Wall clock time and date at job start Tue Mar 31 2020 22:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.58394 * 2 1 4 4 C 1.53192 * 109.70108 * 120.35277 * 2 1 3 5 5 H 1.08997 * 109.49640 * 54.54048 * 4 2 1 6 6 N 1.46501 * 109.49747 * 294.44484 * 4 2 1 7 7 C 1.34783 * 119.99805 * 155.00159 * 6 4 2 8 8 O 1.21559 * 119.99779 * 359.97438 * 7 6 4 9 9 C 1.47771 * 119.99885 * 180.02562 * 7 6 4 10 10 C 1.40650 * 119.69984 * 359.72335 * 9 7 6 11 11 C 1.35845 * 120.88006 * 179.75102 * 10 9 7 12 12 C 1.40401 * 119.83665 * 0.52540 * 11 10 9 13 13 C 1.40636 * 121.96691 * 179.69676 * 12 11 10 14 14 C 1.36223 * 118.73283 * 180.02562 * 13 12 11 15 15 N 1.32590 * 121.89157 * 0.04639 * 14 13 12 16 16 C 1.31239 * 122.74967 * 359.96904 * 15 14 13 17 17 C 1.40545 * 119.88445 * 0.02562 * 16 15 14 18 18 C 1.38566 * 119.69565 * 180.02562 * 9 7 6 19 19 C 1.53104 * 109.32894 * 174.49497 * 4 2 1 20 20 C 1.53041 * 109.50473 * 298.65706 * 19 4 2 21 21 C 1.53189 * 109.33932 * 61.34606 * 20 19 4 22 22 N 1.46925 * 108.78003 * 305.35354 * 21 20 19 23 23 C 1.36937 * 120.63539 * 233.63403 * 22 21 20 24 24 H 1.07992 * 120.00562 * 150.14727 * 23 22 21 25 25 C 1.38819 * 119.99509 * 330.14826 * 23 22 21 26 26 N 1.31619 * 119.99679 * 344.49680 * 25 23 22 27 27 Si 1.86797 * 120.00224 * 164.49820 * 25 23 22 28 28 H 1.48503 * 109.47079 * 89.99816 * 27 25 23 29 29 H 1.48498 * 109.47215 * 210.00127 * 27 25 23 30 30 H 1.48499 * 109.46927 * 330.00030 * 27 25 23 31 31 H 1.09002 * 109.46513 * 180.27992 * 1 2 3 32 32 H 1.08998 * 109.47246 * 300.28492 * 1 2 3 33 33 H 1.09000 * 109.46740 * 60.28886 * 1 2 3 34 34 H 0.96996 * 120.00099 * 335.00217 * 6 4 2 35 35 H 1.08006 * 119.56233 * 359.97438 * 10 9 7 36 36 H 1.08001 * 120.08157 * 180.23494 * 11 10 9 37 37 H 1.08008 * 120.63314 * 0.02562 * 13 12 11 38 38 H 1.07997 * 119.05196 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.05884 * 179.97438 * 16 15 14 40 40 H 1.07997 * 120.34960 * 359.97438 * 18 9 7 41 41 H 1.09000 * 109.50482 * 178.63304 * 19 4 2 42 42 H 1.09000 * 109.45246 * 58.65115 * 19 4 2 43 43 H 1.09002 * 109.49496 * 301.38485 * 20 19 4 44 44 H 1.08993 * 109.50047 * 181.31789 * 20 19 4 45 45 H 1.09001 * 109.58441 * 65.13899 * 21 20 19 46 46 H 1.08998 * 109.59005 * 185.56223 * 21 20 19 47 47 H 0.97009 * 119.99606 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 1.2446 5 1 1.6080 -1.7256 1.2906 6 7 1.6733 0.0261 2.4433 7 6 1.5526 -0.6062 3.6275 8 8 1.7530 -1.8030 3.7006 9 6 1.1757 0.1551 4.8366 10 6 0.9500 1.5404 4.7456 11 6 0.5975 2.2628 5.8407 12 6 0.4658 1.6258 7.0850 13 6 0.1093 2.3310 8.2484 14 6 0.0007 1.6469 9.4214 15 7 0.2219 0.3416 9.4941 16 6 0.5580 -0.3807 8.4512 17 6 0.6969 0.2289 7.1925 18 6 1.0539 -0.5012 6.0509 19 6 3.5712 -0.8445 1.1679 20 6 3.9603 -1.6607 -0.0669 21 6 3.4655 -0.9425 -1.3263 22 7 2.0227 -0.6980 -1.1953 23 6 1.1534 -1.1134 -2.1685 24 1 0.1404 -1.3828 -1.9086 25 6 1.5744 -1.1882 -3.4892 26 7 2.6833 -0.5848 -3.8615 27 14 0.5672 -2.1451 -4.7379 28 1 -0.4295 -1.2415 -5.3668 29 1 1.4672 -2.6940 -5.7837 30 1 -0.1369 -3.2604 -4.0556 31 1 -0.3632 -1.0277 0.0050 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5094 -0.8926 34 1 1.5131 0.9810 2.3849 35 1 1.0548 2.0358 3.7916 36 1 0.4236 3.3253 5.7554 37 1 -0.0748 3.3947 8.2126 38 1 -0.2731 2.1832 10.3179 39 1 0.7283 -1.4416 8.5601 40 1 1.2325 -1.5643 6.1169 41 1 3.9440 -1.3412 2.0637 42 1 4.0078 0.1517 1.0970 43 1 3.5037 -2.6488 -0.0085 44 1 5.0446 -1.7629 -0.1086 45 1 3.9887 0.0076 -1.4345 46 1 3.6525 -1.5666 -2.2001 47 1 2.9773 -0.6367 -4.7845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994168539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:08 Heat of formation + Delta-G solvation = 18.424394 kcal Electronic energy + Delta-G solvation = -28783.785410 eV Core-core repulsion = 24930.816581 eV Total energy + Delta-G solvation = -3852.968830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.95303 -40.99568 -39.34699 -37.93039 -35.96612 -34.32567 -33.98788 -33.47253 -32.41157 -30.98979 -30.51336 -27.93966 -26.90957 -25.79260 -24.94452 -23.84674 -23.14312 -22.33474 -21.86126 -21.13613 -19.34627 -18.73104 -18.27122 -17.78936 -17.16094 -16.90101 -16.57727 -16.12560 -15.98514 -15.66367 -15.57300 -15.28296 -15.11798 -14.89530 -14.78299 -14.52279 -14.50021 -14.30061 -14.20907 -13.35574 -13.25486 -13.04184 -12.86212 -12.79719 -12.71253 -12.51157 -12.39243 -12.29710 -12.02845 -11.82197 -11.77684 -11.62949 -11.23476 -11.22081 -11.01230 -10.52672 -10.49934 -10.24719 -10.00774 -9.10125 -8.63982 -7.85600 -5.31459 -0.80562 -0.32119 0.78240 1.46132 1.49097 1.52260 1.57355 2.05513 2.34245 2.53732 3.06569 3.30331 3.45378 3.49151 3.59844 3.67652 3.68707 3.87111 3.90793 4.01866 4.03568 4.07466 4.21125 4.31607 4.37408 4.51486 4.62174 4.65662 4.68928 4.75998 4.80238 4.88104 4.92068 4.92524 4.95144 5.04118 5.13419 5.19372 5.22191 5.28682 5.32420 5.45335 5.47766 5.58450 5.62609 5.71305 5.72415 5.76916 6.42455 6.53568 6.95806 7.16101 7.19802 7.87118 8.38731 9.21411 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026390 B = 0.002249 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.769002 B =12445.205595 C =12686.551515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.165 3.835 3 H 0.036 0.964 4 C 0.147 3.853 5 H 0.058 0.942 6 N -0.700 5.700 7 C 0.555 3.445 8 O -0.580 6.580 9 C -0.144 4.144 10 C -0.075 4.075 11 C -0.107 4.107 12 C -0.023 4.023 13 C -0.153 4.153 14 C 0.070 3.930 15 N -0.515 5.515 16 C 0.148 3.852 17 C -0.135 4.135 18 C -0.024 4.024 19 C -0.109 4.109 20 C -0.130 4.130 21 C 0.176 3.824 22 N -0.600 5.600 23 C -0.253 4.253 24 H 0.071 0.929 25 C -0.048 4.048 26 N -0.932 5.932 27 Si 0.960 3.040 28 H -0.283 1.283 29 H -0.295 1.295 30 H -0.275 1.275 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.412 0.588 35 H 0.154 0.846 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.181 0.819 40 H 0.143 0.857 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.006 0.994 46 H 0.053 0.947 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 9.317 23.953 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 H 0.054 0.946 4 C 0.040 3.960 5 H 0.077 0.923 6 N -0.351 5.351 7 C 0.343 3.657 8 O -0.461 6.461 9 C -0.147 4.147 10 C -0.095 4.095 11 C -0.124 4.124 12 C -0.029 4.029 13 C -0.172 4.172 14 C -0.072 4.072 15 N -0.223 5.223 16 C -0.023 4.023 17 C -0.138 4.138 18 C -0.045 4.045 19 C -0.148 4.148 20 C -0.170 4.170 21 C 0.050 3.950 22 N -0.324 5.324 23 C -0.383 4.383 24 H 0.089 0.911 25 C -0.244 4.244 26 N -0.578 5.578 27 Si 0.788 3.212 28 H -0.210 1.210 29 H -0.221 1.221 30 H -0.200 1.200 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.250 0.750 35 H 0.172 0.828 36 H 0.189 0.811 37 H 0.190 0.810 38 H 0.196 0.804 39 H 0.198 0.802 40 H 0.160 0.840 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.024 0.976 46 H 0.072 0.928 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.838 8.234 24.686 26.305 hybrid contribution -0.107 -0.043 -2.082 2.086 sum -3.945 8.191 22.604 24.364 Atomic orbital electron populations 1.21743 0.94451 1.01057 1.01370 1.20721 0.94268 0.93576 0.85621 0.94610 1.21354 0.94936 0.95614 0.84067 0.92330 1.45815 1.69322 1.12826 1.07127 1.18607 0.76465 0.86719 0.83861 1.90761 1.52525 1.16492 1.86285 1.19897 1.06614 0.95135 0.93025 1.21275 0.95842 0.91566 1.00785 1.21223 0.99287 1.01816 0.90085 1.18670 0.95905 0.92501 0.95799 1.22282 1.00375 1.02771 0.91745 1.22766 0.95648 0.89660 0.99150 1.67516 1.12569 1.09069 1.33140 1.23606 0.91425 1.00910 0.86323 1.19100 1.04362 0.94695 0.95593 1.21485 0.92208 1.00545 0.90252 1.21699 0.95265 1.00450 0.97395 1.22023 1.00334 0.98761 0.95840 1.20628 0.83198 0.96164 0.94962 1.44261 1.03080 1.65962 1.19091 1.19400 0.95533 1.36760 0.86577 0.91148 1.25760 0.99102 1.00783 0.98719 1.70162 1.25747 1.45310 1.16580 0.85398 0.77967 0.78849 0.78967 1.21001 1.22126 1.19984 0.94202 0.90586 0.93123 0.75013 0.82837 0.81115 0.80956 0.80444 0.80174 0.83971 0.92673 0.91380 0.93774 0.90925 0.97616 0.92848 0.94228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 7.84 71.98 0.56 -3.92 16 2 C 0.16 6.28 3.03 44.98 0.14 6.42 16 3 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 4 C 0.15 5.04 2.00 45.09 0.09 5.13 16 5 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 6 N -0.70 -18.33 4.54 -445.00 -2.02 -20.35 16 7 C 0.55 15.70 7.73 86.76 0.67 16.37 16 8 O -0.58 -21.28 15.96 -3.90 -0.06 -21.34 16 9 C -0.14 -3.09 5.87 -20.09 -0.12 -3.20 16 10 C -0.08 -1.12 9.44 22.30 0.21 -0.91 16 11 C -0.11 -1.29 9.77 22.24 0.22 -1.07 16 12 C -0.02 -0.36 5.75 -21.24 -0.12 -0.48 16 13 C -0.15 -1.73 9.87 22.39 0.22 -1.51 16 14 C 0.07 0.94 11.07 84.11 0.93 1.88 16 15 N -0.51 -9.43 10.30 -195.42 -2.01 -11.44 16 16 C 0.15 2.57 11.05 85.34 0.94 3.51 16 17 C -0.14 -2.49 5.74 -21.32 -0.12 -2.61 16 18 C -0.02 -0.50 9.37 22.81 0.21 -0.28 16 19 C -0.11 -3.73 5.47 30.64 0.17 -3.56 16 20 C -0.13 -5.02 6.08 30.67 0.19 -4.84 16 21 C 0.18 8.33 5.28 86.36 0.46 8.79 16 22 N -0.60 -28.91 2.99 -675.23 -2.02 -30.92 16 23 C -0.25 -13.38 8.57 84.04 0.72 -12.66 16 24 H 0.07 3.65 6.24 -2.91 -0.02 3.63 16 25 C -0.05 -2.64 4.94 84.86 0.42 -2.22 16 26 N -0.93 -53.92 11.23 21.65 0.24 -53.67 16 27 Si 0.96 44.49 29.58 68.60 2.03 46.52 16 28 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 30 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 31 H 0.04 1.49 7.43 -2.39 -0.02 1.48 16 32 H 0.08 2.03 7.81 -2.39 -0.02 2.01 16 33 H 0.05 1.90 7.63 -2.39 -0.02 1.88 16 34 H 0.41 7.99 6.58 -92.71 -0.61 7.38 16 35 H 0.15 1.52 6.34 -2.91 -0.02 1.51 16 36 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 37 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 38 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.14 3.01 7.61 -2.91 -0.02 2.99 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.05 2.88 6.15 -2.39 -0.01 2.87 16 47 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 Total: -1.00 -71.31 377.54 2.33 -68.98 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.38 Total: 17.39 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 5.78 Total: 4.84 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -5.81 Total: -116.39 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.06 Total: -21.34 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -71.31 2.33 -68.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994168539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.400 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds