Wall clock time and date at job start Tue Mar 31 2020 22:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 H 1.09005 * 109.35800 * 305.61133 * 4 2 1 6 6 N 1.46495 * 109.56980 * 65.66865 * 4 2 1 7 7 C 1.34769 * 120.00387 * 204.96822 * 6 4 2 8 8 O 1.21506 * 120.00057 * 359.97438 * 7 6 4 9 9 C 1.48278 * 120.00318 * 179.97438 * 7 6 4 10 10 C 1.40277 * 119.23996 * 180.02562 * 9 7 6 11 11 C 1.36503 * 119.81279 * 179.97438 * 10 9 7 12 12 C 1.40755 * 118.24527 * 0.02562 * 11 10 9 13 13 C 1.40427 * 121.27538 * 180.02562 * 12 11 10 14 14 C 1.36125 * 119.64820 * 179.97438 * 13 12 11 15 15 C 1.39438 * 120.91663 * 0.02562 * 14 13 12 16 16 C 1.35993 * 121.08576 * 0.02562 * 15 14 13 17 17 C 1.40824 * 119.73460 * 359.94999 * 16 15 14 18 18 N 1.31883 * 119.23717 * 359.73187 * 9 7 6 19 19 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 20 20 C 1.53043 * 109.54140 * 61.23858 * 19 4 2 21 21 C 1.53193 * 109.30963 * 298.63474 * 20 19 4 22 22 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 23 23 C 1.36942 * 120.62997 * 353.41990 * 22 2 1 24 24 H 1.07996 * 119.99665 * 29.58632 * 23 22 2 25 25 C 1.38808 * 119.99877 * 209.58916 * 23 22 2 26 26 N 1.31618 * 120.00552 * 15.52077 * 25 23 22 27 27 Si 1.86804 * 119.99669 * 195.52646 * 25 23 22 28 28 H 1.48498 * 109.47155 * 180.02562 * 27 25 23 29 29 H 1.48506 * 109.46909 * 300.00011 * 27 25 23 30 30 H 1.48501 * 109.47361 * 59.99417 * 27 25 23 31 31 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 32 32 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 33 33 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 34 34 H 0.97001 * 119.99820 * 24.96323 * 6 4 2 35 35 H 1.08000 * 120.09875 * 359.97438 * 10 9 7 36 36 H 1.08002 * 120.87660 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.17237 * 359.95841 * 13 12 11 38 38 H 1.08004 * 119.53998 * 180.02562 * 14 13 12 39 39 H 1.08004 * 119.45751 * 179.97438 * 15 14 13 40 40 H 1.07992 * 120.13441 * 179.97438 * 16 15 14 41 41 H 1.09001 * 109.46284 * 301.21051 * 19 4 2 42 42 H 1.09005 * 109.44845 * 181.25310 * 19 4 2 43 43 H 1.08996 * 109.49796 * 178.68040 * 20 19 4 44 44 H 1.09000 * 109.52406 * 58.60257 * 20 19 4 45 45 H 1.08998 * 109.58588 * 294.84653 * 21 20 19 46 46 H 1.08997 * 109.70252 * 174.49039 * 21 20 19 47 47 H 0.96996 * 120.00275 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.5964 -1.7169 -1.2937 6 7 1.6680 0.0383 -2.4410 7 6 1.5443 -0.5889 -3.6274 8 8 1.7419 -1.7852 -3.7057 9 6 1.1671 0.1809 -4.8372 10 6 1.0423 -0.4882 -6.0638 11 6 0.6950 0.2090 -7.1849 12 6 0.4725 1.5937 -7.0659 13 6 0.1121 2.3723 -8.1776 14 6 -0.0956 3.7089 -8.0248 15 6 0.0450 4.3178 -6.7783 16 6 0.3937 3.5962 -5.6796 17 6 0.6169 2.2106 -5.7960 18 7 0.9509 1.4778 -4.7341 19 6 3.5638 -0.8460 -1.1726 20 6 3.9524 -1.6685 0.0581 21 6 3.4644 -0.9518 1.3211 22 7 2.0225 -0.6995 1.1944 23 6 1.1536 -1.1135 2.1685 24 1 0.1387 -1.3771 1.9102 25 6 1.5774 -1.1943 3.4879 26 7 2.6899 -0.5972 3.8596 27 14 0.5687 -2.1506 4.7359 28 1 1.2311 -2.0838 6.0633 29 1 -0.7904 -1.5597 4.8311 30 1 0.4631 -3.5679 4.3055 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3634 -1.0276 -0.0064 34 1 1.5106 0.9934 -2.3785 35 1 1.2204 -1.5518 -6.1212 36 1 0.5945 -0.2887 -8.1381 37 1 0.0006 1.9131 -9.1488 38 1 -0.3731 4.3060 -8.8809 39 1 -0.1251 5.3802 -6.6839 40 1 0.4987 4.0836 -4.7217 41 1 4.0058 0.1477 -1.0996 42 1 3.9312 -1.3415 -2.0713 43 1 5.0363 -1.7760 0.0965 44 1 3.4910 -2.6543 -0.0021 45 1 3.9928 -0.0049 1.4310 46 1 3.6506 -1.5776 2.1938 47 1 2.9858 -0.6533 4.7816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994275268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:32 Heat of formation + Delta-G solvation = 39.530457 kcal Electronic energy + Delta-G solvation = -28938.673554 eV Core-core repulsion = 25086.619952 eV Total energy + Delta-G solvation = -3852.053602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.24407 -39.63754 -37.83246 -36.95271 -34.43892 -33.79667 -32.54103 -31.68928 -30.97846 -30.37051 -29.09958 -26.37211 -25.32644 -24.87660 -23.95870 -22.43763 -22.23192 -20.67124 -20.50945 -19.51611 -18.36989 -17.91831 -17.45448 -16.37180 -15.67732 -15.55981 -15.25740 -15.03348 -14.75723 -14.67606 -14.22862 -14.12930 -13.76216 -13.66729 -13.43597 -13.39004 -13.28616 -12.77872 -12.52290 -12.02401 -11.99014 -11.84380 -11.67691 -11.50670 -11.06896 -10.92352 -10.89273 -10.73495 -10.55475 -10.37187 -10.25132 -10.06205 -10.02475 -9.81397 -9.58976 -9.34455 -9.12115 -8.68473 -8.59558 -8.42598 -6.64337 -5.77400 -3.21760 -0.09015 0.37652 1.62287 2.25049 3.16277 3.19608 3.40086 3.45714 3.47625 3.85066 3.87859 4.20732 4.42371 4.46597 4.50986 4.63789 4.79440 4.83249 5.01050 5.13701 5.31962 5.40653 5.43490 5.53520 5.58837 5.62044 5.68347 5.73018 5.82443 5.97807 6.00076 6.04593 6.11933 6.14561 6.25242 6.36395 6.45276 6.46554 6.55983 6.64576 6.73355 6.78118 6.87325 7.02402 7.09958 7.38909 7.41988 7.68842 7.80035 7.83936 8.35002 8.47664 9.22452 9.85032 10.41867 11.31516 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.002460 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.183741 B =11380.767122 C =11857.103210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.128 3.872 5 H 0.088 0.912 6 N -0.693 5.693 7 C 0.564 3.436 8 O -0.533 6.533 9 C 0.124 3.876 10 C -0.124 4.124 11 C -0.064 4.064 12 C -0.090 4.090 13 C -0.101 4.101 14 C -0.110 4.110 15 C -0.106 4.106 16 C -0.083 4.083 17 C 0.124 3.876 18 N -0.442 5.442 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.169 3.831 22 N -0.581 5.581 23 C -0.252 4.252 24 H 0.070 0.930 25 C 0.005 3.995 26 N -0.902 5.902 27 Si 0.902 3.098 28 H -0.291 1.291 29 H -0.283 1.283 30 H -0.283 1.283 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.407 0.593 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.019 0.981 46 H 0.087 0.913 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 7.932 -24.458 25.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.023 3.977 5 H 0.106 0.894 6 N -0.343 5.343 7 C 0.347 3.653 8 O -0.409 6.409 9 C -0.030 4.030 10 C -0.145 4.145 11 C -0.090 4.090 12 C -0.092 4.092 13 C -0.120 4.120 14 C -0.128 4.128 15 C -0.126 4.126 16 C -0.102 4.102 17 C 0.000 4.000 18 N -0.154 5.154 19 C -0.156 4.156 20 C -0.180 4.180 21 C 0.044 3.956 22 N -0.305 5.305 23 C -0.382 4.382 24 H 0.087 0.913 25 C -0.194 4.194 26 N -0.546 5.546 27 Si 0.732 3.268 28 H -0.217 1.217 29 H -0.209 1.209 30 H -0.210 1.210 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.037 0.963 46 H 0.106 0.894 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.321 7.567 -23.463 24.876 hybrid contribution -0.561 -0.365 -0.166 0.690 sum -3.883 7.202 -23.629 25.005 Atomic orbital electron populations 1.21825 0.95627 1.01626 1.00398 1.20462 0.93306 0.93676 0.86512 0.95385 1.21803 0.95321 0.96838 0.83765 0.89416 1.46018 1.67586 1.13002 1.07657 1.17879 0.78112 0.86570 0.82758 1.90784 1.50995 1.13944 1.85213 1.21542 0.96987 0.89950 0.94479 1.21789 0.98412 1.02534 0.91762 1.21463 0.95824 0.92495 0.99245 1.18990 1.00800 0.94627 0.94807 1.20997 0.99277 0.94123 0.97623 1.20999 0.99069 0.94942 0.97765 1.20944 0.98790 1.00529 0.92343 1.20927 0.98127 0.91165 0.99960 1.18873 0.98576 0.94328 0.88191 1.67864 1.09776 1.06155 1.31598 1.21768 0.95188 1.00186 0.98421 1.22181 0.99257 0.99667 0.96848 1.20832 0.83161 0.97219 0.94392 1.44012 1.03183 1.65068 1.18193 1.19116 0.95088 1.37915 0.86052 0.91271 1.25078 0.97887 0.99498 0.96935 1.70015 1.23994 1.43781 1.16832 0.86383 0.79581 0.80295 0.80570 1.21676 1.20895 1.20982 0.91686 0.94210 0.92715 0.75754 0.83092 0.83711 0.85084 0.85399 0.85063 0.84240 0.92639 0.93133 0.92960 0.92470 0.96251 0.89445 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.83 37.16 0.29 -2.35 16 2 C 0.17 3.48 3.02 -67.83 -0.20 3.27 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 4 C 0.13 2.40 1.97 -68.04 -0.13 2.27 16 5 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 6 N -0.69 -11.19 4.56 -54.71 -0.25 -11.44 16 7 C 0.56 9.20 7.78 -12.13 -0.09 9.10 16 8 O -0.53 -10.09 15.95 5.36 0.09 -10.00 16 9 C 0.12 1.72 6.75 -82.95 -0.56 1.16 16 10 C -0.12 -1.42 9.54 -39.44 -0.38 -1.80 16 11 C -0.06 -0.58 9.88 -39.26 -0.39 -0.97 16 12 C -0.09 -0.88 5.75 -106.71 -0.61 -1.49 16 13 C -0.10 -0.72 9.77 -39.52 -0.39 -1.11 16 14 C -0.11 -0.69 9.95 -39.89 -0.40 -1.09 16 15 C -0.11 -0.74 9.94 -39.94 -0.40 -1.13 16 16 C -0.08 -0.77 9.99 -39.41 -0.39 -1.16 16 17 C 0.12 1.42 6.61 -84.85 -0.56 0.86 16 18 N -0.44 -5.85 9.47 -7.54 -0.07 -5.93 16 19 C -0.12 -2.16 5.46 -26.69 -0.15 -2.31 16 20 C -0.14 -2.79 6.08 -26.61 -0.16 -2.95 16 21 C 0.17 4.04 5.29 -3.71 -0.02 4.02 16 22 N -0.58 -14.31 2.99 -165.03 -0.49 -14.80 16 23 C -0.25 -6.75 8.57 -15.06 -0.13 -6.88 16 24 H 0.07 1.82 6.23 -52.49 -0.33 1.49 16 25 C 0.00 0.13 4.94 -17.43 -0.09 0.05 16 26 N -0.90 -25.90 11.23 55.49 0.62 -25.28 16 27 Si 0.90 21.65 29.58 -169.99 -5.03 16.62 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 30 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 31 H 0.06 1.32 7.62 -51.93 -0.40 0.93 16 32 H 0.04 0.65 7.79 -51.93 -0.40 0.25 16 33 H 0.05 1.09 7.44 -51.93 -0.39 0.71 16 34 H 0.41 6.00 7.91 -40.82 -0.32 5.68 16 35 H 0.15 1.62 7.60 -52.49 -0.40 1.22 16 36 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 39 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 40 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 2.32 6.14 -51.93 -0.32 2.00 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -31.49 379.98 -10.90 -42.39 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.73 Total: 5.23 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -4.76 Total: -2.52 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.19 Total: -57.44 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.49 -10.90 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994275268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.918 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds