Wall clock time and date at job start Tue Mar 31 2020 22:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58807 * 2 1 4 4 C 1.53193 * 109.58686 * 239.57064 * 2 1 3 5 5 H 1.08991 * 109.49797 * 65.62730 * 4 2 1 6 6 N 1.46498 * 109.49416 * 305.56072 * 4 2 1 7 7 C 1.34773 * 119.99496 * 155.00491 * 6 4 2 8 8 O 1.21564 * 120.00460 * 359.97438 * 7 6 4 9 9 C 1.47776 * 119.99926 * 180.02562 * 7 6 4 10 10 C 1.40658 * 119.69824 * 359.72153 * 9 7 6 11 11 C 1.35848 * 120.87274 * 179.71210 * 10 9 7 12 12 C 1.40394 * 119.84437 * 0.55954 * 11 10 9 13 13 C 1.40643 * 121.96746 * 179.67698 * 12 11 10 14 14 C 1.36218 * 118.72824 * 180.02562 * 13 12 11 15 15 N 1.32593 * 121.90217 * 0.04464 * 14 13 12 16 16 C 1.31238 * 122.74066 * 359.97436 * 15 14 13 17 17 C 1.40547 * 119.89116 * 0.02562 * 16 15 14 18 18 C 1.38569 * 119.70014 * 180.02562 * 9 7 6 19 19 C 1.53038 * 109.30732 * 185.58223 * 4 2 1 20 20 C 1.53035 * 109.54440 * 61.36448 * 19 4 2 21 21 C 1.53625 * 109.24206 * 298.50797 * 20 19 4 22 22 N 1.46924 * 109.58437 * 120.27920 * 2 1 3 23 23 C 1.36939 * 120.63142 * 353.37194 * 22 2 1 24 24 H 1.08008 * 119.99950 * 29.70551 * 23 22 2 25 25 C 1.38812 * 120.00331 * 209.69728 * 23 22 2 26 26 N 1.31619 * 119.99930 * 24.36105 * 25 23 22 27 27 Si 1.86799 * 120.00411 * 204.36244 * 25 23 22 28 28 H 1.48505 * 109.46852 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47177 * 240.00095 * 27 25 23 30 30 H 1.48502 * 109.47044 * 119.99770 * 27 25 23 31 31 H 1.09000 * 109.47018 * 299.72377 * 1 2 3 32 32 H 1.09001 * 109.46778 * 59.71636 * 1 2 3 33 33 H 1.08992 * 109.47166 * 179.71702 * 1 2 3 34 34 H 0.96996 * 120.00543 * 335.00089 * 6 4 2 35 35 H 1.07999 * 119.55749 * 359.97438 * 10 9 7 36 36 H 1.08004 * 120.07302 * 180.28217 * 11 10 9 37 37 H 1.08001 * 120.63114 * 0.02562 * 13 12 11 38 38 H 1.08003 * 119.04575 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.05803 * 180.02562 * 16 15 14 40 40 H 1.08001 * 120.34402 * 359.97078 * 18 9 7 41 41 H 1.09002 * 109.45530 * 181.38954 * 19 4 2 42 42 H 1.08997 * 109.45977 * 301.33752 * 19 4 2 43 43 H 1.09004 * 109.49404 * 58.58395 * 20 19 4 44 44 H 1.09000 * 109.50137 * 178.67988 * 20 19 4 45 45 H 1.09002 * 109.73994 * 295.12108 * 21 20 19 46 46 H 1.08999 * 109.66637 * 174.54871 * 21 20 19 47 47 H 0.97004 * 119.99924 * 4.04686 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 1 1.7661 -0.1696 -2.1365 6 7 1.4509 -2.0693 -1.3048 7 6 1.3280 -2.6990 -2.4900 8 8 1.7086 -2.1563 -3.5090 9 6 0.7295 -4.0488 -2.5510 10 6 0.2957 -4.6729 -1.3675 11 6 -0.2631 -5.9107 -1.3966 12 6 -0.4016 -6.5862 -2.6196 13 6 -0.9673 -7.8713 -2.7006 14 6 -1.0692 -8.4660 -3.9218 15 7 -0.6507 -7.8688 -5.0292 16 6 -0.1129 -6.6716 -5.0301 17 6 0.0384 -5.9708 -3.8213 18 6 0.6067 -4.6907 -3.7729 19 6 3.5675 -0.8495 -1.1689 20 6 3.9569 -1.6656 0.0658 21 6 3.4657 -0.9403 1.3277 22 7 2.0226 -0.6980 1.1954 23 6 1.1537 -1.1098 2.1705 24 1 0.1389 -1.3750 1.9126 25 6 1.5771 -1.1866 3.4902 26 7 2.5877 -0.4501 3.9010 27 14 0.7128 -2.3351 4.6832 28 1 -0.3839 -3.0466 3.9786 29 1 0.1484 -1.5469 5.8081 30 1 1.6864 -3.3244 5.2112 31 1 -0.3633 0.5095 0.8925 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3633 -1.0276 -0.0051 34 1 1.1469 -2.5023 -0.4918 35 1 0.4044 -4.1593 -0.4237 36 1 -0.5960 -6.3760 -0.4805 37 1 -1.3142 -8.3769 -1.8115 38 1 -1.5031 -9.4527 -3.9900 39 1 0.2129 -6.2257 -5.9582 40 1 0.9453 -4.2095 -4.6785 41 1 3.9379 -1.3474 -2.0650 42 1 4.0062 0.1459 -1.0994 43 1 3.4983 -2.6528 0.0087 44 1 5.0412 -1.7695 0.1062 45 1 3.9878 0.0109 1.4324 46 1 3.6532 -1.5608 2.2040 47 1 2.9988 0.1889 3.2980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994168533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:57 Heat of formation + Delta-G solvation = 19.523664 kcal Electronic energy + Delta-G solvation = -29673.006844 eV Core-core repulsion = 25820.085683 eV Total energy + Delta-G solvation = -3852.921162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.98432 -41.11801 -39.43330 -37.94149 -35.90144 -34.18257 -34.00650 -33.56357 -32.32428 -31.01002 -30.54967 -27.98391 -26.81013 -25.81161 -24.96218 -23.75548 -23.20042 -22.63832 -22.10887 -20.41758 -19.46936 -18.92909 -18.71125 -17.72904 -16.94134 -16.89195 -16.38749 -16.23032 -15.96932 -15.86907 -15.43160 -15.36639 -15.25719 -14.83962 -14.81378 -14.67255 -14.53342 -14.25285 -14.23534 -13.48666 -13.23179 -13.05700 -12.89772 -12.78799 -12.73401 -12.53921 -12.31023 -12.29201 -11.85788 -11.83649 -11.73268 -11.53507 -11.24682 -11.09398 -10.97196 -10.52163 -10.40990 -10.25718 -9.98467 -9.12362 -8.84098 -8.14254 -5.32057 -0.81907 -0.35252 0.76770 1.50181 1.63891 1.70375 1.84115 2.16909 2.33353 2.69939 3.04685 3.30987 3.44548 3.46451 3.50818 3.62669 3.64842 3.85104 3.92117 3.96992 3.99063 4.05403 4.09104 4.25644 4.29220 4.45671 4.56061 4.59959 4.63142 4.67111 4.77748 4.83573 4.85587 4.87068 4.93077 4.94294 5.02367 5.09315 5.18352 5.23615 5.29432 5.31342 5.37537 5.39340 5.56327 5.61662 5.69767 5.99752 6.48499 6.56919 6.93926 7.10989 7.17478 7.85732 8.31203 9.11673 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.003432 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.584471 B = 8157.044804 C = 9598.039070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.157 3.843 3 H 0.031 0.969 4 C 0.143 3.857 5 H 0.082 0.918 6 N -0.692 5.692 7 C 0.554 3.446 8 O -0.578 6.578 9 C -0.147 4.147 10 C -0.079 4.079 11 C -0.110 4.110 12 C -0.021 4.021 13 C -0.156 4.156 14 C 0.074 3.926 15 N -0.512 5.512 16 C 0.153 3.847 17 C -0.135 4.135 18 C -0.017 4.017 19 C -0.116 4.116 20 C -0.121 4.121 21 C 0.158 3.842 22 N -0.603 5.603 23 C -0.338 4.338 24 H 0.068 0.932 25 C -0.076 4.076 26 N -0.951 5.951 27 Si 1.111 2.889 28 H -0.264 1.264 29 H -0.302 1.302 30 H -0.295 1.295 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.408 0.592 35 H 0.134 0.866 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.187 0.813 40 H 0.151 0.849 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.002 0.998 46 H 0.046 0.954 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -12.994 -13.659 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.051 3.949 3 H 0.049 0.951 4 C 0.036 3.964 5 H 0.100 0.900 6 N -0.342 5.342 7 C 0.342 3.658 8 O -0.460 6.460 9 C -0.150 4.150 10 C -0.099 4.099 11 C -0.128 4.128 12 C -0.026 4.026 13 C -0.175 4.175 14 C -0.068 4.068 15 N -0.220 5.220 16 C -0.018 4.018 17 C -0.137 4.137 18 C -0.038 4.038 19 C -0.154 4.154 20 C -0.160 4.160 21 C 0.033 3.967 22 N -0.329 5.329 23 C -0.468 4.468 24 H 0.086 0.914 25 C -0.272 4.272 26 N -0.593 5.593 27 Si 0.938 3.062 28 H -0.188 1.188 29 H -0.230 1.230 30 H -0.222 1.222 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.152 0.848 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.197 0.803 39 H 0.204 0.796 40 H 0.168 0.832 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.020 0.980 46 H 0.065 0.935 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.252 -13.746 -13.501 20.257 hybrid contribution 0.391 1.536 0.063 1.586 sum -5.862 -12.210 -13.438 19.080 Atomic orbital electron populations 1.21671 0.94264 1.01640 1.00664 1.20841 0.94561 0.93287 0.86207 0.95120 1.21340 0.92946 0.83377 0.98687 0.89981 1.45887 1.61008 1.18160 1.09145 1.18511 0.78228 0.85744 0.83306 1.90712 1.52145 1.68104 1.35030 1.19938 1.04947 0.94807 0.95302 1.21199 0.95639 0.95700 0.97340 1.21155 0.99362 0.94406 0.97850 1.18613 0.95657 0.95083 0.93279 1.22260 1.00199 0.94043 1.00995 1.22754 0.95826 1.00749 0.87482 1.67536 1.10991 1.10943 1.32545 1.23646 0.91596 0.89456 0.97109 1.19126 1.03030 0.95962 0.95627 1.21492 0.92431 0.92145 0.97756 1.21726 0.95392 1.00670 0.97634 1.21926 0.99926 0.98959 0.95198 1.20885 0.84116 0.95786 0.95956 1.44434 1.02518 1.66034 1.19876 1.20210 0.96580 1.41609 0.88373 0.91428 1.27002 1.00596 1.01655 0.97965 1.70846 1.28110 1.22686 1.37689 0.82895 0.74932 0.74484 0.73915 1.18827 1.22964 1.22155 0.93630 0.91834 0.92619 0.75363 0.84829 0.81968 0.81350 0.80265 0.79618 0.83163 0.92275 0.91192 0.92734 0.91644 0.97961 0.93530 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 7.73 71.98 0.56 -3.75 16 2 C 0.16 5.90 3.20 44.98 0.14 6.04 16 3 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.14 4.75 2.33 45.07 0.10 4.86 16 5 H 0.08 2.73 7.57 -2.39 -0.02 2.71 16 6 N -0.69 -21.71 3.41 -445.12 -1.52 -23.23 16 7 C 0.55 17.27 7.73 86.77 0.67 17.94 16 8 O -0.58 -20.85 15.96 -3.92 -0.06 -20.91 16 9 C -0.15 -3.83 5.87 -20.09 -0.12 -3.95 16 10 C -0.08 -1.82 9.44 22.31 0.21 -1.61 16 11 C -0.11 -2.10 9.77 22.24 0.22 -1.88 16 12 C -0.02 -0.41 5.75 -21.23 -0.12 -0.53 16 13 C -0.16 -2.33 9.87 22.39 0.22 -2.10 16 14 C 0.07 1.16 11.07 84.11 0.93 2.09 16 15 N -0.51 -10.05 10.30 -195.41 -2.01 -12.06 16 16 C 0.15 2.83 11.05 85.34 0.94 3.77 16 17 C -0.14 -2.82 5.74 -21.32 -0.12 -2.95 16 18 C -0.02 -0.40 9.37 22.81 0.21 -0.19 16 19 C -0.12 -3.79 5.58 30.62 0.17 -3.62 16 20 C -0.12 -4.28 5.95 30.82 0.18 -4.10 16 21 C 0.16 6.93 4.71 86.51 0.41 7.34 16 22 N -0.60 -26.60 2.48 -674.36 -1.67 -28.27 16 23 C -0.34 -16.46 8.48 84.03 0.71 -15.75 16 24 H 0.07 3.19 6.30 -2.91 -0.02 3.17 16 25 C -0.08 -3.96 4.69 84.86 0.40 -3.56 16 26 N -0.95 -55.03 12.51 21.65 0.27 -54.76 16 27 Si 1.11 47.37 29.98 68.60 2.06 49.43 16 28 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 29 H -0.30 -13.17 7.11 99.48 0.71 -12.47 16 30 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 31 H 0.04 1.73 7.62 -2.39 -0.02 1.71 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.88 6.39 -2.39 -0.02 1.87 16 34 H 0.41 13.03 5.75 -92.71 -0.53 12.50 16 35 H 0.13 3.08 6.34 -2.91 -0.02 3.06 16 36 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.15 3.26 7.61 -2.91 -0.02 3.23 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.05 1.96 7.53 -2.39 -0.02 1.94 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.00 0.11 7.84 -2.39 -0.02 0.09 16 46 H 0.05 2.33 6.41 -2.39 -0.02 2.32 16 47 H 0.25 15.08 6.64 -92.71 -0.62 14.46 16 Total: -1.00 -64.79 373.22 3.40 -61.39 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.62 Total: 30.35 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.72 Total: -1.94 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -4.93 Total: -118.32 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.06 Total: -20.91 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.06 Total: 49.43 kcal Total: -64.79 3.40 -61.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994168533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.913 kcal (2) G-P(sol) polarization free energy of solvation -64.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds