Wall clock time and date at job start Tue Mar 31 2020 22:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.58368 * 2 1 4 4 C 1.53187 * 109.58635 * 239.71742 * 2 1 3 5 5 H 1.09003 * 109.49831 * 65.45152 * 4 2 1 6 6 N 1.46500 * 109.49615 * 305.38336 * 4 2 1 7 7 C 1.34783 * 119.99762 * 155.06824 * 6 4 2 8 8 O 1.21504 * 120.00058 * 359.97438 * 7 6 4 9 9 C 1.48270 * 119.99960 * 180.02562 * 7 6 4 10 10 C 1.40277 * 119.24051 * 179.97438 * 9 7 6 11 11 C 1.36507 * 119.81368 * 179.97438 * 10 9 7 12 12 C 1.40751 * 118.24762 * 0.02562 * 11 10 9 13 13 C 1.40419 * 121.27917 * 180.02562 * 12 11 10 14 14 C 1.36136 * 119.65292 * 179.75680 * 13 12 11 15 15 C 1.39437 * 120.90904 * 0.47593 * 14 13 12 16 16 C 1.35992 * 121.08670 * 359.49907 * 15 14 13 17 17 C 1.40826 * 119.73832 * 0.25171 * 16 15 14 18 18 N 1.31883 * 119.24152 * 359.97153 * 9 7 6 19 19 C 1.53048 * 109.34059 * 185.41753 * 4 2 1 20 20 C 1.53107 * 109.49846 * 61.34700 * 19 4 2 21 21 C 1.53191 * 109.33066 * 298.65658 * 20 19 4 22 22 N 1.46923 * 108.77685 * 54.64107 * 21 20 19 23 23 C 1.36935 * 120.63373 * 126.41034 * 22 21 20 24 24 H 1.07996 * 119.99992 * 208.63376 * 23 22 21 25 25 C 1.38822 * 119.99818 * 28.63309 * 23 22 21 26 26 N 1.31613 * 120.00046 * 14.71643 * 25 23 22 27 27 Si 1.86796 * 119.99508 * 194.71599 * 25 23 22 28 28 H 1.48495 * 109.47161 * 90.00334 * 27 25 23 29 29 H 1.48503 * 109.46976 * 209.99795 * 27 25 23 30 30 H 1.48500 * 109.47486 * 329.99964 * 27 25 23 31 31 H 1.09000 * 109.46701 * 180.28787 * 1 2 3 32 32 H 1.09002 * 109.46987 * 300.28321 * 1 2 3 33 33 H 1.08996 * 109.47374 * 60.28472 * 1 2 3 34 34 H 0.96996 * 120.00499 * 335.06607 * 6 4 2 35 35 H 1.07996 * 120.09324 * 0.02562 * 10 9 7 36 36 H 1.08004 * 120.87293 * 180.02562 * 11 10 9 37 37 H 1.08006 * 120.17364 * 0.02562 * 13 12 11 38 38 H 1.07997 * 119.54452 * 180.25285 * 14 13 12 39 39 H 1.07995 * 119.45451 * 179.77171 * 15 14 13 40 40 H 1.08001 * 120.12982 * 180.27567 * 16 15 14 41 41 H 1.08994 * 109.46317 * 181.39768 * 19 4 2 42 42 H 1.09000 * 109.45645 * 301.36351 * 19 4 2 43 43 H 1.09010 * 109.48334 * 178.70725 * 20 19 4 44 44 H 1.08999 * 109.51998 * 58.63550 * 20 19 4 45 45 H 1.08999 * 109.58839 * 294.85055 * 21 20 19 46 46 H 1.09005 * 109.70382 * 174.50003 * 21 20 19 47 47 H 0.96992 * 120.00266 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.7633 -0.1657 -2.1372 6 7 1.4541 -2.0675 -1.3078 7 6 1.3322 -2.6963 -2.4937 8 8 1.7108 -2.1518 -3.5118 9 6 0.7350 -4.0520 -2.5561 10 6 0.6154 -4.6915 -3.7989 11 6 0.0679 -5.9400 -3.8698 12 6 -0.3629 -6.5473 -2.6753 13 6 -0.9346 -7.8298 -2.6745 14 6 -1.3352 -8.3879 -1.4992 15 6 -1.1950 -7.6993 -0.2948 16 6 -0.6455 -6.4559 -0.2567 17 6 -0.2139 -5.8461 -1.4504 18 7 0.3287 -4.6289 -1.4419 19 6 3.5679 -0.8433 -1.1737 20 6 3.9604 -1.6608 0.0599 21 6 3.4685 -0.9435 1.3210 22 7 2.0254 -0.6990 1.1936 23 6 1.1586 -1.1143 2.1689 24 1 0.1394 -1.3649 1.9145 25 6 1.5900 -1.2133 3.4847 26 7 2.7190 -0.6448 3.8516 27 14 0.5681 -2.1531 4.7344 28 1 0.9912 -3.5764 4.7498 29 1 0.7684 -1.5627 6.0822 30 1 -0.8676 -2.0675 4.3648 31 1 -0.3633 -1.0277 0.0052 32 1 -0.3633 0.5182 0.8875 33 1 -0.3634 0.5094 -0.8925 34 1 1.1515 -2.5021 -0.4952 35 1 0.9562 -4.1979 -4.6969 36 1 -0.0321 -6.4483 -4.8175 37 1 -1.0518 -8.3725 -3.6009 38 1 -1.7709 -9.3761 -1.5001 39 1 -1.5242 -8.1629 0.6234 40 1 -0.5403 -5.9384 0.6854 41 1 3.9377 -1.3388 -2.0713 42 1 4.0046 0.1529 -1.1030 43 1 5.0450 -1.7624 0.0988 44 1 3.5042 -2.6490 0.0021 45 1 3.9920 0.0065 1.4287 46 1 3.6579 -1.5662 2.1955 47 1 3.0202 -0.7136 4.7710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994275282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:36 Heat of formation + Delta-G solvation = 41.554927 kcal Electronic energy + Delta-G solvation = -29920.635803 eV Core-core repulsion = 26068.669988 eV Total energy + Delta-G solvation = -3851.965815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.07620 -39.59019 -37.78325 -36.78754 -34.08607 -33.60736 -32.36264 -31.70446 -30.80716 -30.19810 -29.22109 -26.36707 -25.22547 -24.90388 -23.80527 -22.25944 -22.11198 -20.93399 -20.57480 -18.70877 -18.29205 -17.84276 -17.28980 -16.38903 -15.50887 -15.33646 -15.14456 -14.97065 -14.60635 -14.52149 -14.24532 -14.02807 -13.80868 -13.47258 -13.30039 -13.25535 -13.01782 -12.91651 -12.54251 -11.84993 -11.83062 -11.79227 -11.68056 -11.24551 -11.21445 -10.94218 -10.75880 -10.69204 -10.59816 -10.48114 -10.12610 -10.05486 -9.97396 -9.62107 -9.45716 -9.28283 -8.96142 -8.54115 -8.46444 -8.38960 -6.65752 -5.77499 -3.22329 0.08819 0.53965 1.79839 2.41297 3.32606 3.37153 3.42207 3.44336 3.44997 4.05487 4.05743 4.37177 4.48109 4.59737 4.62761 4.79301 4.95680 5.02433 5.19228 5.29089 5.33235 5.36178 5.58697 5.60067 5.62952 5.75772 5.77170 5.83541 5.89423 5.99339 6.14449 6.15620 6.21690 6.25189 6.31584 6.34494 6.44035 6.54900 6.62872 6.70579 6.71414 6.80983 6.96351 6.99605 7.10485 7.42667 7.60339 7.71558 7.82046 8.06973 8.45256 8.56811 9.21614 9.84347 10.40733 11.30345 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010151 B = 0.004320 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.591499 B = 6479.198265 C = 8482.380415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.160 3.840 3 H 0.041 0.959 4 C 0.130 3.870 5 H 0.078 0.922 6 N -0.674 5.674 7 C 0.560 3.440 8 O -0.548 6.548 9 C 0.122 3.878 10 C -0.125 4.125 11 C -0.068 4.068 12 C -0.090 4.090 13 C -0.105 4.105 14 C -0.108 4.108 15 C -0.109 4.109 16 C -0.079 4.079 17 C 0.125 3.875 18 N -0.434 5.434 19 C -0.121 4.121 20 C -0.141 4.141 21 C 0.170 3.830 22 N -0.586 5.586 23 C -0.250 4.250 24 H 0.071 0.929 25 C 0.005 3.995 26 N -0.902 5.902 27 Si 0.900 3.100 28 H -0.288 1.288 29 H -0.293 1.293 30 H -0.279 1.279 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.420 0.580 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.142 0.858 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.090 0.910 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.911 -12.711 -12.926 19.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.053 3.947 3 H 0.059 0.941 4 C 0.024 3.976 5 H 0.096 0.904 6 N -0.325 5.325 7 C 0.343 3.657 8 O -0.426 6.426 9 C -0.032 4.032 10 C -0.145 4.145 11 C -0.094 4.094 12 C -0.092 4.092 13 C -0.124 4.124 14 C -0.126 4.126 15 C -0.129 4.129 16 C -0.098 4.098 17 C 0.001 3.999 18 N -0.145 5.145 19 C -0.159 4.159 20 C -0.181 4.181 21 C 0.045 3.955 22 N -0.309 5.309 23 C -0.380 4.380 24 H 0.089 0.911 25 C -0.194 4.194 26 N -0.546 5.546 27 Si 0.730 3.270 28 H -0.215 1.215 29 H -0.219 1.219 30 H -0.205 1.205 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.259 0.741 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.108 0.892 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.516 -11.876 -12.561 18.145 hybrid contribution -0.595 -1.161 0.344 1.349 sum -6.111 -13.037 -12.217 18.883 Atomic orbital electron populations 1.21800 0.95624 1.01640 1.00432 1.20708 0.93366 0.93907 0.86736 0.94149 1.21661 0.93138 0.82740 1.00081 0.90398 1.45932 1.59260 1.18005 1.09271 1.17917 0.79261 0.84046 0.84432 1.90732 1.51031 1.66235 1.34572 1.21535 0.96788 0.95418 0.89485 1.21758 0.98597 0.95216 0.98946 1.21424 0.95680 0.94554 0.97693 1.18982 1.00119 0.95974 0.94127 1.20962 0.98703 0.93829 0.98866 1.20987 0.99116 1.00076 0.92460 1.20938 0.98836 0.94623 0.98476 1.21021 0.96521 0.94920 0.97309 1.18891 0.97576 0.90400 0.93014 1.67936 1.07671 1.09392 1.29518 1.21786 0.95236 1.00564 0.98333 1.22168 0.98919 0.99665 0.97321 1.20833 0.83026 0.97214 0.94428 1.44164 1.03146 1.64829 1.18798 1.19182 0.94706 1.37768 0.86332 0.91132 1.25061 0.97710 0.99710 0.96919 1.70006 1.22894 1.44793 1.16949 0.86329 0.79898 0.79793 0.80977 1.21503 1.21907 1.20455 0.92639 0.91742 0.94188 0.74113 0.83279 0.83874 0.85213 0.85503 0.85093 0.83987 0.93086 0.91755 0.93465 0.92810 0.96453 0.89219 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.72 37.16 0.29 -2.28 16 2 C 0.16 3.22 3.19 -67.60 -0.22 3.01 16 3 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.13 2.39 2.32 -67.81 -0.16 2.23 16 5 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 6 N -0.67 -12.29 3.46 -54.49 -0.19 -12.47 16 7 C 0.56 9.93 7.78 -12.13 -0.09 9.83 16 8 O -0.55 -10.52 15.94 5.36 0.09 -10.44 16 9 C 0.12 1.93 6.75 -82.95 -0.56 1.37 16 10 C -0.12 -1.60 9.54 -39.44 -0.38 -1.98 16 11 C -0.07 -0.71 9.88 -39.26 -0.39 -1.10 16 12 C -0.09 -1.05 5.75 -106.72 -0.61 -1.66 16 13 C -0.10 -0.94 9.77 -39.52 -0.39 -1.32 16 14 C -0.11 -0.90 9.96 -39.89 -0.40 -1.30 16 15 C -0.11 -1.04 9.94 -39.94 -0.40 -1.43 16 16 C -0.08 -0.98 9.99 -39.41 -0.39 -1.37 16 17 C 0.12 1.76 6.61 -84.85 -0.56 1.20 16 18 N -0.43 -7.00 9.47 -7.54 -0.07 -7.08 16 19 C -0.12 -2.19 5.58 -26.65 -0.15 -2.34 16 20 C -0.14 -2.78 5.93 -26.58 -0.16 -2.94 16 21 C 0.17 3.96 5.29 -3.71 -0.02 3.94 16 22 N -0.59 -13.74 2.65 -164.77 -0.44 -14.17 16 23 C -0.25 -6.40 8.63 -15.06 -0.13 -6.53 16 24 H 0.07 1.77 6.20 -52.49 -0.33 1.45 16 25 C 0.00 0.12 4.97 -17.43 -0.09 0.04 16 26 N -0.90 -25.38 11.09 55.49 0.62 -24.76 16 27 Si 0.90 21.14 29.58 -169.99 -5.03 16.11 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 31 H 0.05 1.06 6.40 -51.93 -0.33 0.73 16 32 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.42 8.19 7.08 -40.82 -0.29 7.90 16 35 H 0.15 1.75 7.60 -52.49 -0.40 1.35 16 36 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 44 H 0.05 1.10 7.53 -51.93 -0.39 0.71 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.35 6.01 -51.93 -0.31 2.04 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -30.02 376.61 -10.77 -40.79 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.63 Total: 8.98 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -4.79 Total: -2.63 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.08 Total: -58.49 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.02 -10.77 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994275282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.341 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds