Wall clock time and date at job start Tue Mar 31 2020 22:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.58362 * 2 1 4 4 C 1.53194 * 109.58622 * 239.71777 * 2 1 3 5 5 H 1.08999 * 109.49567 * 65.59790 * 4 2 1 6 6 N 1.46493 * 109.49753 * 305.52588 * 4 2 1 7 7 C 1.34782 * 120.00115 * 155.00019 * 6 4 2 8 8 O 1.21604 * 119.99503 * 0.02562 * 7 6 4 9 9 C 1.47439 * 120.00064 * 180.02562 * 7 6 4 10 10 C 1.38950 * 121.17167 * 359.97438 * 9 7 6 11 11 N 1.32197 * 121.31668 * 179.97438 * 10 9 7 12 12 C 1.31199 * 123.69822 * 359.97438 * 11 10 9 13 13 C 1.40384 * 120.91314 * 0.02562 * 12 11 10 14 14 C 1.40401 * 122.13890 * 180.02562 * 13 12 11 15 15 C 1.36227 * 119.47928 * 179.97438 * 14 13 12 16 16 C 1.39292 * 121.11225 * 0.02562 * 15 14 13 17 17 C 1.36440 * 120.94507 * 0.02562 * 16 15 14 18 18 C 1.39690 * 119.43666 * 359.95267 * 17 16 15 19 19 C 1.53042 * 109.31180 * 185.57593 * 4 2 1 20 20 C 1.53036 * 109.53922 * 61.36219 * 19 4 2 21 21 C 1.53191 * 109.31433 * 298.63868 * 20 19 4 22 22 N 1.46924 * 109.58758 * 120.42535 * 2 1 3 23 23 C 1.36934 * 120.63258 * 353.37640 * 22 2 1 24 24 H 1.08004 * 120.00025 * 29.00802 * 23 22 2 25 25 C 1.38811 * 120.00333 * 209.00892 * 23 22 2 26 26 N 1.31622 * 119.99601 * 15.04165 * 25 23 22 27 27 Si 1.86794 * 120.00389 * 195.04459 * 25 23 22 28 28 H 1.48508 * 109.46928 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47559 * 119.99609 * 27 25 23 30 30 H 1.48497 * 109.47187 * 240.00025 * 27 25 23 31 31 H 1.08997 * 109.46721 * 180.28186 * 1 2 3 32 32 H 1.09002 * 109.46924 * 300.28053 * 1 2 3 33 33 H 1.09001 * 109.47370 * 60.28473 * 1 2 3 34 34 H 0.96998 * 120.00052 * 335.00231 * 6 4 2 35 35 H 1.07996 * 119.34551 * 0.02562 * 10 9 7 36 36 H 1.07998 * 119.54466 * 180.02562 * 12 11 10 37 37 H 1.07991 * 120.25991 * 0.02562 * 14 13 12 38 38 H 1.08002 * 119.44590 * 180.02562 * 15 14 13 39 39 H 1.07997 * 119.52939 * 179.97438 * 16 15 14 40 40 H 1.08004 * 120.28459 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.46112 * 181.38931 * 19 4 2 42 42 H 1.08999 * 109.46097 * 301.34405 * 19 4 2 43 43 H 1.08999 * 109.50312 * 178.68268 * 20 19 4 44 44 H 1.09004 * 109.52403 * 58.60180 * 20 19 4 45 45 H 1.09003 * 109.58792 * 294.84339 * 21 20 19 46 46 H 1.09003 * 109.58745 * 174.42472 * 21 20 19 47 47 H 0.96999 * 119.99269 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2464 5 1 1.7656 -0.1643 -2.1371 6 7 1.4515 -2.0663 -1.3097 7 6 1.3284 -2.6933 -2.4965 8 8 1.7094 -2.1480 -3.5145 9 6 0.7320 -4.0401 -2.5603 10 6 0.2892 -4.6858 -1.4123 11 7 -0.2464 -5.8931 -1.4663 12 6 -0.4037 -6.5706 -2.5788 13 6 0.0006 -6.0358 -3.8122 14 6 -0.1560 -6.7378 -5.0180 15 6 0.2552 -6.1668 -6.1844 16 6 0.8292 -4.8977 -6.2013 17 6 0.9972 -4.1882 -5.0481 18 6 0.5862 -4.7439 -3.8341 19 6 3.5675 -0.8464 -1.1712 20 6 3.9570 -1.6656 0.0613 21 6 3.4651 -0.9485 1.3225 22 7 2.0226 -0.7010 1.1936 23 6 1.1538 -1.1154 2.1676 24 1 0.1359 -1.3692 1.9109 25 6 1.5813 -1.2092 3.4849 26 7 2.7046 -0.6315 3.8549 27 14 0.5627 -2.1555 4.7324 28 1 -0.6464 -2.7059 4.0687 29 1 1.3719 -3.2688 5.2900 30 1 0.1523 -1.2435 5.8302 31 1 -0.3632 -1.0276 0.0051 32 1 -0.3633 0.5182 0.8875 33 1 -0.3634 0.5094 -0.8925 34 1 1.1479 -2.5013 -0.4976 35 1 0.3837 -4.1910 -0.4570 36 1 -0.8504 -7.5533 -2.5452 37 1 -0.5996 -7.7224 -5.0208 38 1 0.1342 -6.7071 -7.1117 39 1 1.1465 -4.4695 -7.1407 40 1 1.4439 -3.2052 -5.0735 41 1 3.9378 -1.3421 -2.0686 42 1 4.0061 0.1488 -1.0992 43 1 5.0413 -1.7696 0.1014 44 1 3.4988 -2.6530 0.0022 45 1 3.9903 0.0004 1.4317 46 1 3.6519 -1.5744 2.1951 47 1 3.0035 -0.6974 4.7753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994500314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:43 Heat of formation + Delta-G solvation = 43.411800 kcal Electronic energy + Delta-G solvation = -30004.660091 eV Core-core repulsion = 26152.774796 eV Total energy + Delta-G solvation = -3851.885294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.96293 -39.52480 -37.59465 -37.46216 -34.05107 -32.96858 -32.39586 -31.76932 -31.29145 -30.09384 -29.01991 -26.36991 -25.14947 -24.87647 -23.60242 -22.99606 -21.92460 -20.96919 -20.48467 -18.90015 -18.08915 -17.52575 -17.45100 -16.46301 -15.96230 -15.46524 -15.04826 -15.02758 -14.92480 -14.42802 -14.19050 -13.96523 -13.83695 -13.53932 -13.34021 -13.08433 -13.02899 -12.81124 -12.59206 -12.30031 -12.05716 -11.88516 -11.55559 -11.32237 -11.26229 -11.00730 -10.72664 -10.65436 -10.53856 -10.17683 -10.13013 -10.03559 -9.94932 -9.70359 -9.34766 -9.26558 -9.24008 -8.67290 -8.51710 -8.20075 -6.72532 -5.84698 -3.30509 -0.03279 0.75528 1.56013 2.78626 3.24882 3.33278 3.40333 3.42507 3.42819 4.00276 4.18545 4.40121 4.42489 4.55888 4.57558 4.71113 4.93880 5.07596 5.09979 5.25708 5.29409 5.39645 5.47437 5.52879 5.59557 5.62045 5.70182 5.82565 5.90409 5.95262 6.07898 6.17741 6.22383 6.26822 6.32835 6.37219 6.45258 6.49188 6.61160 6.63835 6.71485 6.74855 6.89742 6.92135 7.04126 7.35119 7.63884 7.74687 7.77959 7.88342 8.37930 8.47192 9.14342 9.77171 10.33723 11.23006 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.003580 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.719494 B = 7818.958583 C = 9006.513747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.159 3.841 3 H 0.041 0.959 4 C 0.134 3.866 5 H 0.079 0.921 6 N -0.690 5.690 7 C 0.562 3.438 8 O -0.548 6.548 9 C -0.169 4.169 10 C 0.123 3.877 11 N -0.492 5.492 12 C 0.169 3.831 13 C -0.123 4.123 14 C -0.091 4.091 15 C -0.121 4.121 16 C -0.103 4.103 17 C -0.108 4.108 18 C 0.012 3.988 19 C -0.121 4.121 20 C -0.141 4.141 21 C 0.171 3.829 22 N -0.586 5.586 23 C -0.258 4.258 24 H 0.072 0.928 25 C 0.007 3.993 26 N -0.899 5.899 27 Si 0.899 3.101 28 H -0.276 1.276 29 H -0.289 1.289 30 H -0.291 1.291 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.408 0.592 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.166 0.834 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.018 0.982 46 H 0.088 0.912 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.922 -9.528 -16.823 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.052 3.948 3 H 0.059 0.941 4 C 0.028 3.972 5 H 0.097 0.903 6 N -0.341 5.341 7 C 0.348 3.652 8 O -0.429 6.429 9 C -0.174 4.174 10 C -0.021 4.021 11 N -0.199 5.199 12 C -0.003 4.003 13 C -0.125 4.125 14 C -0.111 4.111 15 C -0.139 4.139 16 C -0.122 4.122 17 C -0.125 4.125 18 C 0.006 3.994 19 C -0.159 4.159 20 C -0.180 4.180 21 C 0.045 3.955 22 N -0.310 5.310 23 C -0.387 4.387 24 H 0.089 0.911 25 C -0.192 4.192 26 N -0.543 5.543 27 Si 0.729 3.271 28 H -0.201 1.201 29 H -0.216 1.216 30 H -0.218 1.218 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.246 0.754 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.183 0.817 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.036 0.964 46 H 0.106 0.894 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.807 -9.325 -16.442 19.282 hybrid contribution -0.235 -0.331 0.412 0.579 sum -4.042 -9.656 -16.030 19.145 Atomic orbital electron populations 1.21795 0.95616 1.01448 1.00552 1.20727 0.93361 0.93979 0.86783 0.94131 1.21612 0.93011 0.82521 1.00065 0.90324 1.45956 1.60764 1.18740 1.08601 1.17787 0.78803 0.84424 0.84137 1.90580 1.51305 1.67003 1.33998 1.22023 1.04808 0.96509 0.94039 1.22934 0.91382 0.90092 0.97736 1.67139 1.14283 1.08277 1.30237 1.23292 0.92046 0.98524 0.86410 1.19027 1.02455 0.95137 0.95853 1.20933 0.99337 0.99566 0.91242 1.20963 0.98895 0.95799 0.98272 1.21164 0.97870 0.94454 0.98733 1.21847 0.97862 1.02231 0.90554 1.18930 0.95241 0.92325 0.92887 1.21772 0.95275 1.00571 0.98314 1.22149 0.99026 0.99502 0.97335 1.20825 0.83067 0.97252 0.94350 1.44190 1.03176 1.64757 1.18908 1.19200 0.94830 1.38345 0.86354 0.91079 1.25093 0.97683 0.99467 0.96984 1.70028 1.23196 1.44213 1.16850 0.86286 0.79743 0.79528 0.81588 1.20121 1.21566 1.21781 0.92876 0.91672 0.94139 0.75404 0.81992 0.81833 0.84903 0.85688 0.85531 0.81660 0.93075 0.91768 0.93393 0.92947 0.96374 0.89352 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.72 37.16 0.29 -2.13 16 2 C 0.16 3.04 3.20 -67.60 -0.22 2.83 16 3 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 4 C 0.13 2.31 2.33 -67.81 -0.16 2.16 16 5 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 6 N -0.69 -11.41 3.42 -54.76 -0.19 -11.60 16 7 C 0.56 9.29 7.74 -12.51 -0.10 9.20 16 8 O -0.55 -9.93 13.40 5.27 0.07 -9.86 16 9 C -0.17 -2.55 6.07 -102.66 -0.62 -3.17 16 10 C 0.12 1.78 10.71 -17.13 -0.18 1.60 16 11 N -0.49 -6.83 10.22 -12.58 -0.13 -6.96 16 12 C 0.17 1.89 11.00 -17.01 -0.19 1.70 16 13 C -0.12 -1.43 5.74 -106.89 -0.61 -2.04 16 14 C -0.09 -0.80 9.82 -39.49 -0.39 -1.19 16 15 C -0.12 -1.04 9.94 -39.91 -0.40 -1.44 16 16 C -0.10 -1.05 9.96 -39.84 -0.40 -1.44 16 17 C -0.11 -1.42 9.32 -39.69 -0.37 -1.79 16 18 C 0.01 0.16 5.91 -104.75 -0.62 -0.46 16 19 C -0.12 -2.09 5.58 -26.69 -0.15 -2.24 16 20 C -0.14 -2.63 5.93 -26.61 -0.16 -2.79 16 21 C 0.17 3.82 5.29 -3.71 -0.02 3.80 16 22 N -0.59 -13.16 2.65 -164.77 -0.44 -13.60 16 23 C -0.26 -6.35 8.61 -15.06 -0.13 -6.48 16 24 H 0.07 1.70 6.20 -52.48 -0.33 1.37 16 25 C 0.01 0.18 4.96 -17.43 -0.09 0.10 16 26 N -0.90 -24.81 11.14 55.49 0.62 -24.19 16 27 Si 0.90 20.70 29.58 -169.99 -5.03 15.67 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 30 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 31 H 0.05 0.93 6.38 -51.93 -0.33 0.60 16 32 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.41 6.89 5.88 -40.82 -0.24 6.65 16 35 H 0.16 2.28 6.44 -52.49 -0.34 1.95 16 36 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.17 2.43 5.24 -52.48 -0.28 2.16 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 2.24 6.06 -51.93 -0.31 1.92 16 47 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -29.33 369.89 -10.39 -39.72 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.37 Total: 9.01 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -4.50 Total: -3.78 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.13 Total: -56.34 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.33 -10.39 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994500314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.134 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds