Wall clock time and date at job start Tue Mar 31 2020 22:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.49955 * 2 1 4 4 C 1.53200 * 109.49890 * 239.90455 * 2 1 3 5 5 N 1.46922 * 108.77268 * 185.41237 * 4 2 1 6 6 C 1.34783 * 120.63093 * 233.62685 * 5 4 2 7 7 O 1.21548 * 119.99717 * 356.01816 * 6 5 4 8 8 C 1.47896 * 120.00370 * 176.01506 * 6 5 4 9 9 C 1.38889 * 121.11052 * 53.52399 * 8 6 5 10 10 C 1.39278 * 119.57936 * 179.68908 * 9 8 6 11 11 N 1.30992 * 121.88164 * 0.65757 * 10 9 8 12 12 C 1.33532 * 121.82594 * 359.64545 * 11 10 9 13 13 C 1.40716 * 120.96736 * 180.02562 * 12 11 10 14 14 C 1.36056 * 119.74119 * 179.97438 * 13 12 11 15 15 C 1.39355 * 121.05409 * 359.96704 * 14 13 12 16 16 C 1.36244 * 120.83920 * 0.02562 * 15 14 13 17 17 C 1.40098 * 119.64261 * 0.02562 * 16 15 14 18 18 C 1.46988 * 118.75646 * 53.61334 * 5 4 2 19 19 C 1.53186 * 108.73957 * 306.40498 * 18 5 4 20 20 C 1.53036 * 109.33924 * 54.62136 * 19 18 5 21 21 H 1.09003 * 109.45927 * 58.64184 * 20 19 18 22 22 N 1.46502 * 109.45995 * 178.61549 * 20 19 18 23 23 C 1.36939 * 120.00083 * 274.99663 * 22 20 19 24 24 H 1.08003 * 119.99914 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00175 * 179.97438 * 23 22 20 26 26 N 1.31614 * 120.00151 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99950 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47014 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46663 * 120.00246 * 27 25 23 30 30 H 1.48495 * 109.47089 * 240.00296 * 27 25 23 31 31 H 1.08999 * 109.47425 * 299.92992 * 1 2 3 32 32 H 1.08998 * 109.46964 * 59.93473 * 1 2 3 33 33 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.58579 * 305.20224 * 4 2 1 35 35 H 1.08996 * 109.58382 * 65.48434 * 4 2 1 36 36 H 1.08002 * 120.21133 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.05528 * 180.33113 * 10 9 8 38 38 H 1.08002 * 120.12933 * 0.02562 * 13 12 11 39 39 H 1.08004 * 119.47213 * 179.97438 * 14 13 12 40 40 H 1.07999 * 119.57736 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.17591 * 179.97438 * 16 15 14 42 42 H 1.09004 * 109.63205 * 186.61189 * 18 5 4 43 43 H 1.09005 * 109.58750 * 66.16733 * 18 5 4 44 44 H 1.09005 * 109.49674 * 294.65613 * 19 18 5 45 45 H 1.09005 * 109.49939 * 174.59229 * 19 18 5 46 46 H 0.96999 * 120.00400 * 95.00266 * 22 20 19 47 47 H 0.97001 * 120.00008 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 -1.2495 5 7 3.5046 -0.8294 -1.1693 6 6 4.2812 -0.3861 -2.1778 7 8 3.7711 0.0396 -3.1956 8 6 5.7539 -0.4177 -2.0460 9 6 6.4194 -1.5896 -1.7100 10 6 7.8079 -1.5847 -1.6008 11 7 8.5132 -0.4979 -1.7941 12 6 7.9409 0.6654 -2.1136 13 6 8.7163 1.8219 -2.3177 14 6 8.1071 2.9942 -2.6430 15 6 6.7224 3.0712 -2.7792 16 6 5.9398 1.9722 -2.5894 17 6 6.5332 0.7487 -2.2523 18 6 4.1059 -1.4269 0.0315 19 6 3.5708 -0.6948 1.2661 20 6 2.0408 -0.7228 1.2485 21 1 1.6967 -1.7570 1.2357 22 7 1.5266 -0.0521 2.4451 23 6 1.3951 -0.7482 3.6170 24 1 1.6709 -1.7915 3.6593 25 6 0.9083 -0.1125 4.7510 26 7 0.5726 1.1590 4.6997 27 14 0.7296 -1.0620 6.3498 28 1 1.1724 -2.4645 6.1448 29 1 1.5675 -0.4270 7.3987 30 1 -0.6925 -1.0489 6.7770 31 1 -0.3634 0.5127 0.8906 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6053 -1.7219 -1.2976 35 1 1.7616 -0.1598 -2.1390 36 1 5.8641 -2.5002 -1.5399 37 1 8.3171 -2.5019 -1.3444 38 1 9.7908 1.7788 -2.2173 39 1 8.7064 3.8792 -2.7982 40 1 6.2639 4.0139 -3.0386 41 1 4.8676 2.0441 -2.6973 42 1 5.1903 -1.3249 -0.0125 43 1 3.8382 -2.4820 0.0878 44 1 3.9159 0.3391 1.2540 45 1 3.9334 -1.1887 2.1676 46 1 1.2791 0.8850 2.4073 47 1 0.2321 1.6031 5.4920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036111932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:36 Heat of formation + Delta-G solvation = 16.963783 kcal Electronic energy + Delta-G solvation = -29465.326217 eV Core-core repulsion = 25612.294051 eV Total energy + Delta-G solvation = -3853.032167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.31103 -40.93753 -39.06799 -38.12054 -36.25871 -34.97105 -34.09023 -33.06851 -31.62742 -31.23990 -30.97398 -27.95864 -26.97866 -25.72804 -24.74232 -24.37328 -23.51493 -23.10918 -21.36274 -20.49454 -19.34925 -19.05693 -18.56246 -18.16334 -17.48795 -16.82625 -16.55892 -16.24770 -15.72521 -15.67181 -15.52799 -15.37385 -15.30888 -14.98184 -14.92359 -14.62580 -14.43154 -14.15810 -13.79615 -13.67277 -13.22046 -13.02385 -12.89207 -12.83293 -12.75383 -12.61568 -12.50059 -12.36576 -12.11770 -12.08305 -11.87555 -11.69183 -11.66809 -11.35021 -11.18273 -10.88820 -10.49563 -9.83888 -9.79764 -9.32844 -8.96923 -7.91379 -5.19099 -0.88360 -0.25923 0.67941 1.40006 1.48730 1.49233 1.58595 1.78764 1.95573 2.57819 3.01168 3.11300 3.29954 3.42396 3.59560 3.65007 3.76502 3.77317 3.82012 3.94269 4.04595 4.11749 4.16514 4.24622 4.33287 4.36060 4.43074 4.47358 4.55467 4.63497 4.73874 4.75826 4.76106 4.80010 4.92666 4.96425 4.99161 5.03109 5.14819 5.25717 5.30461 5.37032 5.41698 5.43880 5.47170 5.55513 5.59024 5.81276 6.18120 6.30077 6.79827 6.85706 7.36637 8.12299 8.35215 9.32435 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.002966 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.907847 B = 9439.173218 C = 9847.890694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.049 0.951 4 C 0.127 3.873 5 N -0.592 5.592 6 C 0.562 3.438 7 O -0.565 6.565 8 C -0.082 4.082 9 C -0.132 4.132 10 C 0.131 3.869 11 N -0.479 5.479 12 C 0.106 3.894 13 C -0.102 4.102 14 C -0.093 4.093 15 C -0.108 4.108 16 C -0.120 4.120 17 C -0.089 4.089 18 C 0.105 3.895 19 C -0.143 4.143 20 C 0.180 3.820 21 H 0.055 0.945 22 N -0.732 5.732 23 C -0.228 4.228 24 H 0.080 0.920 25 C -0.077 4.077 26 N -0.971 5.971 27 Si 0.966 3.034 28 H -0.262 1.262 29 H -0.299 1.299 30 H -0.298 1.298 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.175 0.825 37 H 0.207 0.793 38 H 0.156 0.844 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.036 0.964 45 H 0.069 0.931 46 H 0.370 0.630 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.998 -4.418 -16.628 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.068 0.932 4 C 0.005 3.995 5 N -0.323 5.323 6 C 0.350 3.650 7 O -0.445 6.445 8 C -0.093 4.093 9 C -0.152 4.152 10 C -0.041 4.041 11 N -0.187 5.187 12 C -0.015 4.015 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.126 4.126 16 C -0.139 4.139 17 C -0.092 4.092 18 C -0.017 4.017 19 C -0.184 4.184 20 C 0.072 3.928 21 H 0.073 0.927 22 N -0.371 5.371 23 C -0.360 4.360 24 H 0.098 0.902 25 C -0.269 4.269 26 N -0.623 5.623 27 Si 0.797 3.203 28 H -0.187 1.187 29 H -0.226 1.226 30 H -0.226 1.226 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.192 0.808 37 H 0.223 0.777 38 H 0.173 0.827 39 H 0.185 0.815 40 H 0.169 0.831 41 H 0.134 0.866 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.055 0.945 45 H 0.088 0.912 46 H 0.201 0.799 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.628 -4.289 -16.966 23.462 hybrid contribution -1.579 0.433 1.212 2.037 sum 14.049 -3.855 -15.754 21.458 Atomic orbital electron populations 1.21569 0.93646 1.02263 1.01238 1.21618 0.96890 0.98958 0.94602 0.93242 1.21705 0.77965 1.02019 0.97854 1.48156 1.07199 1.59077 1.17852 1.18348 0.86523 0.77000 0.83091 1.90762 1.75344 1.48320 1.30112 1.20362 0.92903 0.95516 1.00568 1.22788 0.96759 0.98272 0.97396 1.23592 0.90432 0.97360 0.92674 1.67869 1.40596 0.98927 1.11308 1.19146 0.89408 0.93877 0.99046 1.21148 1.01091 0.90452 0.99327 1.21336 0.94471 0.98805 0.96664 1.21352 0.94461 0.98913 0.97835 1.21138 1.00455 0.92596 0.99668 1.18785 0.94352 0.94290 1.01770 1.22209 0.99103 0.98217 0.82145 1.22487 0.98700 0.99639 0.97534 1.20432 0.91355 0.95623 0.85433 0.92716 1.42610 1.76814 1.10844 1.06807 1.19647 1.33539 0.94460 0.88395 0.90203 1.25485 1.03235 0.96876 1.01289 1.69826 1.52138 1.11141 1.29176 0.85163 0.76538 0.78459 0.80175 1.18651 1.22648 1.22560 0.94116 0.91680 0.91938 0.88848 0.89522 0.80769 0.77687 0.82686 0.81535 0.83101 0.86632 0.88334 0.87899 0.94505 0.91205 0.79882 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.03 71.98 0.65 -3.36 16 2 C -0.10 -3.17 2.46 -10.71 -0.03 -3.19 16 3 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.13 3.32 5.70 86.37 0.49 3.81 16 5 N -0.59 -15.25 2.97 -822.09 -2.44 -17.70 16 6 C 0.56 16.01 6.57 86.80 0.57 16.58 16 7 O -0.57 -19.48 15.22 -3.87 -0.06 -19.53 16 8 C -0.08 -2.07 4.95 -19.69 -0.10 -2.17 16 9 C -0.13 -2.34 7.53 22.68 0.17 -2.17 16 10 C 0.13 2.17 11.14 85.07 0.95 3.12 16 11 N -0.48 -10.66 10.30 -188.73 -1.94 -12.60 16 12 C 0.11 2.59 6.61 40.34 0.27 2.86 16 13 C -0.10 -1.98 9.98 22.37 0.22 -1.76 16 14 C -0.09 -1.54 9.94 22.03 0.22 -1.32 16 15 C -0.11 -2.15 9.96 22.07 0.22 -1.93 16 16 C -0.12 -3.16 9.25 22.26 0.21 -2.95 16 17 C -0.09 -2.40 5.76 -21.10 -0.12 -2.52 16 18 C 0.11 2.39 5.56 86.35 0.48 2.87 16 19 C -0.14 -4.53 5.66 30.67 0.17 -4.35 16 20 C 0.18 6.45 2.19 45.02 0.10 6.55 16 21 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 22 N -0.73 -34.82 4.41 -322.81 -1.42 -36.24 16 23 C -0.23 -11.98 9.93 84.03 0.83 -11.15 16 24 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 25 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 26 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 27 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 28 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 30 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 31 H 0.04 1.54 7.36 -2.39 -0.02 1.53 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.09 2.39 7.03 -2.39 -0.02 2.37 16 36 H 0.17 1.97 7.37 -2.91 -0.02 1.95 16 37 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 39 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 41 H 0.12 3.41 6.49 -2.91 -0.02 3.39 16 42 H 0.10 1.97 4.72 -2.38 -0.01 1.96 16 43 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 46 H 0.37 19.55 7.51 -92.71 -0.70 18.86 16 47 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -72.17 378.47 2.51 -69.66 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.30 Total: 32.63 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 5.77 Total: -4.90 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -5.53 Total: -124.88 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.06 Total: -19.53 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -72.17 2.51 -69.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.623 kcal (2) G-P(sol) polarization free energy of solvation -72.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds