Wall clock time and date at job start Tue Mar 31 2020 22:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.49955 * 2 1 4 4 C 1.53200 * 109.49890 * 239.90455 * 2 1 3 5 5 N 1.46922 * 108.77268 * 185.41237 * 4 2 1 6 6 C 1.34783 * 120.63093 * 233.62685 * 5 4 2 7 7 O 1.21548 * 119.99717 * 356.01816 * 6 5 4 8 8 C 1.47896 * 120.00370 * 176.01506 * 6 5 4 9 9 C 1.38889 * 121.11052 * 53.52399 * 8 6 5 10 10 C 1.39278 * 119.57936 * 179.68908 * 9 8 6 11 11 N 1.30992 * 121.88164 * 0.65757 * 10 9 8 12 12 C 1.33532 * 121.82594 * 359.64545 * 11 10 9 13 13 C 1.40716 * 120.96736 * 180.02562 * 12 11 10 14 14 C 1.36056 * 119.74119 * 179.97438 * 13 12 11 15 15 C 1.39355 * 121.05409 * 359.96704 * 14 13 12 16 16 C 1.36244 * 120.83920 * 0.02562 * 15 14 13 17 17 C 1.40098 * 119.64261 * 0.02562 * 16 15 14 18 18 C 1.46988 * 118.75646 * 53.61334 * 5 4 2 19 19 C 1.53186 * 108.73957 * 306.40498 * 18 5 4 20 20 C 1.53036 * 109.33924 * 54.62136 * 19 18 5 21 21 H 1.09003 * 109.45927 * 58.64184 * 20 19 18 22 22 N 1.46502 * 109.45995 * 178.61549 * 20 19 18 23 23 C 1.36939 * 120.00083 * 274.99663 * 22 20 19 24 24 H 1.08003 * 119.99914 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00175 * 179.97438 * 23 22 20 26 26 N 1.31614 * 120.00151 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99950 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47014 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46663 * 120.00246 * 27 25 23 30 30 H 1.48495 * 109.47089 * 240.00296 * 27 25 23 31 31 H 1.08999 * 109.47425 * 299.92992 * 1 2 3 32 32 H 1.08998 * 109.46964 * 59.93473 * 1 2 3 33 33 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.58579 * 305.20224 * 4 2 1 35 35 H 1.08996 * 109.58382 * 65.48434 * 4 2 1 36 36 H 1.08002 * 120.21133 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.05528 * 180.33113 * 10 9 8 38 38 H 1.08002 * 120.12933 * 0.02562 * 13 12 11 39 39 H 1.08004 * 119.47213 * 179.97438 * 14 13 12 40 40 H 1.07999 * 119.57736 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.17591 * 179.97438 * 16 15 14 42 42 H 1.09004 * 109.63205 * 186.61189 * 18 5 4 43 43 H 1.09005 * 109.58750 * 66.16733 * 18 5 4 44 44 H 1.09005 * 109.49674 * 294.65613 * 19 18 5 45 45 H 1.09005 * 109.49939 * 174.59229 * 19 18 5 46 46 H 0.96999 * 120.00400 * 95.00266 * 22 20 19 47 47 H 0.97001 * 120.00008 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 -1.2495 5 7 3.5046 -0.8294 -1.1693 6 6 4.2812 -0.3861 -2.1778 7 8 3.7711 0.0396 -3.1956 8 6 5.7539 -0.4177 -2.0460 9 6 6.4194 -1.5896 -1.7100 10 6 7.8079 -1.5847 -1.6008 11 7 8.5132 -0.4979 -1.7941 12 6 7.9409 0.6654 -2.1136 13 6 8.7163 1.8219 -2.3177 14 6 8.1071 2.9942 -2.6430 15 6 6.7224 3.0712 -2.7792 16 6 5.9398 1.9722 -2.5894 17 6 6.5332 0.7487 -2.2523 18 6 4.1059 -1.4269 0.0315 19 6 3.5708 -0.6948 1.2661 20 6 2.0408 -0.7228 1.2485 21 1 1.6967 -1.7570 1.2357 22 7 1.5266 -0.0521 2.4451 23 6 1.3951 -0.7482 3.6170 24 1 1.6709 -1.7915 3.6593 25 6 0.9083 -0.1125 4.7510 26 7 0.5726 1.1590 4.6997 27 14 0.7296 -1.0620 6.3498 28 1 1.1724 -2.4645 6.1448 29 1 1.5675 -0.4270 7.3987 30 1 -0.6925 -1.0489 6.7770 31 1 -0.3634 0.5127 0.8906 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6053 -1.7219 -1.2976 35 1 1.7616 -0.1598 -2.1390 36 1 5.8641 -2.5002 -1.5399 37 1 8.3171 -2.5019 -1.3444 38 1 9.7908 1.7788 -2.2173 39 1 8.7064 3.8792 -2.7982 40 1 6.2639 4.0139 -3.0386 41 1 4.8676 2.0441 -2.6973 42 1 5.1903 -1.3249 -0.0125 43 1 3.8382 -2.4820 0.0878 44 1 3.9159 0.3391 1.2540 45 1 3.9334 -1.1887 2.1676 46 1 1.2791 0.8850 2.4073 47 1 0.2321 1.6031 5.4920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036111932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:37 Heat of formation + Delta-G solvation = 35.714386 kcal Electronic energy + Delta-G solvation = -29464.513130 eV Core-core repulsion = 25612.294051 eV Total energy + Delta-G solvation = -3852.219079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.39694 -39.86587 -37.75678 -37.32377 -34.78322 -33.82995 -32.72823 -31.55286 -30.83259 -30.30726 -29.38891 -26.81435 -25.54675 -24.49183 -23.87523 -23.10413 -22.45095 -21.72437 -20.13387 -19.31537 -18.48337 -17.68050 -17.26647 -17.09046 -16.39999 -15.67269 -15.24904 -14.98815 -14.82286 -14.49512 -14.44734 -14.16985 -14.09584 -13.81668 -13.60571 -13.48003 -13.37880 -12.84753 -12.50515 -12.39606 -12.06550 -11.86518 -11.79214 -11.66600 -11.59455 -11.26212 -10.99549 -10.86846 -10.75360 -10.70174 -10.48345 -10.31955 -10.20606 -9.80856 -9.69365 -9.57697 -9.04648 -8.94272 -8.65196 -8.46657 -7.01765 -5.82352 -3.11344 -0.03597 0.54329 1.56537 2.46723 2.66155 2.92093 3.38827 3.44530 3.46890 3.85462 3.99321 4.12053 4.42507 4.46559 4.53186 4.58888 4.86305 4.90433 4.96289 5.06613 5.15873 5.16446 5.23203 5.28353 5.34270 5.45725 5.51487 5.56528 5.61871 5.69413 5.76727 5.78243 5.86076 5.99488 6.06536 6.07578 6.20819 6.23714 6.24056 6.29169 6.36602 6.42915 6.53828 6.57946 6.73706 6.85027 6.97886 7.28703 7.61124 7.64389 7.95529 8.35639 9.47362 10.04127 10.38904 11.40107 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.002966 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.907847 B = 9439.173218 C = 9847.890694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.593 5.593 6 C 0.559 3.441 7 O -0.534 6.534 8 C -0.054 4.054 9 C -0.146 4.146 10 C 0.130 3.870 11 N -0.464 5.464 12 C 0.128 3.872 13 C -0.096 4.096 14 C -0.097 4.097 15 C -0.113 4.113 16 C -0.088 4.088 17 C -0.069 4.069 18 C 0.096 3.904 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.720 5.720 23 C -0.239 4.239 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.166 0.834 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.091 -2.316 -15.870 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.324 5.324 6 C 0.346 3.654 7 O -0.411 6.411 8 C -0.065 4.065 9 C -0.167 4.167 10 C -0.042 4.042 11 N -0.172 5.172 12 C 0.006 3.994 13 C -0.114 4.114 14 C -0.117 4.117 15 C -0.131 4.131 16 C -0.107 4.107 17 C -0.072 4.072 18 C -0.027 4.027 19 C -0.193 4.193 20 C 0.074 3.926 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.370 4.370 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.164 0.836 37 H 0.184 0.816 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.691 -2.143 -16.180 21.303 hybrid contribution -1.043 -0.225 1.058 1.502 sum 12.649 -2.368 -15.122 19.856 Atomic orbital electron populations 1.21656 0.93893 1.01861 1.01953 1.21756 0.96738 1.00043 0.94505 0.91218 1.21792 0.77584 1.01248 0.99580 1.48130 1.07344 1.59198 1.17748 1.18109 0.85757 0.77970 0.83558 1.90790 1.74552 1.47051 1.28738 1.20370 0.93881 0.94217 0.98046 1.22424 0.96300 0.98420 0.99551 1.22906 0.90462 0.96671 0.94143 1.67804 1.40080 0.98494 1.10840 1.18830 0.89520 0.92788 0.98214 1.20807 1.00194 0.90633 0.99784 1.20967 0.94852 0.97887 0.98009 1.21015 0.93767 0.98869 0.99485 1.21151 1.01062 0.91341 0.97108 1.18587 0.93633 0.93913 1.01030 1.22189 0.98346 0.97518 0.84641 1.22698 1.00440 1.00428 0.95732 1.20192 0.90247 0.95742 0.86448 0.93310 1.42410 1.76451 1.11404 1.05772 1.19251 1.35978 0.94110 0.87678 0.91169 1.24730 1.02001 0.96001 0.98056 1.69665 1.49951 1.09465 1.28845 0.86160 0.77337 0.78874 0.84056 1.20570 1.21913 1.21889 0.90648 0.93759 0.92968 0.91126 0.89180 0.83638 0.81644 0.84473 0.85049 0.85181 0.84603 0.89968 0.90907 0.92222 0.90394 0.78206 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.03 37.16 0.34 -1.78 16 2 C -0.11 -1.74 2.46 -90.50 -0.22 -1.96 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.12 1.65 5.70 -3.71 -0.02 1.63 16 5 N -0.59 -8.04 2.97 -173.81 -0.52 -8.56 16 6 C 0.56 8.09 6.57 -12.30 -0.08 8.01 16 7 O -0.53 -9.05 15.22 5.32 0.08 -8.97 16 8 C -0.05 -0.70 4.95 -104.35 -0.52 -1.22 16 9 C -0.15 -1.49 7.53 -38.95 -0.29 -1.79 16 10 C 0.13 1.27 11.14 -17.52 -0.20 1.07 16 11 N -0.46 -5.61 10.30 -11.00 -0.11 -5.72 16 12 C 0.13 1.62 6.61 -84.87 -0.56 1.06 16 13 C -0.10 -1.00 9.98 -39.43 -0.39 -1.39 16 14 C -0.10 -0.89 9.94 -39.95 -0.40 -1.28 16 15 C -0.11 -1.16 9.96 -39.88 -0.40 -1.56 16 16 C -0.09 -1.12 9.25 -39.60 -0.37 -1.49 16 17 C -0.07 -0.92 5.76 -106.52 -0.61 -1.54 16 18 C 0.10 1.20 5.56 -3.68 -0.02 1.18 16 19 C -0.15 -2.46 5.66 -26.62 -0.15 -2.62 16 20 C 0.18 3.34 2.19 -67.89 -0.15 3.19 16 21 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 22 N -0.72 -16.83 4.41 -53.38 -0.24 -17.07 16 23 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 24 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 27 Si 0.90 21.72 29.55 -169.99 -5.02 16.70 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 31 H 0.07 1.39 7.36 -51.93 -0.38 1.01 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.27 7.03 -51.93 -0.37 0.91 16 36 H 0.15 1.13 7.37 -52.49 -0.39 0.75 16 37 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 1.85 6.49 -52.49 -0.34 1.51 16 42 H 0.08 0.94 4.72 -51.93 -0.25 0.69 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.38 9.75 7.51 -40.82 -0.31 9.44 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -31.88 378.47 -10.31 -42.19 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.64 Total: 9.59 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -4.29 Total: -7.31 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.14 Total: -57.89 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.08 Total: -8.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.88 -10.31 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.902 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds