Wall clock time and date at job start Tue Mar 31 2020 22:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 H 1.09005 * 109.35800 * 305.61133 * 4 2 1 6 6 N 1.46495 * 109.56980 * 65.66865 * 4 2 1 7 7 C 1.34769 * 120.00387 * 204.96822 * 6 4 2 8 8 O 1.21506 * 120.00057 * 359.97438 * 7 6 4 9 9 C 1.48278 * 120.00318 * 179.97438 * 7 6 4 10 10 C 1.40277 * 119.23996 * 180.02562 * 9 7 6 11 11 C 1.36503 * 119.81279 * 179.97438 * 10 9 7 12 12 C 1.40755 * 118.24527 * 0.02562 * 11 10 9 13 13 C 1.40427 * 121.27538 * 180.02562 * 12 11 10 14 14 C 1.36125 * 119.64820 * 179.97438 * 13 12 11 15 15 C 1.39438 * 120.91663 * 0.02562 * 14 13 12 16 16 C 1.35993 * 121.08576 * 0.02562 * 15 14 13 17 17 C 1.40824 * 119.73460 * 359.94999 * 16 15 14 18 18 N 1.31883 * 119.23717 * 359.73187 * 9 7 6 19 19 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 20 20 C 1.53043 * 109.54140 * 61.23858 * 19 4 2 21 21 C 1.53193 * 109.30963 * 298.63474 * 20 19 4 22 22 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 23 23 C 1.36942 * 120.62997 * 353.41990 * 22 2 1 24 24 H 1.07996 * 119.99665 * 29.58632 * 23 22 2 25 25 C 1.38808 * 119.99877 * 209.58916 * 23 22 2 26 26 N 1.31618 * 120.00552 * 15.52077 * 25 23 22 27 27 Si 1.86804 * 119.99669 * 195.52646 * 25 23 22 28 28 H 1.48498 * 109.47155 * 180.02562 * 27 25 23 29 29 H 1.48506 * 109.46909 * 300.00011 * 27 25 23 30 30 H 1.48501 * 109.47361 * 59.99417 * 27 25 23 31 31 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 32 32 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 33 33 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 34 34 H 0.97001 * 119.99820 * 24.96323 * 6 4 2 35 35 H 1.08000 * 120.09875 * 359.97438 * 10 9 7 36 36 H 1.08002 * 120.87660 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.17237 * 359.95841 * 13 12 11 38 38 H 1.08004 * 119.53998 * 180.02562 * 14 13 12 39 39 H 1.08004 * 119.45751 * 179.97438 * 15 14 13 40 40 H 1.07992 * 120.13441 * 179.97438 * 16 15 14 41 41 H 1.09001 * 109.46284 * 301.21051 * 19 4 2 42 42 H 1.09005 * 109.44845 * 181.25310 * 19 4 2 43 43 H 1.08996 * 109.49796 * 178.68040 * 20 19 4 44 44 H 1.09000 * 109.52406 * 58.60257 * 20 19 4 45 45 H 1.08998 * 109.58588 * 294.84653 * 21 20 19 46 46 H 1.08997 * 109.70252 * 174.49039 * 21 20 19 47 47 H 0.96996 * 120.00275 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.5964 -1.7169 -1.2937 6 7 1.6680 0.0383 -2.4410 7 6 1.5443 -0.5889 -3.6274 8 8 1.7419 -1.7852 -3.7057 9 6 1.1671 0.1809 -4.8372 10 6 1.0423 -0.4882 -6.0638 11 6 0.6950 0.2090 -7.1849 12 6 0.4725 1.5937 -7.0659 13 6 0.1121 2.3723 -8.1776 14 6 -0.0956 3.7089 -8.0248 15 6 0.0450 4.3178 -6.7783 16 6 0.3937 3.5962 -5.6796 17 6 0.6169 2.2106 -5.7960 18 7 0.9509 1.4778 -4.7341 19 6 3.5638 -0.8460 -1.1726 20 6 3.9524 -1.6685 0.0581 21 6 3.4644 -0.9518 1.3211 22 7 2.0225 -0.6995 1.1944 23 6 1.1536 -1.1135 2.1685 24 1 0.1387 -1.3771 1.9102 25 6 1.5774 -1.1943 3.4879 26 7 2.6899 -0.5972 3.8596 27 14 0.5687 -2.1506 4.7359 28 1 1.2311 -2.0838 6.0633 29 1 -0.7904 -1.5597 4.8311 30 1 0.4631 -3.5679 4.3055 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3634 -1.0276 -0.0064 34 1 1.5106 0.9934 -2.3785 35 1 1.2204 -1.5518 -6.1212 36 1 0.5945 -0.2887 -8.1381 37 1 0.0006 1.9131 -9.1488 38 1 -0.3731 4.3060 -8.8809 39 1 -0.1251 5.3802 -6.6839 40 1 0.4987 4.0836 -4.7217 41 1 4.0058 0.1477 -1.0996 42 1 3.9312 -1.3415 -2.0713 43 1 5.0363 -1.7760 0.0965 44 1 3.4910 -2.6543 -0.0021 45 1 3.9928 -0.0049 1.4310 46 1 3.6506 -1.5776 2.1938 47 1 2.9858 -0.6533 4.7816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994275268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:31 Heat of formation + Delta-G solvation = 21.086417 kcal Electronic energy + Delta-G solvation = -28939.473348 eV Core-core repulsion = 25086.619952 eV Total energy + Delta-G solvation = -3852.853396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.07111 -40.91211 -39.32357 -37.81440 -35.99924 -34.67404 -34.20684 -33.43142 -31.91741 -31.14446 -30.62492 -27.98437 -26.95166 -26.17301 -24.74030 -23.77181 -23.07274 -22.37027 -21.80371 -21.16456 -19.31825 -18.92802 -18.23981 -18.15709 -17.27436 -16.67496 -16.47282 -16.36524 -15.72525 -15.59051 -15.51953 -15.40348 -15.23763 -14.98538 -14.81729 -14.51484 -14.37255 -14.18767 -14.02591 -13.37054 -13.27184 -12.81391 -12.75061 -12.68169 -12.61405 -12.55651 -12.45131 -12.39895 -12.03639 -11.87478 -11.79750 -11.68216 -11.63690 -11.37493 -11.16235 -10.61710 -10.52435 -10.12581 -9.80197 -9.26488 -8.65805 -7.85848 -5.32378 -0.84557 -0.33947 0.93090 1.38777 1.47107 1.49742 1.55845 1.95952 2.22256 2.52897 2.93769 3.09131 3.29599 3.55342 3.60437 3.69958 3.83659 3.85187 3.91136 4.00790 4.16822 4.19072 4.25962 4.33288 4.39025 4.48660 4.52502 4.59188 4.71789 4.78593 4.86646 4.88796 4.92399 5.01349 5.04397 5.09856 5.11600 5.17854 5.24849 5.38806 5.39635 5.44354 5.45243 5.50682 5.55872 5.69993 5.75234 5.87281 6.35282 6.41780 6.68700 7.08303 7.16460 7.85255 8.37967 9.21415 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.002460 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.183741 B =11380.767122 C =11857.103210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.166 3.834 3 H 0.029 0.971 4 C 0.144 3.856 5 H 0.064 0.936 6 N -0.688 5.688 7 C 0.565 3.435 8 O -0.565 6.565 9 C 0.099 3.901 10 C -0.143 4.143 11 C -0.047 4.047 12 C -0.101 4.101 13 C -0.101 4.101 14 C -0.104 4.104 15 C -0.093 4.093 16 C -0.110 4.110 17 C 0.097 3.903 18 N -0.459 5.459 19 C -0.110 4.110 20 C -0.128 4.128 21 C 0.176 3.824 22 N -0.599 5.599 23 C -0.256 4.256 24 H 0.071 0.929 25 C -0.047 4.047 26 N -0.933 5.933 27 Si 0.963 3.037 28 H -0.294 1.294 29 H -0.275 1.275 30 H -0.281 1.281 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.414 0.586 35 H 0.151 0.849 36 H 0.185 0.815 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.138 0.862 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.003 0.997 46 H 0.056 0.944 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 9.342 -28.131 30.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.059 3.941 3 H 0.047 0.953 4 C 0.038 3.962 5 H 0.083 0.917 6 N -0.338 5.338 7 C 0.350 3.650 8 O -0.443 6.443 9 C -0.053 4.053 10 C -0.164 4.164 11 C -0.072 4.072 12 C -0.103 4.103 13 C -0.120 4.120 14 C -0.122 4.122 15 C -0.113 4.113 16 C -0.128 4.128 17 C -0.027 4.027 18 N -0.171 5.171 19 C -0.148 4.148 20 C -0.168 4.168 21 C 0.050 3.950 22 N -0.323 5.323 23 C -0.386 4.386 24 H 0.089 0.911 25 C -0.243 4.243 26 N -0.579 5.579 27 Si 0.791 3.209 28 H -0.220 1.220 29 H -0.201 1.201 30 H -0.207 1.207 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.251 0.749 35 H 0.168 0.832 36 H 0.202 0.798 37 H 0.182 0.818 38 H 0.181 0.819 39 H 0.177 0.823 40 H 0.156 0.844 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.021 0.979 46 H 0.075 0.925 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.551 8.994 -27.165 28.975 hybrid contribution -0.245 -0.610 0.782 1.021 sum -4.796 8.384 -26.383 28.096 Atomic orbital electron populations 1.21716 0.94547 1.01134 1.01042 1.20577 0.94240 0.93401 0.85864 0.95338 1.21344 0.95283 0.95583 0.83973 0.91744 1.45836 1.67842 1.13112 1.07043 1.18288 0.76995 0.86364 0.83308 1.90750 1.52394 1.15383 1.85817 1.21167 0.99743 0.90424 0.93988 1.21827 1.00033 1.02698 0.91831 1.21876 0.93291 0.92243 0.99823 1.19316 1.00713 0.95275 0.95037 1.21396 0.98146 0.94419 0.97991 1.21479 0.97182 0.95041 0.98452 1.21358 0.96260 1.01789 0.91879 1.21083 0.99975 0.90641 1.01124 1.19293 0.99466 0.95203 0.88712 1.67736 1.10354 1.05990 1.33056 1.21693 0.94976 1.00354 0.97800 1.22015 1.00495 0.98751 0.95502 1.20646 0.83111 0.96147 0.95083 1.44244 1.03275 1.65761 1.18970 1.19403 0.95439 1.37093 0.86669 0.91097 1.25784 0.99119 1.00718 0.98667 1.70161 1.25588 1.45358 1.16774 0.85417 0.78404 0.78973 0.78105 1.22036 1.20077 1.20735 0.93028 0.91445 0.93737 0.74878 0.83155 0.79816 0.81836 0.81894 0.82323 0.84387 0.91849 0.92404 0.90672 0.93368 0.97862 0.92526 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 7.83 71.98 0.56 -4.37 16 2 C 0.17 6.99 3.02 44.83 0.14 7.12 16 3 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.14 5.50 1.97 44.93 0.09 5.59 16 5 H 0.06 2.79 7.58 -2.38 -0.02 2.78 16 6 N -0.69 -22.55 4.56 -445.32 -2.03 -24.58 16 7 C 0.57 18.88 7.78 86.92 0.68 19.55 16 8 O -0.57 -21.99 15.95 -3.74 -0.06 -22.05 16 9 C 0.10 2.78 6.75 42.30 0.29 3.07 16 10 C -0.14 -3.20 9.54 22.36 0.21 -2.99 16 11 C -0.05 -0.73 9.88 22.48 0.22 -0.51 16 12 C -0.10 -1.72 5.75 -21.22 -0.12 -1.85 16 13 C -0.10 -1.00 9.77 22.31 0.22 -0.78 16 14 C -0.10 -0.82 9.95 22.07 0.22 -0.60 16 15 C -0.09 -0.97 9.94 22.04 0.22 -0.75 16 16 C -0.11 -1.87 9.99 22.38 0.22 -1.65 16 17 C 0.10 2.13 6.61 40.47 0.27 2.40 16 18 N -0.46 -12.21 9.47 -177.76 -1.68 -13.89 16 19 C -0.11 -4.06 5.46 30.62 0.17 -3.89 16 20 C -0.13 -5.16 6.08 30.67 0.19 -4.98 16 21 C 0.18 8.65 5.29 86.36 0.46 9.11 16 22 N -0.60 -30.30 2.99 -676.05 -2.02 -32.32 16 23 C -0.26 -14.03 8.57 84.03 0.72 -13.31 16 24 H 0.07 3.79 6.23 -2.91 -0.02 3.77 16 25 C -0.05 -2.66 4.94 84.86 0.42 -2.24 16 26 N -0.93 -55.26 11.23 21.65 0.24 -55.01 16 27 Si 0.96 45.40 29.58 68.60 2.03 47.43 16 28 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 29 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 30 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 31 H 0.05 2.12 7.62 -2.39 -0.02 2.10 16 32 H 0.07 2.21 7.79 -2.39 -0.02 2.19 16 33 H 0.04 1.80 7.44 -2.39 -0.02 1.78 16 34 H 0.41 12.36 7.91 -92.71 -0.73 11.62 16 35 H 0.15 3.24 7.60 -2.91 -0.02 3.22 16 36 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 38 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 39 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 40 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.06 3.13 6.14 -2.39 -0.01 3.12 16 47 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -71.37 379.98 1.89 -69.48 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.26 Total: 22.01 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.16 Total: 8.93 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -5.49 Total: -125.81 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.06 Total: -22.05 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.37 1.89 -69.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994275268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.562 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds