Wall clock time and date at job start Tue Mar 31 2020 22:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.58456 * 2 1 4 4 C 1.53195 * 109.59052 * 239.71501 * 2 1 3 5 5 H 1.08998 * 109.49149 * 305.56322 * 4 2 1 6 6 N 1.46496 * 109.49383 * 65.62365 * 4 2 1 7 7 C 1.34780 * 119.99844 * 204.99846 * 6 4 2 8 8 O 1.21606 * 119.99698 * 0.02562 * 7 6 4 9 9 C 1.47441 * 119.99944 * 180.02562 * 7 6 4 10 10 C 1.38950 * 121.17346 * 359.97438 * 9 7 6 11 11 N 1.32194 * 121.31890 * 179.97438 * 10 9 7 12 12 C 1.31197 * 123.69488 * 359.77140 * 11 10 9 13 13 C 1.40385 * 120.91722 * 0.49793 * 12 11 10 14 14 C 1.40387 * 122.14339 * 179.78365 * 13 12 11 15 15 C 1.36237 * 119.48779 * 179.69975 * 14 13 12 16 16 C 1.39293 * 121.10099 * 0.04085 * 15 14 13 17 17 C 1.36434 * 120.95118 * 359.95464 * 16 15 14 18 18 C 1.39693 * 119.43397 * 0.02564 * 17 16 15 19 19 C 1.53033 * 109.31181 * 185.57806 * 4 2 1 20 20 C 1.53042 * 109.54145 * 61.36649 * 19 4 2 21 21 C 1.53197 * 109.31126 * 298.63225 * 20 19 4 22 22 N 1.46926 * 109.58659 * 120.42314 * 2 1 3 23 23 C 1.36943 * 120.63209 * 353.42181 * 22 2 1 24 24 H 1.07995 * 119.99778 * 29.00892 * 23 22 2 25 25 C 1.38814 * 120.00205 * 209.01209 * 23 22 2 26 26 N 1.31627 * 119.99796 * 15.00950 * 25 23 22 27 27 Si 1.86794 * 119.99999 * 195.01475 * 25 23 22 28 28 H 1.48495 * 109.47384 * 89.99633 * 27 25 23 29 29 H 1.48502 * 109.46882 * 210.00080 * 27 25 23 30 30 H 1.48502 * 109.47090 * 329.99498 * 27 25 23 31 31 H 1.08998 * 109.47243 * 180.28493 * 1 2 3 32 32 H 1.08996 * 109.47557 * 300.28326 * 1 2 3 33 33 H 1.09004 * 109.47341 * 60.29004 * 1 2 3 34 34 H 0.96995 * 120.00425 * 25.00444 * 6 4 2 35 35 H 1.07998 * 119.34027 * 0.02562 * 10 9 7 36 36 H 1.08006 * 119.54238 * 180.02562 * 12 11 10 37 37 H 1.08005 * 120.25835 * 359.69447 * 14 13 12 38 38 H 1.07998 * 119.44421 * 180.02562 * 15 14 13 39 39 H 1.07997 * 119.52267 * 179.97438 * 16 15 14 40 40 H 1.07994 * 120.28488 * 180.02562 * 17 16 15 41 41 H 1.09010 * 109.46041 * 181.38516 * 19 4 2 42 42 H 1.08999 * 109.46343 * 301.34273 * 19 4 2 43 43 H 1.08997 * 109.49759 * 178.67813 * 20 19 4 44 44 H 1.08998 * 109.52518 * 58.59760 * 20 19 4 45 45 H 1.09002 * 109.58276 * 294.84715 * 21 20 19 46 46 H 1.08993 * 109.58660 * 174.42261 * 21 20 19 47 47 H 0.96994 * 119.99725 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.6025 -1.7235 -1.2937 6 7 1.6705 0.0297 -2.4434 7 6 1.5473 -0.6004 -3.6284 8 8 1.7453 -1.7979 -3.7038 9 6 1.1724 0.1621 -4.8334 10 6 0.9400 1.5308 -4.7750 11 7 0.6042 2.2174 -5.8536 12 6 0.4685 1.6825 -7.0439 13 6 0.6684 0.3074 -7.2438 14 6 0.5258 -0.2925 -8.5050 15 6 0.7388 -1.6315 -8.6386 16 6 1.0953 -2.4161 -7.5443 17 6 1.2426 -1.8658 -6.3046 18 6 1.0320 -0.4956 -6.1323 19 6 3.5675 -0.8465 -1.1711 20 6 3.9569 -1.6657 0.0615 21 6 3.4650 -0.9485 1.3227 22 7 2.0225 -0.7010 1.1936 23 6 1.1535 -1.1162 2.1673 24 1 0.1360 -1.3706 1.9101 25 6 1.5806 -1.2100 3.4847 26 7 2.7037 -0.6321 3.8552 27 14 0.5616 -2.1564 4.7317 28 1 0.9959 -3.5763 4.7505 29 1 0.7520 -1.5625 6.0795 30 1 -0.8733 -2.0826 4.3566 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3634 0.5182 0.8874 33 1 -0.3634 0.5093 -0.8926 34 1 1.5123 0.9848 -2.3832 35 1 1.0364 2.0441 -3.8297 36 1 0.1917 2.3075 -7.8801 37 1 0.2492 0.3028 -9.3627 38 1 0.6293 -2.0922 -9.6092 39 1 1.2576 -3.4752 -7.6792 40 1 1.5196 -2.4841 -5.4637 41 1 3.9379 -1.3422 -2.0684 42 1 4.0061 0.1488 -1.0990 43 1 5.0412 -1.7697 0.1016 44 1 3.4988 -2.6530 0.0024 45 1 3.9903 0.0004 1.4318 46 1 3.6518 -1.5743 2.1953 47 1 3.0023 -0.6979 4.7757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994500316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:46 Heat of formation + Delta-G solvation = 23.904493 kcal Electronic energy + Delta-G solvation = -29242.232346 eV Core-core repulsion = 25389.501151 eV Total energy + Delta-G solvation = -3852.731195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.96154 -40.73812 -39.16292 -38.34127 -35.97493 -34.40546 -33.77737 -33.38726 -32.16360 -31.41118 -30.22011 -27.92455 -26.92775 -25.97048 -24.50289 -24.18252 -23.25752 -22.35297 -21.76390 -21.06156 -19.10334 -18.59933 -18.42589 -18.19949 -17.30523 -16.88306 -16.56744 -16.22664 -15.99130 -15.69370 -15.58270 -15.39402 -15.13345 -14.88731 -14.70046 -14.50136 -14.40916 -14.20107 -13.68167 -13.36578 -13.25489 -13.16425 -12.90589 -12.84086 -12.72626 -12.55647 -12.42936 -12.36368 -12.00953 -11.83994 -11.79984 -11.61758 -11.22382 -11.09969 -11.01711 -10.53630 -10.39212 -10.13225 -10.06548 -9.13149 -8.67015 -7.86176 -5.32489 -0.96322 -0.12588 0.67100 1.46155 1.48424 1.55846 1.75378 1.98873 2.20535 2.52570 3.06765 3.23005 3.29290 3.50700 3.56897 3.68460 3.71625 3.85839 3.88741 3.98205 4.04535 4.18877 4.27808 4.32217 4.34697 4.48472 4.50942 4.59557 4.62720 4.75357 4.77930 4.86191 4.89374 5.01191 5.04175 5.09756 5.11382 5.21023 5.26760 5.40853 5.42127 5.44621 5.52224 5.56770 5.60019 5.69683 5.76018 5.91185 6.40922 6.46751 6.82825 7.13642 7.16912 7.85445 8.36765 9.20718 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021517 B = 0.002561 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.005648 B =10931.671768 C =11174.351794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.165 3.835 3 H 0.036 0.964 4 C 0.149 3.851 5 H 0.061 0.939 6 N -0.700 5.700 7 C 0.565 3.435 8 O -0.570 6.570 9 C -0.200 4.200 10 C 0.130 3.870 11 N -0.519 5.519 12 C 0.191 3.809 13 C -0.138 4.138 14 C -0.073 4.073 15 C -0.125 4.125 16 C -0.090 4.090 17 C -0.150 4.150 18 C -0.009 4.009 19 C -0.109 4.109 20 C -0.129 4.129 21 C 0.175 3.825 22 N -0.600 5.600 23 C -0.253 4.253 24 H 0.072 0.928 25 C -0.048 4.048 26 N -0.933 5.933 27 Si 0.961 3.039 28 H -0.289 1.289 29 H -0.295 1.295 30 H -0.269 1.269 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.410 0.590 35 H 0.174 0.826 36 H 0.210 0.790 37 H 0.178 0.822 38 H 0.162 0.838 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.005 0.995 46 H 0.057 0.943 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 3.906 -27.720 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 H 0.053 0.947 4 C 0.042 3.958 5 H 0.079 0.921 6 N -0.351 5.351 7 C 0.354 3.646 8 O -0.451 6.451 9 C -0.205 4.205 10 C -0.014 4.014 11 N -0.227 5.227 12 C 0.020 3.980 13 C -0.140 4.140 14 C -0.093 4.093 15 C -0.142 4.142 16 C -0.109 4.109 17 C -0.168 4.168 18 C -0.014 4.014 19 C -0.148 4.148 20 C -0.169 4.169 21 C 0.050 3.950 22 N -0.324 5.324 23 C -0.383 4.383 24 H 0.090 0.910 25 C -0.244 4.244 26 N -0.580 5.580 27 Si 0.790 3.210 28 H -0.216 1.216 29 H -0.222 1.222 30 H -0.194 1.194 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.247 0.753 35 H 0.191 0.809 36 H 0.226 0.774 37 H 0.195 0.805 38 H 0.180 0.820 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.023 0.977 46 H 0.075 0.925 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.709 3.966 -27.299 27.834 hybrid contribution 0.019 -1.219 1.555 1.976 sum -3.690 2.746 -25.744 26.151 Atomic orbital electron populations 1.21741 0.94513 1.01099 1.01280 1.20707 0.94230 0.93556 0.85690 0.94692 1.21352 0.94989 0.95574 0.83868 0.92104 1.45829 1.69442 1.12666 1.07168 1.18150 0.76525 0.86674 0.83259 1.90627 1.52672 1.16177 1.85589 1.21810 1.09553 0.95814 0.93356 1.23026 0.91169 0.89134 0.98046 1.67242 1.14988 1.40687 0.99764 1.24038 0.87585 0.91208 0.95160 1.19319 1.04276 0.95659 0.94782 1.21472 0.96510 0.95654 0.95625 1.21396 0.98680 0.94248 0.99896 1.21504 0.95607 1.01645 0.92115 1.21680 1.00848 0.94393 0.99859 1.19184 0.96127 0.94499 0.91604 1.21687 0.95205 1.00414 0.97482 1.22019 1.00339 0.98731 0.95761 1.20658 0.83104 0.96210 0.95065 1.44269 1.03184 1.65739 1.19159 1.19460 0.95166 1.36910 0.86778 0.90998 1.25757 0.99053 1.00919 0.98658 1.70161 1.24901 1.46056 1.16840 0.85354 0.78995 0.78215 0.78430 1.21627 1.22166 1.19352 0.94065 0.93056 0.90876 0.75282 0.80881 0.77394 0.80465 0.82012 0.83873 0.84653 0.92719 0.91525 0.90913 0.93694 0.97724 0.92502 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 7.84 71.98 0.56 -4.13 16 2 C 0.17 6.53 3.03 44.97 0.14 6.66 16 3 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.15 5.31 2.00 45.07 0.09 5.40 16 5 H 0.06 2.55 7.58 -2.39 -0.02 2.54 16 6 N -0.70 -20.07 4.53 -445.43 -2.02 -22.08 16 7 C 0.57 17.59 7.74 86.67 0.67 18.26 16 8 O -0.57 -21.55 13.40 -4.05 -0.05 -21.61 16 9 C -0.20 -5.23 6.07 -18.59 -0.11 -5.34 16 10 C 0.13 2.80 10.71 84.81 0.91 3.70 16 11 N -0.52 -10.28 10.22 -193.72 -1.98 -12.26 16 12 C 0.19 2.80 11.00 85.31 0.94 3.74 16 13 C -0.14 -2.41 5.74 -21.34 -0.12 -2.53 16 14 C -0.07 -0.79 9.82 22.33 0.22 -0.57 16 15 C -0.12 -1.45 9.94 22.06 0.22 -1.23 16 16 C -0.09 -1.58 9.96 22.10 0.22 -1.36 16 17 C -0.15 -3.82 9.32 22.20 0.21 -3.61 16 18 C -0.01 -0.22 5.91 -19.94 -0.12 -0.34 16 19 C -0.11 -3.86 5.46 30.62 0.17 -3.70 16 20 C -0.13 -5.10 6.08 30.67 0.19 -4.91 16 21 C 0.18 8.46 5.29 86.36 0.46 8.91 16 22 N -0.60 -29.50 2.99 -675.22 -2.02 -31.52 16 23 C -0.25 -13.61 8.61 84.03 0.72 -12.89 16 24 H 0.07 3.78 6.20 -2.91 -0.02 3.76 16 25 C -0.05 -2.69 4.96 84.86 0.42 -2.27 16 26 N -0.93 -54.66 11.14 21.65 0.24 -54.42 16 27 Si 0.96 45.03 29.58 68.60 2.03 47.06 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 29 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 30 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 31 H 0.04 1.60 7.40 -2.39 -0.02 1.58 16 32 H 0.05 2.00 7.66 -2.39 -0.02 1.98 16 33 H 0.07 2.12 7.79 -2.38 -0.02 2.10 16 34 H 0.41 9.24 6.71 -92.71 -0.62 8.62 16 35 H 0.17 2.91 6.44 -2.91 -0.02 2.89 16 36 H 0.21 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 38 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 39 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.14 4.23 5.24 -2.91 -0.02 4.22 16 41 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 46 H 0.06 3.12 6.06 -2.39 -0.01 3.10 16 47 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -72.44 373.10 2.35 -70.08 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.38 Total: 20.94 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 5.78 Total: 3.80 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -5.78 Total: -120.28 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -72.44 2.35 -70.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994500316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.989 kcal (2) G-P(sol) polarization free energy of solvation -72.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds