0.95478 1.00497 0.98254 1.22092 0.99092 0.99554 0.96660 1.21064 0.84164 0.96770 0.95502 1.44273 1.02565 1.65478 1.19563 1.19958 0.96251 1.44011 0.88179 0.92015 1.25840 1.00137 1.00549 0.95820 1.70719 1.25947 1.20995 1.37712 0.83486 0.75155 0.76029 0.75563 1.21818 1.22139 1.21740 0.91727 0.94196 0.92820 0.75307 0.84531 0.84403 0.84253 0.82962 0.81693 0.83489 0.92771 0.91806 0.92524 0.93201 0.96460 0.90360 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.73 37.16 0.29 -2.07 16 2 C 0.16 3.03 3.20 -67.60 -0.22 2.81 16 3 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 4 C 0.13 2.29 2.33 -67.81 -0.16 2.13 16 5 H 0.08 1.35 7.57 -51.93 -0.39 0.96 16 6 N -0.69 -11.17 3.41 -54.66 -0.19 -11.36 16 7 C 0.55 8.80 7.73 -12.36 -0.10 8.70 16 8 O -0.55 -10.11 15.96 5.31 0.08 -10.02 16 9 C -0.13 -1.72 5.87 -104.96 -0.62 -2.34 16 10 C -0.07 -0.82 9.44 -39.53 -0.37 -1.20 16 11 C -0.12 -1.26 9.77 -39.63 -0.39 -1.65 16 12 C -0.01 -0.10 5.75 -106.74 -0.61 -0.71 16 13 C -0.16 -1.45 9.87 -39.40 -0.39 -1.84 16 14 C 0.08 0.74 11.07 -17.95 -0.20 0.54 16 15 N -0.49 -5.43 10.30 -13.12 -0.14 -5.56 16 16 C 0.16 1.60 11.05 -16.94 -0.19 1.41 16 17 C -0.12 -1.40 5.74 -106.87 -0.61 -2.01 16 18 C -0.02 -0.27 9.37 -38.75 -0.36 -0.63 16 19 C -0.12 -2.05 5.58 -26.69 -0.15 -2.20 16 20 C -0.13 -2.42 5.95 -26.39 -0.16 -2.57 16 21 C 0.15 3.23 4.71 -3.48 -0.02 3.21 16 22 N -0.59 -12.99 2.48 -164.50 -0.41 -13.40 16 23 C -0.36 -8.64 8.48 -15.06 -0.13 -8.77 16 24 H 0.06 1.49 6.30 -52.48 -0.33 1.15 16 25 C -0.02 -0.53 4.69 -17.43 -0.08 -0.61 16 26 N -0.91 -25.68 12.51 55.49 0.69 -24.98 16 27 Si 1.07 23.46 29.98 -169.99 -5.10 18.37 16 28 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 29 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 30 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 31 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.94 6.39 -51.93 -0.33 0.61 16 34 H 0.41 6.69 5.75 -40.82 -0.23 6.46 16 35 H 0.14 1.65 6.34 -52.49 -0.33 1.32 16 36 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.15 1.65 7.61 -52.49 -0.40 1.25 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 46 H 0.08 1.90 6.41 -51.93 -0.33 1.57 16 47 H 0.27 7.69 6.64 -40.82 -0.27 7.42 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -29.77 373.22 -10.30 -40.07 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.42 Total: 9.05 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -4.45 Total: -7.78 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.04 Total: -55.31 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.10 Total: 18.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.77 -10.30 -40.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994168533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.879 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds