Wall clock time and date at job start Tue Mar 31 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.49612 * 2 1 4 4 C 1.53190 * 109.52365 * 120.07397 * 2 1 3 5 5 N 1.46925 * 108.77713 * 174.60084 * 4 2 1 6 6 C 1.34772 * 120.62877 * 126.41915 * 5 4 2 7 7 O 1.21607 * 120.00175 * 354.19250 * 6 5 4 8 8 C 1.47440 * 120.00005 * 174.20231 * 6 5 4 9 9 C 1.38747 * 120.32896 * 306.15067 * 8 6 5 10 10 C 1.38868 * 120.71972 * 179.97438 * 9 8 6 11 11 C 1.36349 * 121.06449 * 359.97438 * 10 9 8 12 12 C 1.40440 * 120.08229 * 0.02562 * 11 10 9 13 13 C 1.40805 * 121.27001 * 179.97438 * 12 11 10 14 14 C 1.36628 * 118.15840 * 179.97438 * 13 12 11 15 15 C 1.39236 * 119.90827 * 0.02562 * 14 13 12 16 16 N 1.31230 * 121.69250 * 0.02562 * 15 14 13 17 17 C 1.33347 * 121.35657 * 359.66118 * 16 15 14 18 18 C 1.46923 * 118.73946 * 306.39564 * 5 4 2 19 19 C 1.53190 * 108.77424 * 53.60603 * 18 5 4 20 20 C 1.53036 * 109.49745 * 239.93199 * 2 1 3 21 21 H 1.08999 * 109.45911 * 298.66723 * 20 2 1 22 22 N 1.46493 * 109.46080 * 58.63406 * 20 2 1 23 23 C 1.36940 * 119.99747 * 205.06875 * 22 20 2 24 24 H 1.07997 * 120.00154 * 0.02562 * 23 22 20 25 25 C 1.38814 * 119.99767 * 179.97438 * 23 22 20 26 26 N 1.31626 * 119.99918 * 179.97438 * 25 23 22 27 27 Si 1.86795 * 120.00155 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.47160 * 90.00431 * 27 25 23 29 29 H 1.48506 * 109.47200 * 209.99852 * 27 25 23 30 30 H 1.48495 * 109.47472 * 330.00240 * 27 25 23 31 31 H 1.08994 * 109.46919 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47224 * 300.07223 * 1 2 3 33 33 H 1.09002 * 109.46779 * 60.06633 * 1 2 3 34 34 H 1.09001 * 109.59031 * 294.39198 * 4 2 1 35 35 H 1.09009 * 109.58469 * 54.67432 * 4 2 1 36 36 H 1.08003 * 119.63606 * 359.97438 * 9 8 6 37 37 H 1.07998 * 119.46365 * 180.02562 * 10 9 8 38 38 H 1.07995 * 119.95654 * 180.02562 * 11 10 9 39 39 H 1.07999 * 120.91738 * 0.02562 * 13 12 11 40 40 H 1.07996 * 120.05074 * 179.97438 * 14 13 12 41 41 H 1.08005 * 119.15232 * 180.02562 * 15 14 13 42 42 H 1.08997 * 109.58771 * 293.82179 * 18 5 4 43 43 H 1.09004 * 109.59002 * 173.39360 * 18 5 4 44 44 H 1.09009 * 109.49626 * 185.41335 * 19 18 5 45 45 H 1.09001 * 109.49712 * 65.31904 * 19 18 5 46 46 H 0.97001 * 120.00749 * 25.06586 * 22 20 2 47 47 H 0.96999 * 120.00019 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7235 1.2495 5 7 3.5053 -0.8282 1.1691 6 6 4.2818 -0.3852 2.1776 7 8 3.7813 0.2015 3.1179 8 6 5.7382 -0.6118 2.1409 9 6 6.2439 -1.8917 1.9643 10 6 7.6142 -2.1143 1.9279 11 6 8.4980 -1.0850 2.0638 12 6 8.0290 0.2264 2.2445 13 6 8.9193 1.3078 2.3880 14 6 8.3938 2.5571 2.5600 15 6 7.0127 2.7313 2.5898 16 7 6.1872 1.7199 2.4566 17 6 6.6359 0.4767 2.2795 18 6 4.1059 -1.4255 -0.0314 19 6 3.5708 -0.6940 -1.2664 20 6 2.0408 -0.7228 -1.2485 21 1 1.6973 -1.7571 -1.2353 22 7 1.5260 -0.0528 -2.4452 23 6 1.3946 -0.7495 -3.6168 24 1 1.6701 -1.7930 -3.6584 25 6 0.9063 -0.1149 -4.7506 26 7 0.7804 -0.7844 -5.8769 27 14 0.4277 1.6893 -4.6781 28 1 1.6050 2.5278 -5.0190 29 1 -0.6644 1.9512 -5.6498 30 1 -0.0379 2.0233 -3.3082 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5150 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.7644 -0.1578 2.1389 35 1 1.6044 -1.7207 1.2993 36 1 5.5644 -2.7239 1.8538 37 1 7.9857 -3.1188 1.7889 38 1 9.5600 -1.2784 2.0323 39 1 9.9880 1.1539 2.3619 40 1 9.0486 3.4084 2.6736 41 1 6.6105 3.7244 2.7261 42 1 3.8386 -2.4807 -0.0874 43 1 5.1902 -1.3229 0.0128 44 1 3.9334 -1.1886 -2.1677 45 1 3.9155 0.3400 -1.2546 46 1 1.2781 0.8842 -2.4078 47 1 0.4389 -0.3410 -6.6691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036099128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:15 Heat of formation + Delta-G solvation = 15.923932 kcal Electronic energy + Delta-G solvation = -29492.501333 eV Core-core repulsion = 25639.424075 eV Total energy + Delta-G solvation = -3853.077258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.10654 -40.95864 -39.05214 -37.93247 -36.27193 -34.75683 -34.21144 -33.23291 -31.64951 -31.54243 -31.12880 -27.78847 -26.88960 -25.47707 -24.53965 -24.48604 -23.49538 -23.03399 -21.45947 -20.45917 -19.47943 -19.33020 -18.38180 -17.88588 -17.53483 -16.86644 -16.67675 -16.14340 -16.06172 -15.62490 -15.35911 -15.31498 -15.11992 -14.92277 -14.83342 -14.50150 -14.29273 -14.04535 -13.81366 -13.78924 -13.45985 -13.14633 -13.05508 -12.97821 -12.86821 -12.63696 -12.47789 -12.28655 -12.10243 -12.06675 -11.90658 -11.77776 -11.53348 -11.22187 -11.10285 -10.90539 -10.34817 -9.80097 -9.71722 -9.32476 -9.21538 -8.01197 -5.32803 -0.75844 -0.17833 0.81128 1.36589 1.37191 1.44558 1.60363 1.88049 2.09652 2.47714 3.08960 3.27037 3.30687 3.36404 3.52074 3.72709 3.79483 3.82585 3.94012 3.97069 4.00371 4.03733 4.18353 4.24222 4.31352 4.39166 4.43603 4.51481 4.57878 4.65516 4.73725 4.75064 4.79187 4.89514 4.91250 4.97797 5.00436 5.07953 5.13691 5.23165 5.24071 5.33715 5.37478 5.44413 5.55242 5.60046 5.79204 5.83800 6.23191 6.32998 6.98379 7.08432 7.10159 7.85368 8.03974 9.20274 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.003065 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.148716 B = 9134.211914 C = 9366.329139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 H 0.051 0.949 4 C 0.127 3.873 5 N -0.603 5.603 6 C 0.568 3.432 7 O -0.569 6.569 8 C -0.141 4.141 9 C -0.053 4.053 10 C -0.124 4.124 11 C -0.063 4.063 12 C -0.128 4.128 13 C -0.048 4.048 14 C -0.177 4.177 15 C 0.121 3.879 16 N -0.519 5.519 17 C 0.128 3.872 18 C 0.115 3.885 19 C -0.143 4.143 20 C 0.185 3.815 21 H 0.057 0.943 22 N -0.748 5.748 23 C -0.217 4.217 24 H 0.065 0.935 25 C -0.060 4.060 26 N -0.982 5.982 27 Si 0.943 3.057 28 H -0.285 1.285 29 H -0.296 1.296 30 H -0.257 1.257 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.153 0.847 37 H 0.173 0.827 38 H 0.175 0.825 39 H 0.183 0.817 40 H 0.175 0.825 41 H 0.171 0.829 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.040 0.960 46 H 0.361 0.639 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.428 -0.666 20.594 29.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.124 4.124 3 H 0.070 0.930 4 C 0.005 3.995 5 N -0.335 5.335 6 C 0.357 3.643 7 O -0.449 6.449 8 C -0.145 4.145 9 C -0.074 4.074 10 C -0.142 4.142 11 C -0.081 4.081 12 C -0.130 4.130 13 C -0.074 4.074 14 C -0.197 4.197 15 C -0.050 4.050 16 N -0.228 5.228 17 C 0.006 3.994 18 C -0.007 4.007 19 C -0.183 4.183 20 C 0.077 3.923 21 H 0.075 0.925 22 N -0.390 5.390 23 C -0.348 4.348 24 H 0.083 0.917 25 C -0.251 4.251 26 N -0.633 5.633 27 Si 0.772 3.228 28 H -0.212 1.212 29 H -0.223 1.223 30 H -0.182 1.182 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.170 0.830 37 H 0.191 0.809 38 H 0.192 0.808 39 H 0.200 0.800 40 H 0.192 0.808 41 H 0.188 0.812 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.059 0.941 46 H 0.193 0.807 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 19.188 -0.511 20.956 28.418 hybrid contribution -0.076 1.383 -0.747 1.574 sum 19.112 0.872 20.209 27.829 Atomic orbital electron populations 1.21627 0.93430 1.02587 1.01435 1.21653 0.97068 0.99088 0.94574 0.92996 1.21623 0.78617 1.01626 0.97681 1.48122 1.06926 1.60430 1.17973 1.18384 0.86818 0.77159 0.81901 1.90725 1.75597 1.42122 1.36409 1.19758 0.91809 0.94721 1.08226 1.21723 0.97738 0.94530 0.93368 1.21267 0.91412 1.01749 0.99750 1.21646 1.02355 0.89774 0.94355 1.19164 0.92656 0.97313 1.03834 1.22007 1.01479 0.91024 0.92855 1.22268 0.95970 0.99940 1.01483 1.23534 0.91423 0.98033 0.91998 1.68009 1.41136 1.00093 1.13556 1.18864 0.91633 0.90893 0.97984 1.21939 0.98730 0.97836 0.82204 1.22450 0.98377 0.99864 0.97642 1.20382 0.91439 0.95785 0.84664 0.92495 1.42817 1.78334 1.10134 1.07747 1.19029 1.33736 0.94833 0.87247 0.91674 1.25332 1.02731 1.01588 0.95467 1.69854 1.54506 1.37528 1.01458 0.85583 0.77576 0.81869 0.77792 1.21165 1.22321 1.18168 0.91738 0.91483 0.93752 0.90004 0.89044 0.82971 0.80935 0.80775 0.79998 0.80803 0.81152 0.88611 0.88876 0.91331 0.94150 0.80671 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.03 71.98 0.65 -3.44 16 2 C -0.10 -3.38 2.46 -10.72 -0.03 -3.41 16 3 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.13 3.67 5.73 86.36 0.49 4.16 16 5 N -0.60 -17.61 2.97 -822.77 -2.45 -20.05 16 6 C 0.57 18.72 6.83 86.67 0.59 19.31 16 7 O -0.57 -23.11 16.18 -4.05 -0.07 -23.18 16 8 C -0.14 -3.85 4.64 -19.86 -0.09 -3.94 16 9 C -0.05 -0.97 7.74 22.54 0.17 -0.79 16 10 C -0.12 -1.47 9.93 21.98 0.22 -1.25 16 11 C -0.06 -0.74 9.75 22.37 0.22 -0.52 16 12 C -0.13 -2.39 5.74 -21.29 -0.12 -2.51 16 13 C -0.05 -0.62 9.90 22.52 0.22 -0.39 16 14 C -0.18 -2.46 10.03 22.13 0.22 -2.24 16 15 C 0.12 2.65 11.15 85.02 0.95 3.60 16 16 N -0.52 -16.09 9.54 -187.96 -1.79 -17.89 16 17 C 0.13 3.56 6.60 40.61 0.27 3.83 16 18 C 0.12 2.97 5.56 86.36 0.48 3.45 16 19 C -0.14 -4.81 5.66 30.67 0.17 -4.63 16 20 C 0.19 6.86 2.19 45.02 0.10 6.96 16 21 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 22 N -0.75 -34.57 4.21 -322.83 -1.36 -35.93 16 23 C -0.22 -12.07 10.41 84.03 0.87 -11.20 16 24 H 0.07 3.90 8.06 -2.91 -0.02 3.87 16 25 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 26 N -0.98 -62.53 13.97 21.65 0.30 -62.23 16 27 Si 0.94 46.34 27.73 68.60 1.90 48.24 16 28 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 29 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 30 H -0.26 -11.62 6.52 99.48 0.65 -10.97 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.04 1.56 7.36 -2.39 -0.02 1.55 16 34 H 0.08 2.54 7.00 -2.39 -0.02 2.53 16 35 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.15 2.14 7.73 -2.91 -0.02 2.12 16 37 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 38 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 39 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 40 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 42 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.09 2.17 5.39 -2.38 -0.01 2.16 16 44 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.36 16.69 5.37 -92.71 -0.50 16.20 16 47 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -83.28 378.75 2.83 -80.44 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.43 Total: 26.64 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 5.86 Total: 3.96 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -5.30 Total: -136.10 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.07 Total: -23.18 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.90 Total: 48.24 kcal Total: -83.28 2.83 -80.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036099128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.369 kcal (2) G-P(sol) polarization free energy of solvation -83.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds