Wall clock time and date at job start Tue Mar 31 2020 22:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.58362 * 2 1 4 4 C 1.53194 * 109.58622 * 239.71777 * 2 1 3 5 5 H 1.08999 * 109.49567 * 65.59790 * 4 2 1 6 6 N 1.46493 * 109.49753 * 305.52588 * 4 2 1 7 7 C 1.34782 * 120.00115 * 155.00019 * 6 4 2 8 8 O 1.21604 * 119.99503 * 0.02562 * 7 6 4 9 9 C 1.47439 * 120.00064 * 180.02562 * 7 6 4 10 10 C 1.38950 * 121.17167 * 359.97438 * 9 7 6 11 11 N 1.32197 * 121.31668 * 179.97438 * 10 9 7 12 12 C 1.31199 * 123.69822 * 359.97438 * 11 10 9 13 13 C 1.40384 * 120.91314 * 0.02562 * 12 11 10 14 14 C 1.40401 * 122.13890 * 180.02562 * 13 12 11 15 15 C 1.36227 * 119.47928 * 179.97438 * 14 13 12 16 16 C 1.39292 * 121.11225 * 0.02562 * 15 14 13 17 17 C 1.36440 * 120.94507 * 0.02562 * 16 15 14 18 18 C 1.39690 * 119.43666 * 359.95267 * 17 16 15 19 19 C 1.53042 * 109.31180 * 185.57593 * 4 2 1 20 20 C 1.53036 * 109.53922 * 61.36219 * 19 4 2 21 21 C 1.53191 * 109.31433 * 298.63868 * 20 19 4 22 22 N 1.46924 * 109.58758 * 120.42535 * 2 1 3 23 23 C 1.36934 * 120.63258 * 353.37640 * 22 2 1 24 24 H 1.08004 * 120.00025 * 29.00802 * 23 22 2 25 25 C 1.38811 * 120.00333 * 209.00892 * 23 22 2 26 26 N 1.31622 * 119.99601 * 15.04165 * 25 23 22 27 27 Si 1.86794 * 120.00389 * 195.04459 * 25 23 22 28 28 H 1.48508 * 109.46928 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47559 * 119.99609 * 27 25 23 30 30 H 1.48497 * 109.47187 * 240.00025 * 27 25 23 31 31 H 1.08997 * 109.46721 * 180.28186 * 1 2 3 32 32 H 1.09002 * 109.46924 * 300.28053 * 1 2 3 33 33 H 1.09001 * 109.47370 * 60.28473 * 1 2 3 34 34 H 0.96998 * 120.00052 * 335.00231 * 6 4 2 35 35 H 1.07996 * 119.34551 * 0.02562 * 10 9 7 36 36 H 1.07998 * 119.54466 * 180.02562 * 12 11 10 37 37 H 1.07991 * 120.25991 * 0.02562 * 14 13 12 38 38 H 1.08002 * 119.44590 * 180.02562 * 15 14 13 39 39 H 1.07997 * 119.52939 * 179.97438 * 16 15 14 40 40 H 1.08004 * 120.28459 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.46112 * 181.38931 * 19 4 2 42 42 H 1.08999 * 109.46097 * 301.34405 * 19 4 2 43 43 H 1.08999 * 109.50312 * 178.68268 * 20 19 4 44 44 H 1.09004 * 109.52403 * 58.60180 * 20 19 4 45 45 H 1.09003 * 109.58792 * 294.84339 * 21 20 19 46 46 H 1.09003 * 109.58745 * 174.42472 * 21 20 19 47 47 H 0.96999 * 119.99269 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2464 5 1 1.7656 -0.1643 -2.1371 6 7 1.4515 -2.0663 -1.3097 7 6 1.3284 -2.6933 -2.4965 8 8 1.7094 -2.1480 -3.5145 9 6 0.7320 -4.0401 -2.5603 10 6 0.2892 -4.6858 -1.4123 11 7 -0.2464 -5.8931 -1.4663 12 6 -0.4037 -6.5706 -2.5788 13 6 0.0006 -6.0358 -3.8122 14 6 -0.1560 -6.7378 -5.0180 15 6 0.2552 -6.1668 -6.1844 16 6 0.8292 -4.8977 -6.2013 17 6 0.9972 -4.1882 -5.0481 18 6 0.5862 -4.7439 -3.8341 19 6 3.5675 -0.8464 -1.1712 20 6 3.9570 -1.6656 0.0613 21 6 3.4651 -0.9485 1.3225 22 7 2.0226 -0.7010 1.1936 23 6 1.1538 -1.1154 2.1676 24 1 0.1359 -1.3692 1.9109 25 6 1.5813 -1.2092 3.4849 26 7 2.7046 -0.6315 3.8549 27 14 0.5627 -2.1555 4.7324 28 1 -0.6464 -2.7059 4.0687 29 1 1.3719 -3.2688 5.2900 30 1 0.1523 -1.2435 5.8302 31 1 -0.3632 -1.0276 0.0051 32 1 -0.3633 0.5182 0.8875 33 1 -0.3634 0.5094 -0.8925 34 1 1.1479 -2.5013 -0.4976 35 1 0.3837 -4.1910 -0.4570 36 1 -0.8504 -7.5533 -2.5452 37 1 -0.5996 -7.7224 -5.0208 38 1 0.1342 -6.7071 -7.1117 39 1 1.1465 -4.4695 -7.1407 40 1 1.4439 -3.2052 -5.0735 41 1 3.9378 -1.3421 -2.0686 42 1 4.0061 0.1488 -1.0992 43 1 5.0413 -1.7696 0.1014 44 1 3.4988 -2.6530 0.0022 45 1 3.9903 0.0004 1.4317 46 1 3.6519 -1.5744 2.1951 47 1 3.0035 -0.6974 4.7753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994500314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:42 Heat of formation + Delta-G solvation = 27.877414 kcal Electronic energy + Delta-G solvation = -30005.333712 eV Core-core repulsion = 26152.774796 eV Total energy + Delta-G solvation = -3852.558916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.96267 -40.80937 -39.07519 -38.33537 -35.66852 -34.23060 -33.74047 -33.34309 -32.15168 -31.45485 -30.26950 -27.92977 -26.87721 -25.98543 -24.50109 -24.10017 -23.36616 -22.45123 -21.83461 -20.40841 -19.08228 -18.62515 -18.43140 -18.16374 -17.13020 -16.86257 -16.44733 -16.34102 -15.95898 -15.70131 -15.58258 -15.33616 -15.00601 -14.81741 -14.58163 -14.56446 -14.32603 -14.20998 -13.67844 -13.54837 -13.16062 -12.97306 -12.93077 -12.87775 -12.74786 -12.45488 -12.39842 -12.30328 -12.17816 -11.90391 -11.70024 -11.39660 -11.10103 -11.06222 -10.99128 -10.50987 -10.37075 -10.08816 -10.00104 -9.12304 -8.62337 -7.82072 -5.28540 -0.94975 -0.12175 0.68869 1.47902 1.52230 1.59743 1.77605 2.15011 2.22828 2.53406 3.07595 3.24132 3.34532 3.51618 3.57588 3.67277 3.72178 3.89493 3.94893 4.04456 4.06644 4.19016 4.29070 4.33710 4.37786 4.51069 4.54864 4.62409 4.64426 4.76368 4.78364 4.92500 4.97522 5.01031 5.05773 5.08268 5.16436 5.21398 5.32401 5.42208 5.43037 5.50005 5.54546 5.57240 5.64794 5.74164 5.79959 5.93060 6.43944 6.55273 6.84028 7.17177 7.20208 7.89018 8.41748 9.24451 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.003580 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.719494 B = 7818.958583 C = 9006.513747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.157 3.843 3 H 0.036 0.964 4 C 0.143 3.857 5 H 0.085 0.915 6 N -0.690 5.690 7 C 0.564 3.436 8 O -0.568 6.568 9 C -0.197 4.197 10 C 0.123 3.877 11 N -0.522 5.522 12 C 0.186 3.814 13 C -0.138 4.138 14 C -0.075 4.075 15 C -0.122 4.122 16 C -0.088 4.088 17 C -0.146 4.146 18 C -0.008 4.008 19 C -0.114 4.114 20 C -0.127 4.127 21 C 0.179 3.821 22 N -0.597 5.597 23 C -0.247 4.247 24 H 0.080 0.920 25 C -0.047 4.047 26 N -0.935 5.935 27 Si 0.955 3.045 28 H -0.263 1.263 29 H -0.296 1.296 30 H -0.299 1.299 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.406 0.594 35 H 0.155 0.845 36 H 0.209 0.791 37 H 0.176 0.824 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.048 0.952 45 H -0.003 1.003 46 H 0.056 0.944 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.567 -12.324 -19.681 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.051 3.949 3 H 0.053 0.947 4 C 0.037 3.963 5 H 0.103 0.897 6 N -0.340 5.340 7 C 0.352 3.648 8 O -0.450 6.450 9 C -0.202 4.202 10 C -0.021 4.021 11 N -0.230 5.230 12 C 0.015 3.985 13 C -0.140 4.140 14 C -0.094 4.094 15 C -0.140 4.140 16 C -0.107 4.107 17 C -0.163 4.163 18 C -0.013 4.013 19 C -0.153 4.153 20 C -0.166 4.166 21 C 0.053 3.947 22 N -0.321 5.321 23 C -0.377 4.377 24 H 0.097 0.903 25 C -0.243 4.243 26 N -0.581 5.581 27 Si 0.785 3.215 28 H -0.187 1.187 29 H -0.223 1.223 30 H -0.227 1.227 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.243 0.757 35 H 0.173 0.827 36 H 0.225 0.775 37 H 0.194 0.806 38 H 0.182 0.818 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.015 0.985 46 H 0.075 0.925 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.471 -12.124 -19.334 23.468 hybrid contribution 0.236 0.453 1.098 1.211 sum -5.235 -11.671 -18.236 22.275 Atomic orbital electron populations 1.21712 0.94345 1.01565 1.00994 1.20846 0.94431 0.93566 0.86100 0.94683 1.21405 0.92923 0.82980 0.98980 0.89738 1.45896 1.61020 1.18398 1.08718 1.18040 0.78237 0.84983 0.83517 1.90572 1.52231 1.67723 1.34501 1.21884 1.07018 0.96102 0.95194 1.22855 0.91324 0.90631 0.97292 1.67198 1.15903 1.08244 1.31684 1.24042 0.89608 0.99349 0.85459 1.19329 1.02756 0.94528 0.97423 1.21448 0.97445 1.00695 0.89835 1.21409 0.97648 0.95020 0.99931 1.21522 0.95894 0.94876 0.98417 1.21698 1.00594 1.02245 0.91787 1.19160 0.96026 0.93583 0.92507 1.21715 0.95383 1.00667 0.97516 1.21957 0.99724 0.98882 0.96028 1.20590 0.83266 0.95877 0.94919 1.44350 1.02977 1.65317 1.19415 1.19513 0.95203 1.36376 0.86583 0.90279 1.25732 0.98820 1.00990 0.98740 1.70176 1.24975 1.46339 1.16613 0.85376 0.78794 0.77928 0.79398 1.18703 1.22311 1.22666 0.92864 0.93192 0.91698 0.75655 0.82741 0.77497 0.80647 0.81842 0.83399 0.84139 0.92618 0.91096 0.91997 0.93351 0.98517 0.92523 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 7.72 71.98 0.56 -3.95 16 2 C 0.16 6.06 3.20 44.98 0.14 6.20 16 3 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 4 C 0.14 4.95 2.33 45.07 0.10 5.06 16 5 H 0.08 2.87 7.58 -2.39 -0.02 2.85 16 6 N -0.69 -23.16 3.42 -445.42 -1.52 -24.68 16 7 C 0.56 19.10 7.74 86.67 0.67 19.77 16 8 O -0.57 -21.11 13.40 -4.04 -0.05 -21.16 16 9 C -0.20 -6.04 6.07 -18.60 -0.11 -6.16 16 10 C 0.12 3.60 10.71 84.81 0.91 4.51 16 11 N -0.52 -13.90 10.22 -193.73 -1.98 -15.88 16 12 C 0.19 3.62 11.00 85.31 0.94 4.56 16 13 C -0.14 -2.84 5.74 -21.33 -0.12 -2.96 16 14 C -0.07 -0.96 9.82 22.33 0.22 -0.74 16 15 C -0.12 -1.53 9.94 22.05 0.22 -1.31 16 16 C -0.09 -1.56 9.96 22.10 0.22 -1.34 16 17 C -0.15 -3.78 9.32 22.20 0.21 -3.57 16 18 C -0.01 -0.21 5.91 -19.94 -0.12 -0.32 16 19 C -0.11 -3.94 5.58 30.62 0.17 -3.77 16 20 C -0.13 -4.79 5.93 30.67 0.18 -4.61 16 21 C 0.18 8.31 5.29 86.36 0.46 8.76 16 22 N -0.60 -27.37 2.65 -675.22 -1.79 -29.16 16 23 C -0.25 -12.33 8.61 84.03 0.72 -11.61 16 24 H 0.08 3.78 6.20 -2.91 -0.02 3.76 16 25 C -0.05 -2.52 4.96 84.86 0.42 -2.10 16 26 N -0.93 -53.53 11.14 21.65 0.24 -53.29 16 27 Si 0.96 43.50 29.58 68.60 2.03 45.53 16 28 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 29 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 30 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 31 H 0.05 1.85 6.38 -2.39 -0.02 1.84 16 32 H 0.05 1.89 7.66 -2.39 -0.02 1.87 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.41 14.02 5.88 -92.71 -0.54 13.48 16 35 H 0.16 4.54 6.44 -2.91 -0.02 4.52 16 36 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.18 0.75 8.06 -2.92 -0.02 0.73 16 38 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 39 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.14 4.31 5.24 -2.91 -0.02 4.29 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.05 1.87 7.53 -2.39 -0.02 1.85 16 45 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.06 3.00 6.06 -2.39 -0.01 2.99 16 47 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -66.75 369.89 3.17 -63.58 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.46 Total: 28.65 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 5.79 Total: 6.41 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -5.05 Total: -123.01 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.75 3.17 -63.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994500314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.458 kcal (2) G-P(sol) polarization free energy of solvation -66.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds