Wall clock time and date at job start Tue Mar 31 2020 23:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46937 * 2 1 4 4 C 1.38145 * 125.60415 * 94.49368 * 3 2 1 5 5 C 1.47053 * 125.42810 * 359.96233 * 4 3 2 6 6 O 1.21641 * 120.00646 * 5.09357 * 5 4 3 7 7 N 1.34783 * 119.99831 * 184.81380 * 5 4 3 8 8 C 1.47875 * 126.94012 * 354.92166 * 7 5 4 9 9 C 1.56016 * 105.10152 * 181.98098 * 8 7 5 10 10 H 1.08996 * 116.24984 * 159.68576 * 9 8 7 11 11 C 1.57084 * 99.60974 * 32.80667 * 9 8 7 12 12 C 1.49281 * 126.94666 * 174.61075 * 7 5 4 13 13 H 1.09005 * 116.15459 * 15.86637 * 12 7 5 14 14 C 1.55480 * 104.35377 * 246.77846 * 12 7 5 15 15 N 1.47869 * 105.17444 * 288.90064 * 14 12 7 16 16 C 1.36934 * 126.94828 * 181.92259 * 15 14 12 17 17 H 1.08000 * 120.00222 * 185.00784 * 16 15 14 18 18 C 1.38811 * 119.99925 * 5.00441 * 16 15 14 19 19 N 1.31626 * 119.99929 * 354.82365 * 18 16 15 20 20 Si 1.86798 * 120.00221 * 174.82373 * 18 16 15 21 21 H 1.48498 * 109.46933 * 94.99922 * 20 18 16 22 22 H 1.48495 * 109.47187 * 215.00098 * 20 18 16 23 23 H 1.48505 * 109.46907 * 334.99947 * 20 18 16 24 24 C 1.35871 * 109.13367 * 179.70049 * 4 3 2 25 25 C 1.41586 * 107.72930 * 0.26419 * 24 4 3 26 26 C 1.40104 * 133.37821 * 180.02562 * 25 24 4 27 27 C 1.36432 * 119.82886 * 179.97438 * 26 25 24 28 28 C 1.38944 * 120.62047 * 0.02562 * 27 26 25 29 29 C 1.37678 * 120.64224 * 359.95793 * 28 27 26 30 30 C 1.37484 * 125.60264 * 274.65238 * 3 2 1 31 31 H 1.09001 * 109.46999 * 305.00104 * 1 2 3 32 32 H 1.09001 * 109.47302 * 64.99883 * 1 2 3 33 33 H 1.09005 * 109.47264 * 185.00001 * 1 2 3 34 34 H 1.08997 * 109.46811 * 240.00031 * 2 1 3 35 35 H 1.08996 * 109.47158 * 120.00103 * 2 1 3 36 36 H 1.08995 * 110.32170 * 300.88899 * 8 7 5 37 37 H 1.09002 * 110.31229 * 63.07702 * 8 7 5 38 38 H 1.09003 * 112.36496 * 64.26813 * 11 9 8 39 39 H 1.09000 * 112.37324 * 191.71435 * 11 9 8 40 40 H 1.09010 * 110.34914 * 169.94139 * 14 12 7 41 41 H 1.08997 * 110.30437 * 47.84341 * 14 12 7 42 42 H 0.96994 * 119.99722 * 179.97438 * 19 18 16 43 43 H 1.08006 * 126.13054 * 180.30029 * 24 4 3 44 44 H 1.07995 * 120.08127 * 359.97376 * 26 25 24 45 45 H 1.08000 * 119.69179 * 179.97438 * 27 26 25 46 46 H 1.07989 * 119.68098 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.09136 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3694 2.1102 1.1198 5 6 2.3120 1.6235 2.5062 6 8 2.0199 0.4646 2.7325 7 7 2.5887 2.4602 3.5261 8 6 3.0646 3.8567 3.4259 9 6 3.2670 4.3239 4.9006 10 1 3.9239 5.1809 5.0489 11 6 3.7062 2.9623 5.5491 12 6 2.4705 2.1664 4.9849 13 1 2.3876 1.1144 5.2581 14 6 1.3194 3.0909 5.4723 15 7 1.8788 4.4591 5.4330 16 6 1.2505 5.6163 5.8088 17 1 1.7371 6.5686 5.6577 18 6 -0.0118 5.5655 6.3840 19 7 -0.6477 4.4166 6.4752 20 14 -0.8082 7.1274 7.0285 21 1 -1.6957 7.6981 5.9836 22 1 -1.6082 6.8120 8.2391 23 1 0.2463 8.1140 7.3752 24 6 2.7815 3.3465 0.7352 25 6 2.6856 3.4134 -0.6758 26 6 2.9672 4.4161 -1.6130 27 6 2.7691 4.1781 -2.9417 28 6 2.2892 2.9489 -3.3766 29 6 2.0054 1.9476 -2.4753 30 6 2.1996 2.1661 -1.1142 31 1 -0.3633 0.5895 0.8418 32 1 -0.3634 0.4343 -0.9314 33 1 -0.3634 -1.0238 0.0896 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 4.0090 3.8967 2.8832 37 1 2.3166 4.4767 2.9317 38 1 4.6538 2.5997 5.1507 39 1 3.7097 3.0036 6.6384 40 1 1.0287 2.8300 6.4900 41 1 0.4626 3.0130 4.8030 42 1 -1.5296 4.3810 6.8775 43 1 3.1218 4.1362 1.3887 44 1 3.3402 5.3748 -1.2843 45 1 2.9865 4.9528 -3.6621 46 1 2.1376 2.7770 -4.4319 47 1 1.6332 0.9953 -2.8232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032798714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:55 Heat of formation + Delta-G solvation = 98.270479 kcal Electronic energy + Delta-G solvation = -30028.901275 eV Core-core repulsion = 26179.394831 eV Total energy + Delta-G solvation = -3849.506444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.64960 -39.98782 -37.99687 -36.73767 -34.38042 -33.47850 -31.67055 -31.07902 -29.64642 -29.04727 -28.61788 -28.09212 -25.38396 -24.42984 -23.77470 -22.85942 -21.59739 -20.85865 -20.20889 -19.76831 -18.74720 -17.28906 -16.90549 -16.45978 -16.27640 -15.67537 -15.36475 -15.03693 -14.60765 -14.44953 -14.20997 -14.01105 -13.86229 -13.53530 -13.16969 -13.15216 -13.05086 -12.66690 -12.22763 -11.98923 -11.95073 -11.78359 -11.68083 -11.34496 -11.21927 -11.20380 -11.08016 -10.95275 -10.88806 -10.69304 -10.62814 -10.25907 -10.11384 -9.76135 -9.67991 -9.62281 -8.71832 -8.27708 -8.02343 -7.65520 -6.96412 -5.80705 -3.14761 0.83864 1.63210 2.23389 2.54375 3.35854 3.41079 3.41818 3.43626 3.57717 3.91514 4.39454 4.59196 4.61628 4.71646 4.95771 5.02443 5.06614 5.07503 5.11976 5.29117 5.30850 5.34398 5.40705 5.49946 5.55368 5.57941 5.62348 5.72178 5.73362 5.82709 5.84406 5.94153 6.01740 6.09877 6.11632 6.21733 6.35058 6.39323 6.41837 6.54547 6.57873 6.60551 6.74241 6.76078 7.12294 7.28506 7.38534 7.41885 7.67772 7.92528 8.06310 8.41067 9.06444 9.67840 10.36273 11.31627 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012834 B = 0.003469 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.135108 B = 8070.230962 C = 8732.160049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.448 5.448 4 C 0.038 3.962 5 C 0.593 3.407 6 O -0.557 6.557 7 N -0.589 5.589 8 C 0.075 3.925 9 C 0.140 3.860 10 H 0.110 0.890 11 C -0.150 4.150 12 C 0.102 3.898 13 H 0.116 0.884 14 C 0.172 3.828 15 N -0.597 5.597 16 C -0.233 4.233 17 H 0.082 0.918 18 C -0.004 4.004 19 N -0.918 5.918 20 Si 0.911 3.089 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.280 1.280 24 C -0.156 4.156 25 C -0.116 4.116 26 C -0.061 4.061 27 C -0.154 4.154 28 C -0.097 4.097 29 C -0.129 4.129 30 C 0.106 3.894 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.254 0.746 43 H 0.165 0.835 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.649 -4.871 -15.142 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.023 4.023 3 N -0.129 5.129 4 C -0.072 4.072 5 C 0.382 3.618 6 O -0.438 6.438 7 N -0.321 5.321 8 C -0.050 4.050 9 C 0.031 3.969 10 H 0.127 0.873 11 C -0.189 4.189 12 C 0.000 4.000 13 H 0.134 0.866 14 C 0.047 3.953 15 N -0.321 5.321 16 C -0.360 4.360 17 H 0.099 0.901 18 C -0.201 4.201 19 N -0.565 5.565 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.182 4.182 25 C -0.120 4.120 26 C -0.080 4.080 27 C -0.174 4.174 28 C -0.116 4.116 29 C -0.150 4.150 30 C -0.003 4.003 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.182 0.818 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.081 -5.813 -14.887 17.908 hybrid contribution -0.759 0.766 0.150 1.088 sum 7.322 -5.047 -14.737 17.212 Atomic orbital electron populations 1.22097 0.94529 1.02911 1.02667 1.22024 0.95609 0.79636 1.05014 1.44070 1.53532 1.11908 1.03412 1.19894 1.06863 0.92603 0.87814 1.16669 0.77912 0.84673 0.82565 1.90706 1.51272 1.16999 1.84806 1.48868 1.63470 1.13546 1.06195 1.23699 0.98098 0.81813 1.01426 1.23234 0.89012 0.95210 0.89453 0.87273 1.24215 0.96132 0.97492 1.01097 1.24398 0.98466 0.99949 0.77157 0.86592 1.21863 0.91176 0.82258 1.00032 1.45245 1.08484 1.03377 1.74966 1.19046 0.98881 0.84480 1.33640 0.90063 1.24832 0.97265 0.97078 1.00901 1.69919 1.14124 1.23353 1.49076 0.86119 0.79182 0.82171 0.78382 1.21675 1.21655 1.20514 1.21662 1.05826 0.96709 0.94043 1.18241 1.05906 0.94198 0.93672 1.20397 0.97871 0.97599 0.92123 1.20570 1.03709 0.97544 0.95530 1.20794 0.99106 0.93042 0.98695 1.20002 1.05533 1.00225 0.89209 1.18381 1.02275 0.91229 0.88453 0.91614 0.92566 0.90825 0.90203 0.86675 0.91965 0.90198 0.91456 0.89544 0.92059 0.93719 0.93583 0.81822 0.85869 0.86175 0.85948 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.10 1.28 6.38 -4.04 -0.03 1.26 16 3 N -0.45 -6.89 2.82 -110.36 -0.31 -7.21 16 4 C 0.04 0.65 6.80 -82.29 -0.56 0.09 16 5 C 0.59 11.16 7.86 -12.68 -0.10 11.07 16 6 O -0.56 -11.35 14.79 5.24 0.08 -11.28 16 7 N -0.59 -10.78 2.95 -158.27 -0.47 -11.25 16 8 C 0.07 1.24 4.35 -1.67 -0.01 1.23 16 9 C 0.14 2.48 5.53 -62.55 -0.35 2.14 16 10 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 11 C -0.15 -2.43 6.83 -22.10 -0.15 -2.58 16 12 C 0.10 1.92 5.24 -62.65 -0.33 1.59 16 13 H 0.12 2.10 8.03 -51.93 -0.42 1.69 16 14 C 0.17 4.01 4.76 -1.97 -0.01 4.00 16 15 N -0.60 -13.92 3.02 -156.68 -0.47 -14.39 16 16 C -0.23 -6.05 10.37 -15.06 -0.16 -6.20 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 19 N -0.92 -26.35 10.58 55.49 0.59 -25.77 16 20 Si 0.91 21.43 29.56 -169.99 -5.02 16.40 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 C -0.16 -2.44 9.44 -39.15 -0.37 -2.81 16 25 C -0.12 -1.70 6.16 -106.93 -0.66 -2.36 16 26 C -0.06 -0.75 10.06 -39.53 -0.40 -1.15 16 27 C -0.15 -1.64 9.96 -39.97 -0.40 -2.04 16 28 C -0.10 -1.01 10.02 -39.52 -0.40 -1.40 16 29 C -0.13 -1.54 10.00 -39.42 -0.39 -1.93 16 30 C 0.11 1.54 6.81 -83.98 -0.57 0.97 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.12 1.70 5.90 -51.93 -0.31 1.39 16 36 H 0.06 0.85 7.04 -51.93 -0.37 0.49 16 37 H 0.08 1.46 7.04 -51.93 -0.37 1.10 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.06 1.58 7.33 -51.92 -0.38 1.20 16 41 H 0.04 1.21 7.80 -51.93 -0.40 0.81 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.16 2.33 4.30 -52.48 -0.23 2.11 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -31.42 374.15 -11.22 -42.64 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.66 Total: 5.21 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -4.58 Total: 0.00 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.66 Total: -58.61 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.42 -11.22 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032798714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.909 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds