Wall clock time and date at job start Tue Mar 31 2020 22:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.58394 * 2 1 4 4 C 1.53192 * 109.70108 * 120.35277 * 2 1 3 5 5 H 1.08997 * 109.49640 * 54.54048 * 4 2 1 6 6 N 1.46501 * 109.49747 * 294.44484 * 4 2 1 7 7 C 1.34783 * 119.99805 * 155.00159 * 6 4 2 8 8 O 1.21559 * 119.99779 * 359.97438 * 7 6 4 9 9 C 1.47771 * 119.99885 * 180.02562 * 7 6 4 10 10 C 1.40650 * 119.69984 * 359.72335 * 9 7 6 11 11 C 1.35845 * 120.88006 * 179.75102 * 10 9 7 12 12 C 1.40401 * 119.83665 * 0.52540 * 11 10 9 13 13 C 1.40636 * 121.96691 * 179.69676 * 12 11 10 14 14 C 1.36223 * 118.73283 * 180.02562 * 13 12 11 15 15 N 1.32590 * 121.89157 * 0.04639 * 14 13 12 16 16 C 1.31239 * 122.74967 * 359.96904 * 15 14 13 17 17 C 1.40545 * 119.88445 * 0.02562 * 16 15 14 18 18 C 1.38566 * 119.69565 * 180.02562 * 9 7 6 19 19 C 1.53104 * 109.32894 * 174.49497 * 4 2 1 20 20 C 1.53041 * 109.50473 * 298.65706 * 19 4 2 21 21 C 1.53189 * 109.33932 * 61.34606 * 20 19 4 22 22 N 1.46925 * 108.78003 * 305.35354 * 21 20 19 23 23 C 1.36937 * 120.63539 * 233.63403 * 22 21 20 24 24 H 1.07992 * 120.00562 * 150.14727 * 23 22 21 25 25 C 1.38819 * 119.99509 * 330.14826 * 23 22 21 26 26 N 1.31619 * 119.99679 * 344.49680 * 25 23 22 27 27 Si 1.86797 * 120.00224 * 164.49820 * 25 23 22 28 28 H 1.48503 * 109.47079 * 89.99816 * 27 25 23 29 29 H 1.48498 * 109.47215 * 210.00127 * 27 25 23 30 30 H 1.48499 * 109.46927 * 330.00030 * 27 25 23 31 31 H 1.09002 * 109.46513 * 180.27992 * 1 2 3 32 32 H 1.08998 * 109.47246 * 300.28492 * 1 2 3 33 33 H 1.09000 * 109.46740 * 60.28886 * 1 2 3 34 34 H 0.96996 * 120.00099 * 335.00217 * 6 4 2 35 35 H 1.08006 * 119.56233 * 359.97438 * 10 9 7 36 36 H 1.08001 * 120.08157 * 180.23494 * 11 10 9 37 37 H 1.08008 * 120.63314 * 0.02562 * 13 12 11 38 38 H 1.07997 * 119.05196 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.05884 * 179.97438 * 16 15 14 40 40 H 1.07997 * 120.34960 * 359.97438 * 18 9 7 41 41 H 1.09000 * 109.50482 * 178.63304 * 19 4 2 42 42 H 1.09000 * 109.45246 * 58.65115 * 19 4 2 43 43 H 1.09002 * 109.49496 * 301.38485 * 20 19 4 44 44 H 1.08993 * 109.50047 * 181.31789 * 20 19 4 45 45 H 1.09001 * 109.58441 * 65.13899 * 21 20 19 46 46 H 1.08998 * 109.59005 * 185.56223 * 21 20 19 47 47 H 0.97009 * 119.99606 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 1.2446 5 1 1.6080 -1.7256 1.2906 6 7 1.6733 0.0261 2.4433 7 6 1.5526 -0.6062 3.6275 8 8 1.7530 -1.8030 3.7006 9 6 1.1757 0.1551 4.8366 10 6 0.9500 1.5404 4.7456 11 6 0.5975 2.2628 5.8407 12 6 0.4658 1.6258 7.0850 13 6 0.1093 2.3310 8.2484 14 6 0.0007 1.6469 9.4214 15 7 0.2219 0.3416 9.4941 16 6 0.5580 -0.3807 8.4512 17 6 0.6969 0.2289 7.1925 18 6 1.0539 -0.5012 6.0509 19 6 3.5712 -0.8445 1.1679 20 6 3.9603 -1.6607 -0.0669 21 6 3.4655 -0.9425 -1.3263 22 7 2.0227 -0.6980 -1.1953 23 6 1.1534 -1.1134 -2.1685 24 1 0.1404 -1.3828 -1.9086 25 6 1.5744 -1.1882 -3.4892 26 7 2.6833 -0.5848 -3.8615 27 14 0.5672 -2.1451 -4.7379 28 1 -0.4295 -1.2415 -5.3668 29 1 1.4672 -2.6940 -5.7837 30 1 -0.1369 -3.2604 -4.0556 31 1 -0.3632 -1.0277 0.0050 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5094 -0.8926 34 1 1.5131 0.9810 2.3849 35 1 1.0548 2.0358 3.7916 36 1 0.4236 3.3253 5.7554 37 1 -0.0748 3.3947 8.2126 38 1 -0.2731 2.1832 10.3179 39 1 0.7283 -1.4416 8.5601 40 1 1.2325 -1.5643 6.1169 41 1 3.9440 -1.3412 2.0637 42 1 4.0078 0.1517 1.0970 43 1 3.5037 -2.6488 -0.0085 44 1 5.0446 -1.7629 -0.1086 45 1 3.9887 0.0076 -1.4345 46 1 3.6525 -1.5666 -2.2001 47 1 2.9773 -0.6367 -4.7845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994168539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:09 Heat of formation + Delta-G solvation = 37.012579 kcal Electronic energy + Delta-G solvation = -28782.979366 eV Core-core repulsion = 24930.816581 eV Total energy + Delta-G solvation = -3852.162786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.22229 -39.84708 -37.94266 -37.04339 -34.44762 -33.32689 -32.70423 -31.95651 -31.34763 -30.10413 -29.13533 -26.39580 -25.19144 -24.74039 -24.26491 -22.73764 -22.10206 -20.74420 -20.68986 -19.58172 -18.28343 -18.03659 -17.06554 -16.38272 -16.06404 -15.67159 -15.37847 -15.04412 -14.89018 -14.45424 -14.39816 -14.05323 -13.92124 -13.77898 -13.71125 -13.45083 -13.38461 -12.85717 -12.59797 -12.29023 -12.24720 -11.74573 -11.62248 -11.56300 -11.14973 -10.95649 -10.76602 -10.61945 -10.56331 -10.33897 -10.19261 -10.07190 -10.04927 -9.86224 -9.66684 -9.49397 -9.39919 -8.75954 -8.49519 -8.42552 -6.69859 -5.82716 -3.27322 -0.11247 0.36538 1.46615 2.32182 3.21515 3.24716 3.35191 3.42849 3.45587 3.76965 4.02403 4.15473 4.30355 4.39526 4.46112 4.59138 4.66480 4.79586 4.85362 5.20335 5.25810 5.31365 5.34604 5.40843 5.47182 5.52353 5.58002 5.62288 5.75163 5.91082 5.94099 5.96266 6.04304 6.17341 6.22842 6.29281 6.35293 6.36981 6.49335 6.58204 6.66934 6.71880 6.81485 6.94843 7.02630 7.36570 7.57940 7.62728 7.65221 7.79011 8.29618 8.42180 9.16972 9.79534 10.36068 11.26035 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026390 B = 0.002249 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.769002 B =12445.205595 C =12686.551515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.130 3.870 5 H 0.088 0.912 6 N -0.711 5.711 7 C 0.553 3.447 8 O -0.537 6.537 9 C -0.130 4.130 10 C -0.070 4.070 11 C -0.118 4.118 12 C -0.010 4.010 13 C -0.160 4.160 14 C 0.082 3.918 15 N -0.493 5.493 16 C 0.158 3.842 17 C -0.123 4.123 18 C -0.019 4.019 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.170 3.830 22 N -0.581 5.581 23 C -0.253 4.253 24 H 0.070 0.930 25 C 0.005 3.995 26 N -0.901 5.901 27 Si 0.901 3.099 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.279 1.279 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.395 0.605 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.167 0.833 40 H 0.149 0.851 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.019 0.981 46 H 0.087 0.913 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 7.114 21.846 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.025 3.975 5 H 0.106 0.894 6 N -0.361 5.361 7 C 0.340 3.660 8 O -0.415 6.415 9 C -0.133 4.133 10 C -0.089 4.089 11 C -0.136 4.136 12 C -0.015 4.015 13 C -0.180 4.180 14 C -0.061 4.061 15 N -0.201 5.201 16 C -0.013 4.013 17 C -0.125 4.125 18 C -0.040 4.040 19 C -0.155 4.155 20 C -0.180 4.180 21 C 0.044 3.956 22 N -0.305 5.305 23 C -0.382 4.382 24 H 0.087 0.913 25 C -0.194 4.194 26 N -0.545 5.545 27 Si 0.731 3.269 28 H -0.214 1.214 29 H -0.216 1.216 30 H -0.204 1.204 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.171 0.829 39 H 0.184 0.816 40 H 0.167 0.833 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.106 0.894 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.854 5.999 22.545 23.503 hybrid contribution -0.375 0.592 -1.593 1.740 sum -3.229 6.590 20.952 22.200 Atomic orbital electron populations 1.21825 0.95627 1.01739 1.00263 1.20560 0.93252 0.93547 0.86673 0.95537 1.21866 0.95210 0.96941 0.83495 0.89392 1.46085 1.69482 1.12225 1.08321 1.18149 0.77633 0.87111 0.83156 1.90782 1.50624 1.14455 1.85632 1.20102 1.04645 0.94038 0.94537 1.21102 0.95707 0.92824 0.99290 1.20865 1.01177 1.00362 0.91209 1.18300 0.96024 0.92688 0.94492 1.21938 1.01902 1.01285 0.92840 1.22258 0.96087 0.90070 0.97691 1.67483 1.12021 1.07853 1.32743 1.23342 0.91397 1.00049 0.86517 1.19017 1.03805 0.93914 0.95801 1.21473 0.92034 1.00587 0.89868 1.21775 0.95239 1.00111 0.98423 1.22185 0.99276 0.99741 0.96807 1.20832 0.83079 0.97201 0.94467 1.44026 1.03102 1.65136 1.18198 1.19136 0.95260 1.37846 0.85992 0.91255 1.25093 0.97893 0.99437 0.96992 1.70028 1.24177 1.43633 1.16698 0.86319 0.79383 0.80020 0.81179 1.21395 1.21565 1.20420 0.92624 0.94370 0.91658 0.77015 0.84937 0.84502 0.84264 0.82904 0.81555 0.83321 0.93122 0.92745 0.92466 0.92955 0.96252 0.89443 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.84 37.16 0.29 -2.17 16 2 C 0.17 3.26 3.03 -67.60 -0.20 3.05 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.13 2.28 2.00 -67.78 -0.14 2.14 16 5 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 6 N -0.71 -9.93 4.54 -54.62 -0.25 -10.17 16 7 C 0.55 8.06 7.73 -12.36 -0.10 7.97 16 8 O -0.54 -9.75 15.96 5.31 0.08 -9.67 16 9 C -0.13 -1.49 5.87 -104.97 -0.62 -2.10 16 10 C -0.07 -0.62 9.44 -39.53 -0.37 -1.00 16 11 C -0.12 -0.94 9.77 -39.63 -0.39 -1.33 16 12 C -0.01 -0.09 5.75 -106.74 -0.61 -0.70 16 13 C -0.16 -1.19 9.87 -39.40 -0.39 -1.58 16 14 C 0.08 0.66 11.07 -17.95 -0.20 0.46 16 15 N -0.49 -4.88 10.30 -13.12 -0.14 -5.01 16 16 C 0.16 1.44 11.05 -16.94 -0.19 1.25 16 17 C -0.12 -1.21 5.74 -106.87 -0.61 -1.82 16 18 C -0.02 -0.20 9.37 -38.75 -0.36 -0.56 16 19 C -0.12 -2.05 5.47 -26.66 -0.15 -2.19 16 20 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 21 C 0.17 3.93 5.28 -3.71 -0.02 3.91 16 22 N -0.58 -13.84 2.99 -164.77 -0.49 -14.34 16 23 C -0.25 -6.61 8.57 -15.06 -0.13 -6.73 16 24 H 0.07 1.78 6.24 -52.49 -0.33 1.45 16 25 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 26 N -0.90 -25.40 11.23 55.49 0.62 -24.78 16 27 Si 0.90 21.26 29.58 -169.99 -5.03 16.24 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 30 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 31 H 0.05 1.06 7.43 -51.93 -0.39 0.67 16 32 H 0.04 0.56 7.81 -51.93 -0.41 0.15 16 33 H 0.06 1.26 7.63 -51.93 -0.40 0.86 16 34 H 0.39 4.41 6.58 -40.82 -0.27 4.15 16 35 H 0.13 0.92 6.34 -52.48 -0.33 0.59 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.15 1.52 7.61 -52.49 -0.40 1.12 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 2.27 6.15 -51.93 -0.32 1.96 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -31.90 377.54 -10.53 -42.42 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.59 Total: 3.87 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -4.43 Total: -4.25 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.25 Total: -54.30 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.90 -10.53 -42.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994168539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.435 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds