Wall clock time and date at job start Tue Mar 31 2020 22:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.58527 * 2 1 4 4 C 1.53187 * 109.58493 * 120.42547 * 2 1 3 5 5 H 1.09003 * 109.50211 * 294.37162 * 4 2 1 6 6 N 1.46501 * 109.49935 * 54.44018 * 4 2 1 7 7 C 1.34776 * 119.99868 * 204.99742 * 6 4 2 8 8 O 1.21497 * 120.00331 * 0.02562 * 7 6 4 9 9 C 1.48279 * 119.99668 * 179.97438 * 7 6 4 10 10 C 1.40282 * 119.23953 * 180.02562 * 9 7 6 11 11 C 1.36507 * 119.82138 * 179.97438 * 10 9 7 12 12 C 1.40760 * 118.23911 * 0.02562 * 11 10 9 13 13 C 1.40417 * 121.28473 * 180.02562 * 12 11 10 14 14 C 1.36135 * 119.65264 * 179.97438 * 13 12 11 15 15 C 1.39434 * 120.91797 * 0.02562 * 14 13 12 16 16 C 1.36005 * 121.07742 * 359.97438 * 15 14 13 17 17 C 1.40821 * 119.73941 * 0.02562 * 16 15 14 18 18 N 1.31874 * 119.24187 * 359.73218 * 9 7 6 19 19 C 1.53046 * 109.31290 * 174.42362 * 4 2 1 20 20 C 1.53038 * 109.53539 * 298.63483 * 19 4 2 21 21 C 1.52763 * 109.38349 * 61.23666 * 20 19 4 22 22 N 1.46918 * 109.01174 * 305.58873 * 21 20 19 23 23 C 1.36935 * 120.63189 * 233.58417 * 22 21 20 24 24 H 1.07999 * 120.00229 * 150.46267 * 23 22 21 25 25 C 1.38817 * 119.99965 * 330.46305 * 23 22 21 26 26 N 1.31616 * 119.99816 * 336.13243 * 25 23 22 27 27 Si 1.86793 * 119.99841 * 156.13496 * 25 23 22 28 28 H 1.48500 * 109.47661 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47045 * 239.99944 * 27 25 23 30 30 H 1.48499 * 109.47365 * 120.00053 * 27 25 23 31 31 H 1.09001 * 109.47318 * 180.28495 * 1 2 3 32 32 H 1.09001 * 109.47664 * 300.28443 * 1 2 3 33 33 H 1.09001 * 109.47443 * 60.28795 * 1 2 3 34 34 H 0.96994 * 120.00187 * 24.99689 * 6 4 2 35 35 H 1.07996 * 120.08972 * 359.97438 * 10 9 7 36 36 H 1.07997 * 120.88216 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.17506 * 359.95530 * 13 12 11 38 38 H 1.08001 * 119.54101 * 179.97438 * 14 13 12 39 39 H 1.07993 * 119.46338 * 179.97438 * 15 14 13 40 40 H 1.07999 * 120.12754 * 179.97438 * 16 15 14 41 41 H 1.08994 * 109.45730 * 58.65167 * 19 4 2 42 42 H 1.08995 * 109.45957 * 178.61296 * 19 4 2 43 43 H 1.09000 * 109.49918 * 181.31675 * 20 19 4 44 44 H 1.09004 * 109.50133 * 301.41467 * 20 19 4 45 45 H 1.08996 * 109.50942 * 185.70376 * 21 20 19 46 46 H 1.09007 * 109.43013 * 65.42703 * 21 20 19 47 47 H 0.97002 * 120.00378 * 354.26761 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7309 1.2445 5 1 1.7660 -0.1694 2.1367 6 7 1.4508 -2.0693 1.3050 7 6 1.3278 -2.6989 2.4903 8 8 1.7081 -2.1563 3.5087 9 6 0.7274 -4.0533 2.5515 10 6 0.6066 -4.6938 3.7937 11 6 0.0552 -5.9405 3.8639 12 6 -0.3775 -6.5456 2.6689 13 6 -0.9543 -7.8258 2.6671 14 6 -1.3616 -8.3794 1.4920 15 6 -1.2139 -7.6928 0.2874 16 6 -0.6598 -6.4513 0.2503 17 6 -0.2257 -5.8441 1.4445 18 7 0.3138 -4.6256 1.4377 19 6 3.5675 -0.8494 1.1691 20 6 3.9569 -1.6656 -0.0655 21 6 3.4643 -0.9503 -1.3222 22 7 2.0225 -0.6981 -1.1953 23 6 1.1536 -1.1108 -2.1699 24 1 0.1371 -1.3696 -1.9128 25 6 1.5793 -1.1966 -3.4884 26 7 2.6004 -0.4745 -3.8985 27 14 0.7030 -2.3369 -4.6804 28 1 -0.4039 -3.0331 -3.9766 29 1 1.6648 -3.3402 -5.2035 30 1 0.1517 -1.5445 -5.8089 31 1 -0.3634 -1.0276 0.0051 32 1 -0.3634 0.5182 0.8874 33 1 -0.3634 0.5093 -0.8925 34 1 1.1468 -2.5023 0.4920 35 1 0.9490 -4.2018 4.6921 36 1 -0.0457 -6.4495 4.8111 37 1 -1.0738 -8.3687 3.5931 38 1 -1.8047 -9.3643 1.4927 39 1 -1.5449 -8.1544 -0.6311 40 1 -0.5524 -5.9335 -0.6913 41 1 4.0061 0.1460 1.0995 42 1 3.9377 -1.3473 2.0652 43 1 5.0412 -1.7695 -0.1058 44 1 3.4983 -2.6528 -0.0085 45 1 3.6503 -1.5770 -2.1943 46 1 3.9928 -0.0031 -1.4310 47 1 3.0027 0.1782 -3.3043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994275295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:38 Heat of formation + Delta-G solvation = 21.582355 kcal Electronic energy + Delta-G solvation = -29970.444557 eV Core-core repulsion = 26117.612667 eV Total energy + Delta-G solvation = -3852.831890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.08451 -41.03406 -39.39627 -37.82096 -35.92877 -34.68818 -34.10760 -33.45442 -31.87208 -31.14706 -30.66212 -28.05364 -26.84685 -26.21540 -24.72817 -23.68870 -23.08715 -22.64581 -22.15212 -20.37510 -19.42552 -18.99145 -18.81626 -18.14707 -17.02490 -16.55252 -16.49898 -16.25433 -15.93594 -15.60460 -15.49708 -15.43582 -15.36103 -15.07832 -14.72502 -14.63410 -14.36449 -14.20053 -14.04480 -13.49794 -13.24169 -12.84915 -12.78338 -12.69258 -12.62076 -12.56199 -12.45468 -12.33021 -11.89850 -11.87121 -11.76087 -11.64905 -11.55298 -11.38842 -10.99530 -10.57656 -10.43298 -10.08943 -9.80192 -9.28507 -8.86606 -8.14250 -5.33090 -0.83989 -0.34777 0.92313 1.38798 1.59226 1.66229 1.81622 2.08214 2.22538 2.67087 2.98402 3.08565 3.27608 3.45215 3.56350 3.66981 3.83500 3.85859 3.93119 3.94187 4.06032 4.16011 4.23388 4.24235 4.37720 4.42860 4.50304 4.53315 4.57699 4.77738 4.81458 4.83818 4.84824 4.92235 4.99088 5.03392 5.05450 5.08096 5.20208 5.27767 5.34684 5.37135 5.37893 5.43992 5.49424 5.55424 5.86470 5.97325 6.42075 6.47864 6.72477 7.08660 7.12161 7.83963 8.28289 9.10057 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010225 B = 0.004346 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.690383 B = 6441.121698 C = 8448.295120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.137 3.863 5 H 0.088 0.912 6 N -0.679 5.679 7 C 0.561 3.439 8 O -0.566 6.566 9 C 0.095 3.905 10 C -0.140 4.140 11 C -0.046 4.046 12 C -0.101 4.101 13 C -0.097 4.097 14 C -0.103 4.103 15 C -0.092 4.092 16 C -0.117 4.117 17 C 0.097 3.903 18 N -0.468 5.468 19 C -0.114 4.114 20 C -0.123 4.123 21 C 0.160 3.840 22 N -0.604 5.604 23 C -0.334 4.334 24 H 0.059 0.941 25 C -0.074 4.074 26 N -0.948 5.948 27 Si 1.109 2.891 28 H -0.273 1.273 29 H -0.293 1.293 30 H -0.295 1.295 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.413 0.587 35 H 0.156 0.844 36 H 0.190 0.810 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.125 0.875 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.007 0.993 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 -16.263 15.783 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.053 3.947 3 H 0.057 0.943 4 C 0.031 3.969 5 H 0.106 0.894 6 N -0.329 5.329 7 C 0.346 3.654 8 O -0.445 6.445 9 C -0.058 4.058 10 C -0.161 4.161 11 C -0.071 4.071 12 C -0.103 4.103 13 C -0.116 4.116 14 C -0.121 4.121 15 C -0.112 4.112 16 C -0.136 4.136 17 C -0.027 4.027 18 N -0.180 5.180 19 C -0.152 4.152 20 C -0.162 4.162 21 C 0.034 3.966 22 N -0.329 5.329 23 C -0.464 4.464 24 H 0.077 0.923 25 C -0.271 4.271 26 N -0.591 5.591 27 Si 0.936 3.064 28 H -0.198 1.198 29 H -0.220 1.220 30 H -0.223 1.223 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.250 0.750 35 H 0.174 0.826 36 H 0.207 0.793 37 H 0.187 0.813 38 H 0.184 0.816 39 H 0.174 0.826 40 H 0.143 0.857 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.025 0.975 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.179 -16.042 14.072 22.515 hybrid contribution 0.193 0.779 1.277 1.509 sum -6.985 -15.263 15.349 22.746 Atomic orbital electron populations 1.21665 0.94569 1.01201 1.00780 1.20844 0.94376 0.93521 0.86006 0.94316 1.21487 0.93242 0.83153 0.99040 0.89437 1.45915 1.59598 1.17932 1.09414 1.18271 0.78587 0.84845 0.83651 1.90696 1.51921 1.67106 1.34808 1.21333 0.98683 0.94841 0.90941 1.21840 1.00007 0.96476 0.97798 1.21905 0.92840 0.93272 0.99098 1.19317 1.00303 0.97230 0.93437 1.21427 0.96808 0.92454 1.00884 1.21474 0.97833 1.01355 0.91433 1.21334 0.96243 0.93136 1.00477 1.21073 0.99356 0.96689 0.96447 1.19267 0.98383 0.90155 0.94865 1.67804 1.08924 1.11067 1.30187 1.21725 0.95082 1.00916 0.97520 1.21792 1.00001 0.98765 0.95623 1.20693 0.84111 0.95928 0.95857 1.44371 1.02690 1.65936 1.19942 1.20140 0.96137 1.41566 0.88534 0.92346 1.26928 1.00526 1.01922 0.97691 1.70821 1.27611 1.22596 1.38061 0.82919 0.74831 0.74656 0.74012 1.19766 1.21970 1.22279 0.93503 0.91546 0.93483 0.74980 0.82647 0.79333 0.81278 0.81550 0.82590 0.85729 0.90498 0.92094 0.91273 0.93705 0.93788 0.97476 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 7.73 71.98 0.56 -4.24 16 2 C 0.16 6.48 3.20 44.97 0.14 6.62 16 3 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 4 C 0.14 5.02 2.32 45.07 0.10 5.13 16 5 H 0.09 3.09 7.58 -2.39 -0.02 3.08 16 6 N -0.68 -25.41 3.44 -444.62 -1.53 -26.95 16 7 C 0.56 20.30 7.78 86.92 0.68 20.98 16 8 O -0.57 -21.76 15.94 -3.71 -0.06 -21.81 16 9 C 0.09 3.06 6.75 42.31 0.29 3.35 16 10 C -0.14 -3.48 9.54 22.36 0.21 -3.26 16 11 C -0.05 -0.83 9.88 22.48 0.22 -0.60 16 12 C -0.10 -2.10 5.75 -21.22 -0.12 -2.22 16 13 C -0.10 -1.27 9.77 22.31 0.22 -1.05 16 14 C -0.10 -1.22 9.96 22.07 0.22 -1.00 16 15 C -0.09 -1.51 9.94 22.04 0.22 -1.29 16 16 C -0.12 -2.90 9.99 22.38 0.22 -2.67 16 17 C 0.10 2.73 6.61 40.47 0.27 2.99 16 18 N -0.47 -15.74 9.47 -177.76 -1.68 -17.42 16 19 C -0.11 -4.02 5.58 30.62 0.17 -3.85 16 20 C -0.12 -4.78 5.91 30.53 0.18 -4.60 16 21 C 0.16 7.51 4.66 86.22 0.40 7.91 16 22 N -0.60 -29.06 2.49 -676.07 -1.69 -30.75 16 23 C -0.33 -17.80 8.49 84.03 0.71 -17.09 16 24 H 0.06 3.12 6.28 -2.91 -0.02 3.10 16 25 C -0.07 -4.14 4.70 84.86 0.40 -3.75 16 26 N -0.95 -57.19 12.46 21.65 0.27 -56.92 16 27 Si 1.11 51.11 29.98 68.60 2.06 53.17 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 30 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 31 H 0.05 1.88 6.39 -2.39 -0.02 1.86 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 1.95 7.62 -2.39 -0.02 1.93 16 34 H 0.41 16.98 7.07 -92.71 -0.66 16.32 16 35 H 0.16 3.51 7.60 -2.91 -0.02 3.48 16 36 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 38 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 39 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.12 3.36 8.06 -2.91 -0.02 3.33 16 41 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.04 1.86 7.53 -2.38 -0.02 1.84 16 45 H 0.04 2.36 6.40 -2.39 -0.02 2.35 16 46 H 0.01 0.35 7.85 -2.38 -0.02 0.33 16 47 H 0.26 15.66 6.69 -92.71 -0.62 15.04 16 Total: -1.00 -70.52 375.68 2.95 -67.57 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.49 Total: 31.75 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 5.09 Total: 1.35 kcal Atomic # 7 Polarization: -127.40 SS G_CDS: -4.63 Total: -132.03 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.06 Total: 53.17 kcal Total: -70.52 2.95 -67.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994275295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.157 kcal (2) G-P(sol) polarization free energy of solvation -70.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds