Wall clock time and date at job start Tue Mar 31 2020 22:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.58885 * 2 1 4 4 C 1.53188 * 109.70384 * 239.64187 * 2 1 3 5 5 H 1.09000 * 109.49829 * 305.45947 * 4 2 1 6 6 N 1.46497 * 109.49609 * 65.52600 * 4 2 1 7 7 C 1.34782 * 119.99983 * 205.00138 * 6 4 2 8 8 O 1.21599 * 119.99803 * 359.97438 * 7 6 4 9 9 C 1.47446 * 120.00097 * 180.02562 * 7 6 4 10 10 C 1.38862 * 120.46024 * 354.21576 * 9 7 6 11 11 C 1.38901 * 120.67533 * 179.76707 * 10 9 7 12 12 C 1.36376 * 121.27392 * 0.52603 * 11 10 9 13 13 C 1.40399 * 119.98389 * 359.73589 * 12 11 10 14 14 C 1.40469 * 121.95685 * 179.97438 * 13 12 11 15 15 N 1.31277 * 119.88081 * 180.02562 * 14 13 12 16 16 C 1.32547 * 122.73853 * 359.97438 * 15 14 13 17 17 C 1.36332 * 121.81963 * 0.02562 * 16 15 14 18 18 C 1.40290 * 118.69978 * 0.02562 * 17 16 15 19 19 C 1.53046 * 109.31557 * 185.50842 * 4 2 1 20 20 C 1.53044 * 109.53190 * 61.36273 * 19 4 2 21 21 C 1.53617 * 109.24822 * 298.51206 * 20 19 4 22 22 N 1.46926 * 109.58465 * 120.28169 * 2 1 3 23 23 C 1.36940 * 120.63209 * 353.51854 * 22 2 1 24 24 H 1.07991 * 119.99987 * 30.23552 * 23 22 2 25 25 C 1.38812 * 119.99459 * 210.23920 * 23 22 2 26 26 N 1.31621 * 120.00535 * 23.62944 * 25 23 22 27 27 Si 1.86808 * 119.99546 * 203.62511 * 25 23 22 28 28 H 1.48498 * 109.47069 * 180.02562 * 27 25 23 29 29 H 1.48503 * 109.47090 * 300.00398 * 27 25 23 30 30 H 1.48498 * 109.46895 * 60.00419 * 27 25 23 31 31 H 1.09005 * 109.47261 * 299.72013 * 1 2 3 32 32 H 1.08997 * 109.47152 * 59.71426 * 1 2 3 33 33 H 1.08999 * 109.47129 * 179.71485 * 1 2 3 34 34 H 0.96995 * 120.00765 * 24.99945 * 6 4 2 35 35 H 1.08005 * 119.66160 * 0.02592 * 10 9 7 36 36 H 1.08000 * 119.36347 * 180.24097 * 11 10 9 37 37 H 1.08001 * 120.00916 * 179.76728 * 12 11 10 38 38 H 1.07993 * 120.05936 * 0.02562 * 14 13 12 39 39 H 1.08003 * 119.09385 * 180.02562 * 16 15 14 40 40 H 1.07999 * 120.65115 * 180.02562 * 17 16 15 41 41 H 1.08993 * 109.46153 * 181.38704 * 19 4 2 42 42 H 1.08997 * 109.45524 * 301.36476 * 19 4 2 43 43 H 1.09000 * 109.49743 * 58.59709 * 20 19 4 44 44 H 1.09002 * 109.48962 * 178.65044 * 20 19 4 45 45 H 1.08995 * 109.74031 * 295.12533 * 21 20 19 46 46 H 1.08997 * 109.66719 * 174.55342 * 21 20 19 47 47 H 0.96998 * 119.99412 * 5.79597 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 1 1.6080 -1.7257 -1.2904 6 7 1.6727 0.0255 -2.4433 7 6 1.5520 -0.6071 -3.6273 8 8 1.7538 -1.8040 -3.7004 9 6 1.1764 0.1523 -4.8340 10 6 0.8285 1.4935 -4.7419 11 6 0.4785 2.2144 -5.8764 12 6 0.4552 1.6290 -7.1079 13 6 0.7945 0.2737 -7.2471 14 6 0.7839 -0.3709 -8.4951 15 7 1.1080 -1.6403 -8.5783 16 6 1.4532 -2.3627 -7.5220 17 6 1.4939 -1.8288 -6.2682 18 6 1.1592 -0.4768 -6.1005 19 6 3.5706 -0.8444 -1.1674 20 6 3.9601 -1.6608 0.0672 21 6 3.4660 -0.9376 1.3291 22 7 2.0225 -0.6980 1.1954 23 6 1.1533 -1.1125 2.1690 24 1 0.1421 -1.3877 1.9086 25 6 1.5722 -1.1788 3.4908 26 7 2.5839 -0.4421 3.8984 27 14 0.6999 -2.3137 4.6911 28 1 1.3336 -2.2002 6.0293 29 1 -0.7308 -1.9274 4.7870 30 1 0.8032 -3.7152 4.2113 31 1 -0.3634 0.5095 0.8925 32 1 -0.3633 0.5182 -0.8874 33 1 -0.3633 -1.0276 -0.0051 34 1 1.5121 0.9803 -2.3851 35 1 0.8341 1.9821 -3.7787 36 1 0.2154 3.2574 -5.7808 37 1 0.1764 2.2079 -7.9760 38 1 0.5097 0.1767 -9.3846 39 1 1.7094 -3.4031 -7.6581 40 1 1.7784 -2.4347 -5.4207 41 1 3.9430 -1.3409 -2.0634 42 1 4.0071 0.1518 -1.0961 43 1 3.5036 -2.6489 0.0088 44 1 5.0445 -1.7630 0.1083 45 1 3.9860 0.0144 1.4353 46 1 3.6537 -1.5585 2.2051 47 1 2.9827 0.2081 3.2991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994422323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:45 Heat of formation + Delta-G solvation = 21.649457 kcal Electronic energy + Delta-G solvation = -29335.077216 eV Core-core repulsion = 25482.248236 eV Total energy + Delta-G solvation = -3852.828980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.13627 -40.89865 -39.40465 -38.14530 -36.22773 -34.46594 -33.88765 -33.55636 -32.23988 -31.26276 -30.25805 -27.96164 -26.85111 -25.68021 -24.77102 -24.37797 -23.32752 -22.57761 -21.71178 -21.08233 -19.25697 -18.91300 -18.77864 -17.65500 -17.27558 -17.07978 -16.41509 -16.31984 -16.17746 -15.86871 -15.52199 -15.45427 -15.25065 -15.03583 -14.81123 -14.75677 -14.45693 -14.18163 -13.58121 -13.51233 -13.09330 -13.07661 -13.02631 -12.89986 -12.77823 -12.69484 -12.56572 -12.06975 -11.95736 -11.92849 -11.82524 -11.72985 -11.19708 -11.14094 -10.96184 -10.49994 -10.32889 -10.21326 -10.11157 -9.12839 -8.91627 -8.19551 -5.39481 -0.89982 -0.14919 0.60578 1.58111 1.65062 1.69189 1.83245 1.96375 2.22243 2.66175 3.07834 3.23292 3.40027 3.49014 3.55050 3.61815 3.75873 3.78886 3.89163 3.90497 3.94632 4.05107 4.17565 4.21384 4.34611 4.38743 4.48592 4.53833 4.64270 4.68351 4.71874 4.80434 4.82456 4.90495 4.92358 4.98692 5.04750 5.07959 5.16960 5.23650 5.25458 5.31940 5.34807 5.36898 5.52466 5.66689 5.77158 5.92534 6.43136 6.45804 6.94639 7.06050 7.15056 7.78942 8.22855 9.04768 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.002587 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.750419 B =10820.006566 C =11148.063612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.167 3.833 3 H 0.037 0.963 4 C 0.149 3.851 5 H 0.057 0.943 6 N -0.699 5.699 7 C 0.557 3.443 8 O -0.573 6.573 9 C -0.161 4.161 10 C -0.038 4.038 11 C -0.132 4.132 12 C -0.040 4.040 13 C -0.137 4.137 14 C 0.151 3.849 15 N -0.515 5.515 16 C 0.068 3.932 17 C -0.184 4.184 18 C -0.007 4.007 19 C -0.109 4.109 20 C -0.125 4.125 21 C 0.155 3.845 22 N -0.608 5.608 23 C -0.345 4.345 24 H 0.057 0.943 25 C -0.072 4.072 26 N -0.944 5.944 27 Si 1.108 2.892 28 H -0.293 1.293 29 H -0.275 1.275 30 H -0.285 1.285 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.411 0.589 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.182 0.818 38 H 0.205 0.795 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.015 0.985 46 H 0.045 0.955 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.980 9.100 -24.363 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.060 3.940 3 H 0.055 0.945 4 C 0.042 3.958 5 H 0.075 0.925 6 N -0.350 5.350 7 C 0.346 3.654 8 O -0.454 6.454 9 C -0.164 4.164 10 C -0.058 4.058 11 C -0.149 4.149 12 C -0.060 4.060 13 C -0.139 4.139 14 C -0.021 4.021 15 N -0.223 5.223 16 C -0.074 4.074 17 C -0.203 4.203 18 C -0.013 4.013 19 C -0.148 4.148 20 C -0.164 4.164 21 C 0.029 3.971 22 N -0.333 5.333 23 C -0.475 4.475 24 H 0.074 0.926 25 C -0.269 4.269 26 N -0.586 5.586 27 Si 0.933 3.067 28 H -0.219 1.219 29 H -0.201 1.201 30 H -0.212 1.212 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.249 0.751 35 H 0.173 0.827 36 H 0.192 0.808 37 H 0.199 0.801 38 H 0.222 0.778 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.033 0.967 46 H 0.063 0.937 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.812 7.116 -23.549 24.894 hybrid contribution 0.253 0.802 -0.066 0.844 sum -3.559 7.918 -23.614 25.159 Atomic orbital electron populations 1.21698 0.94469 1.00883 1.01179 1.20709 0.94304 0.93415 0.85558 0.94537 1.21298 0.94932 0.95560 0.84010 0.92520 1.45786 1.69488 1.12738 1.07014 1.18481 0.76431 0.86762 0.83682 1.90593 1.52812 1.16563 1.85459 1.19745 1.09015 0.95883 0.91762 1.21939 0.91239 0.91183 1.01478 1.21322 1.00039 1.02356 0.91188 1.21717 0.92642 0.91530 1.00072 1.19330 1.03831 0.96756 0.93971 1.23919 0.91494 0.89916 0.96753 1.67473 1.12268 1.08821 1.33725 1.22492 0.96316 1.00681 0.87875 1.22810 1.00912 0.96163 1.00437 1.18193 0.96194 0.93982 0.92955 1.21686 0.95222 1.00503 0.97377 1.21995 1.00525 0.98669 0.95229 1.20949 0.83960 0.96216 0.95931 1.44337 1.02692 1.66476 1.19749 1.20124 0.96779 1.42065 0.88547 0.92561 1.27022 1.00490 1.01612 0.97775 1.70887 1.27804 1.21963 1.37918 0.82937 0.74986 0.74712 0.74042 1.21888 1.20110 1.21205 0.93386 0.90525 0.94502 0.75057 0.82730 0.80765 0.80089 0.77802 0.82043 0.83166 0.92541 0.91190 0.93663 0.90529 0.96749 0.93688 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.48 7.84 71.98 0.56 -3.91 16 2 C 0.17 6.40 3.02 44.97 0.14 6.53 16 3 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.15 5.15 2.00 45.07 0.09 5.24 16 5 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 6 N -0.70 -18.66 4.54 -445.41 -2.02 -20.69 16 7 C 0.56 16.46 7.70 86.67 0.67 17.12 16 8 O -0.57 -21.41 13.15 -4.03 -0.05 -21.46 16 9 C -0.16 -3.74 5.90 -19.92 -0.12 -3.86 16 10 C -0.04 -0.55 9.51 22.58 0.21 -0.33 16 11 C -0.13 -1.14 9.92 21.99 0.22 -0.92 16 12 C -0.04 -0.36 9.79 22.36 0.22 -0.15 16 13 C -0.14 -2.38 5.74 -21.33 -0.12 -2.50 16 14 C 0.15 2.45 11.05 85.32 0.94 3.39 16 15 N -0.51 -11.64 10.30 -195.40 -2.01 -13.65 16 16 C 0.07 1.69 11.07 84.14 0.93 2.62 16 17 C -0.18 -5.15 9.28 22.32 0.21 -4.94 16 18 C -0.01 -0.18 5.77 -21.11 -0.12 -0.30 16 19 C -0.11 -3.71 5.46 30.62 0.17 -3.54 16 20 C -0.12 -4.77 6.10 30.82 0.19 -4.58 16 21 C 0.16 7.19 4.72 86.50 0.41 7.60 16 22 N -0.61 -29.30 2.82 -674.43 -1.90 -31.20 16 23 C -0.35 -18.65 8.46 84.03 0.71 -17.94 16 24 H 0.06 3.04 6.31 -2.92 -0.02 3.02 16 25 C -0.07 -4.03 4.71 84.86 0.40 -3.63 16 26 N -0.94 -56.35 12.48 21.65 0.27 -56.08 16 27 Si 1.11 50.83 29.98 68.60 2.06 52.88 16 28 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 29 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 30 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 31 H 0.05 1.87 7.63 -2.38 -0.02 1.85 16 32 H 0.08 2.10 7.81 -2.39 -0.02 2.09 16 33 H 0.04 1.44 7.43 -2.39 -0.02 1.43 16 34 H 0.41 8.07 6.68 -92.71 -0.62 7.45 16 35 H 0.16 1.41 6.43 -2.91 -0.02 1.39 16 36 H 0.17 0.22 8.06 -2.91 -0.02 0.19 16 37 H 0.18 0.06 8.06 -2.91 -0.02 0.04 16 38 H 0.21 1.38 8.06 -2.91 -0.02 1.35 16 39 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.15 4.93 5.06 -2.91 -0.01 4.91 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.01 0.68 7.84 -2.39 -0.02 0.66 16 46 H 0.04 2.39 6.43 -2.39 -0.02 2.37 16 47 H 0.26 15.44 6.69 -92.71 -0.62 14.82 16 Total: -1.00 -75.74 371.45 2.57 -73.17 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.53 Total: 21.13 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.70 Total: -4.10 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -5.67 Total: -121.62 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.05 Total: -21.46 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.06 Total: 52.88 kcal Total: -75.74 2.57 -73.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994422323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.820 kcal (2) G-P(sol) polarization free energy of solvation -75.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds