Wall clock time and date at job start Tue Mar 31 2020 22:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.58527 * 2 1 4 4 C 1.53187 * 109.58493 * 120.42547 * 2 1 3 5 5 H 1.09003 * 109.50211 * 294.37162 * 4 2 1 6 6 N 1.46501 * 109.49935 * 54.44018 * 4 2 1 7 7 C 1.34776 * 119.99868 * 204.99742 * 6 4 2 8 8 O 1.21497 * 120.00331 * 0.02562 * 7 6 4 9 9 C 1.48279 * 119.99668 * 179.97438 * 7 6 4 10 10 C 1.40282 * 119.23953 * 180.02562 * 9 7 6 11 11 C 1.36507 * 119.82138 * 179.97438 * 10 9 7 12 12 C 1.40760 * 118.23911 * 0.02562 * 11 10 9 13 13 C 1.40417 * 121.28473 * 180.02562 * 12 11 10 14 14 C 1.36135 * 119.65264 * 179.97438 * 13 12 11 15 15 C 1.39434 * 120.91797 * 0.02562 * 14 13 12 16 16 C 1.36005 * 121.07742 * 359.97438 * 15 14 13 17 17 C 1.40821 * 119.73941 * 0.02562 * 16 15 14 18 18 N 1.31874 * 119.24187 * 359.73218 * 9 7 6 19 19 C 1.53046 * 109.31290 * 174.42362 * 4 2 1 20 20 C 1.53038 * 109.53539 * 298.63483 * 19 4 2 21 21 C 1.52763 * 109.38349 * 61.23666 * 20 19 4 22 22 N 1.46918 * 109.01174 * 305.58873 * 21 20 19 23 23 C 1.36935 * 120.63189 * 233.58417 * 22 21 20 24 24 H 1.07999 * 120.00229 * 150.46267 * 23 22 21 25 25 C 1.38817 * 119.99965 * 330.46305 * 23 22 21 26 26 N 1.31616 * 119.99816 * 336.13243 * 25 23 22 27 27 Si 1.86793 * 119.99841 * 156.13496 * 25 23 22 28 28 H 1.48500 * 109.47661 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47045 * 239.99944 * 27 25 23 30 30 H 1.48499 * 109.47365 * 120.00053 * 27 25 23 31 31 H 1.09001 * 109.47318 * 180.28495 * 1 2 3 32 32 H 1.09001 * 109.47664 * 300.28443 * 1 2 3 33 33 H 1.09001 * 109.47443 * 60.28795 * 1 2 3 34 34 H 0.96994 * 120.00187 * 24.99689 * 6 4 2 35 35 H 1.07996 * 120.08972 * 359.97438 * 10 9 7 36 36 H 1.07997 * 120.88216 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.17506 * 359.95530 * 13 12 11 38 38 H 1.08001 * 119.54101 * 179.97438 * 14 13 12 39 39 H 1.07993 * 119.46338 * 179.97438 * 15 14 13 40 40 H 1.07999 * 120.12754 * 179.97438 * 16 15 14 41 41 H 1.08994 * 109.45730 * 58.65167 * 19 4 2 42 42 H 1.08995 * 109.45957 * 178.61296 * 19 4 2 43 43 H 1.09000 * 109.49918 * 181.31675 * 20 19 4 44 44 H 1.09004 * 109.50133 * 301.41467 * 20 19 4 45 45 H 1.08996 * 109.50942 * 185.70376 * 21 20 19 46 46 H 1.09007 * 109.43013 * 65.42703 * 21 20 19 47 47 H 0.97002 * 120.00378 * 354.26761 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7309 1.2445 5 1 1.7660 -0.1694 2.1367 6 7 1.4508 -2.0693 1.3050 7 6 1.3278 -2.6989 2.4903 8 8 1.7081 -2.1563 3.5087 9 6 0.7274 -4.0533 2.5515 10 6 0.6066 -4.6938 3.7937 11 6 0.0552 -5.9405 3.8639 12 6 -0.3775 -6.5456 2.6689 13 6 -0.9543 -7.8258 2.6671 14 6 -1.3616 -8.3794 1.4920 15 6 -1.2139 -7.6928 0.2874 16 6 -0.6598 -6.4513 0.2503 17 6 -0.2257 -5.8441 1.4445 18 7 0.3138 -4.6256 1.4377 19 6 3.5675 -0.8494 1.1691 20 6 3.9569 -1.6656 -0.0655 21 6 3.4643 -0.9503 -1.3222 22 7 2.0225 -0.6981 -1.1953 23 6 1.1536 -1.1108 -2.1699 24 1 0.1371 -1.3696 -1.9128 25 6 1.5793 -1.1966 -3.4884 26 7 2.6004 -0.4745 -3.8985 27 14 0.7030 -2.3369 -4.6804 28 1 -0.4039 -3.0331 -3.9766 29 1 1.6648 -3.3402 -5.2035 30 1 0.1517 -1.5445 -5.8089 31 1 -0.3634 -1.0276 0.0051 32 1 -0.3634 0.5182 0.8874 33 1 -0.3634 0.5093 -0.8925 34 1 1.1468 -2.5023 0.4920 35 1 0.9490 -4.2018 4.6921 36 1 -0.0457 -6.4495 4.8111 37 1 -1.0738 -8.3687 3.5931 38 1 -1.8047 -9.3643 1.4927 39 1 -1.5449 -8.1544 -0.6311 40 1 -0.5524 -5.9335 -0.6913 41 1 4.0061 0.1460 1.0995 42 1 3.9377 -1.3473 2.0652 43 1 5.0412 -1.7695 -0.1058 44 1 3.4983 -2.6528 -0.0085 45 1 3.6503 -1.5770 -2.1943 46 1 3.9928 -0.0031 -1.4310 47 1 3.0027 0.1782 -3.3043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994275295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:39 Heat of formation + Delta-G solvation = 38.479909 kcal Electronic energy + Delta-G solvation = -29969.711824 eV Core-core repulsion = 26117.612667 eV Total energy + Delta-G solvation = -3852.099157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.09909 -39.66630 -37.91293 -36.83504 -34.25604 -33.68764 -32.50108 -31.78537 -30.80763 -30.19839 -29.11926 -26.42462 -25.26430 -24.81490 -23.82033 -22.27345 -22.06337 -21.04406 -20.68898 -18.76529 -18.32965 -17.87623 -17.31875 -16.96484 -15.53892 -15.39833 -15.20446 -14.81998 -14.56326 -14.47733 -14.36568 -14.09509 -13.85699 -13.56895 -13.36305 -13.27330 -13.25307 -13.03298 -12.62322 -11.88898 -11.84252 -11.76467 -11.68744 -11.44923 -11.22032 -10.98059 -10.78688 -10.77573 -10.61464 -10.20742 -10.16674 -10.08374 -10.01837 -9.77121 -9.48346 -9.12497 -8.98131 -8.59327 -8.45892 -8.34238 -6.87060 -6.02991 -3.23780 0.06979 0.52204 1.78236 2.38889 3.29464 3.37488 3.50517 3.53096 3.65905 4.03042 4.03344 4.35685 4.57422 4.58196 4.61312 4.76990 4.94250 5.00323 5.16138 5.17643 5.27030 5.33431 5.48511 5.57055 5.58872 5.64554 5.73781 5.81546 5.85846 5.87823 6.05865 6.12801 6.17018 6.20212 6.21693 6.30462 6.36420 6.40938 6.52591 6.57777 6.61387 6.66192 6.83113 6.93801 7.01190 7.12539 7.22819 7.57700 8.01664 8.05018 8.51254 8.60017 9.11783 9.85928 10.29809 11.24039 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010225 B = 0.004346 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.690383 B = 6441.121698 C = 8448.295120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.162 3.838 3 H 0.039 0.961 4 C 0.130 3.870 5 H 0.079 0.921 6 N -0.675 5.675 7 C 0.560 3.440 8 O -0.547 6.547 9 C 0.121 3.879 10 C -0.125 4.125 11 C -0.067 4.067 12 C -0.089 4.089 13 C -0.105 4.105 14 C -0.108 4.108 15 C -0.108 4.108 16 C -0.079 4.079 17 C 0.124 3.876 18 N -0.434 5.434 19 C -0.121 4.121 20 C -0.136 4.136 21 C 0.152 3.848 22 N -0.593 5.593 23 C -0.347 4.347 24 H 0.062 0.938 25 C -0.022 4.022 26 N -0.918 5.918 27 Si 1.066 2.934 28 H -0.291 1.291 29 H -0.291 1.291 30 H -0.295 1.295 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.421 0.579 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.016 0.984 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 -13.158 13.432 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.055 3.945 3 H 0.056 0.944 4 C 0.024 3.976 5 H 0.097 0.903 6 N -0.326 5.326 7 C 0.344 3.656 8 O -0.425 6.425 9 C -0.033 4.033 10 C -0.145 4.145 11 C -0.093 4.093 12 C -0.092 4.092 13 C -0.124 4.124 14 C -0.126 4.126 15 C -0.128 4.128 16 C -0.098 4.098 17 C 0.001 3.999 18 N -0.145 5.145 19 C -0.159 4.159 20 C -0.175 4.175 21 C 0.026 3.974 22 N -0.318 5.318 23 C -0.476 4.476 24 H 0.080 0.920 25 C -0.224 4.224 26 N -0.558 5.558 27 Si 0.896 3.104 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.223 1.223 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.260 0.740 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.034 0.966 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.651 -12.942 11.682 18.328 hybrid contribution -0.187 -0.053 1.967 1.977 sum -5.838 -12.995 13.649 19.730 Atomic orbital electron populations 1.21772 0.95370 1.01702 1.00356 1.20700 0.93668 0.93597 0.86566 0.94369 1.21626 0.92966 0.82940 1.00061 0.90302 1.45924 1.59226 1.18026 1.09387 1.17928 0.79227 0.84063 0.84376 1.90731 1.51011 1.66289 1.34516 1.21509 0.96859 0.95414 0.89543 1.21752 0.98633 0.95247 0.98905 1.21426 0.95640 0.94549 0.97709 1.18985 1.00067 0.96009 0.94102 1.20961 0.98675 0.93864 0.98892 1.20994 0.99032 1.00097 0.92454 1.20947 0.98770 0.94621 0.98494 1.21032 0.96468 0.94937 0.97317 1.18895 0.97627 0.90333 0.93050 1.67935 1.07624 1.09459 1.29472 1.21773 0.95379 1.00500 0.98289 1.21962 0.99068 0.99777 0.96719 1.20871 0.84236 0.96753 0.95555 1.44223 1.02679 1.65296 1.19562 1.19978 0.96018 1.43425 0.88135 0.92032 1.25786 1.00045 1.00854 0.95714 1.70705 1.25770 1.21197 1.38092 0.83518 0.75222 0.76128 0.75514 1.21754 1.21823 1.22279 0.92559 0.94274 0.91737 0.74019 0.83298 0.83852 0.85201 0.85471 0.85029 0.83941 0.91742 0.92788 0.93185 0.92432 0.90352 0.96589 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 7.73 37.16 0.29 -2.28 16 2 C 0.16 3.26 3.20 -67.60 -0.22 3.04 16 3 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.13 2.39 2.32 -67.81 -0.16 2.23 16 5 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 6 N -0.68 -12.34 3.44 -54.49 -0.19 -12.53 16 7 C 0.56 9.95 7.78 -12.13 -0.09 9.86 16 8 O -0.55 -10.51 15.94 5.37 0.09 -10.42 16 9 C 0.12 1.92 6.75 -82.95 -0.56 1.36 16 10 C -0.12 -1.60 9.54 -39.44 -0.38 -1.98 16 11 C -0.07 -0.71 9.88 -39.25 -0.39 -1.10 16 12 C -0.09 -1.04 5.75 -106.71 -0.61 -1.66 16 13 C -0.11 -0.93 9.77 -39.52 -0.39 -1.32 16 14 C -0.11 -0.89 9.96 -39.89 -0.40 -1.28 16 15 C -0.11 -1.02 9.94 -39.94 -0.40 -1.42 16 16 C -0.08 -0.98 9.99 -39.41 -0.39 -1.37 16 17 C 0.12 1.75 6.61 -84.85 -0.56 1.19 16 18 N -0.43 -7.03 9.47 -7.54 -0.07 -7.10 16 19 C -0.12 -2.16 5.58 -26.69 -0.15 -2.31 16 20 C -0.14 -2.62 5.91 -26.83 -0.16 -2.78 16 21 C 0.15 3.43 4.66 -3.94 -0.02 3.42 16 22 N -0.59 -13.82 2.49 -165.04 -0.41 -14.23 16 23 C -0.35 -8.96 8.49 -15.06 -0.13 -9.08 16 24 H 0.06 1.60 6.28 -52.49 -0.33 1.27 16 25 C -0.02 -0.59 4.70 -17.43 -0.08 -0.67 16 26 N -0.92 -26.65 12.46 55.49 0.69 -25.96 16 27 Si 1.07 24.67 29.98 -169.99 -5.10 19.57 16 28 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 30 H -0.30 -6.89 7.11 56.52 0.40 -6.48 16 31 H 0.06 1.10 6.39 -51.93 -0.33 0.77 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.32 7.62 -51.93 -0.40 0.92 16 34 H 0.42 8.29 7.07 -40.82 -0.29 8.00 16 35 H 0.15 1.75 7.60 -52.49 -0.40 1.35 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.16 7.53 -51.93 -0.39 0.77 16 45 H 0.08 2.01 6.40 -51.93 -0.33 1.67 16 46 H 0.02 0.37 7.85 -51.93 -0.41 -0.03 16 47 H 0.27 7.91 6.69 -40.82 -0.27 7.64 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -30.59 375.68 -10.68 -41.27 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.57 Total: 9.86 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -4.79 Total: -6.14 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.02 Total: -59.82 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.10 Total: 19.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.59 -10.68 -41.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994275295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.755 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds