Wall clock time and date at job start Tue Mar 31 2020 22:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.52578 * 2 1 4 4 C 1.53196 * 109.49997 * 120.07994 * 2 1 3 5 5 N 1.46922 * 108.89517 * 174.66271 * 4 2 1 6 6 C 1.34774 * 120.63599 * 126.29686 * 5 4 2 7 7 O 1.21539 * 119.99814 * 354.24556 * 6 5 4 8 8 C 1.47902 * 120.00278 * 174.24244 * 6 5 4 9 9 C 1.38894 * 121.10947 * 306.07664 * 8 6 5 10 10 C 1.39274 * 119.57813 * 179.97438 * 9 8 6 11 11 N 1.30989 * 121.88147 * 0.02562 * 10 9 8 12 12 C 1.33531 * 121.83145 * 359.97438 * 11 10 9 13 13 C 1.40722 * 120.97172 * 180.02562 * 12 11 10 14 14 C 1.36064 * 119.73832 * 179.19396 * 13 12 11 15 15 C 1.39354 * 121.05211 * 0.80677 * 14 13 12 16 16 C 1.36243 * 120.84050 * 359.44997 * 15 14 13 17 17 C 1.40105 * 119.64471 * 0.02562 * 16 15 14 18 18 C 1.46928 * 118.73660 * 306.31560 * 5 4 2 19 19 C 1.53192 * 108.77510 * 53.60905 * 18 5 4 20 20 C 1.53041 * 109.31460 * 305.37034 * 19 18 5 21 21 H 1.08996 * 109.46199 * 181.37318 * 20 19 18 22 22 N 1.46508 * 109.45790 * 301.33904 * 20 19 18 23 23 C 1.36932 * 120.00162 * 275.00339 * 22 20 19 24 24 H 1.08004 * 120.00338 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00067 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00007 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00021 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47182 * 60.00286 * 27 25 23 29 29 H 1.48504 * 109.47042 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47016 * 299.99720 * 27 25 23 31 31 H 1.08999 * 109.46995 * 299.92045 * 1 2 3 32 32 H 1.08997 * 109.47271 * 59.92121 * 1 2 3 33 33 H 1.09005 * 109.46890 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.58615 * 54.79773 * 4 2 1 35 35 H 1.09000 * 109.58302 * 294.51897 * 4 2 1 36 36 H 1.07999 * 120.21071 * 359.95402 * 9 8 6 37 37 H 1.08002 * 119.05695 * 180.02562 * 10 9 8 38 38 H 1.07995 * 120.12782 * 359.97438 * 13 12 11 39 39 H 1.07999 * 119.47152 * 180.25373 * 14 13 12 40 40 H 1.07997 * 119.57731 * 179.42566 * 15 14 13 41 41 H 1.07998 * 120.17807 * 180.02562 * 16 15 14 42 42 H 1.08999 * 109.59064 * 173.39690 * 18 5 4 43 43 H 1.09004 * 109.58656 * 293.68538 * 18 5 4 44 44 H 1.09003 * 109.49727 * 65.31523 * 19 18 5 45 45 H 1.09000 * 109.50282 * 185.38172 * 19 18 5 46 46 H 0.96996 * 119.99519 * 94.99946 * 22 20 19 47 47 H 0.97002 * 120.00182 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5048 -0.8289 1.1731 6 6 4.2790 -0.3843 2.1827 7 8 3.7764 0.2031 3.1206 8 6 5.7401 -0.6111 2.1495 9 6 6.2647 -1.8857 1.9780 10 6 7.6459 -2.0628 1.9511 11 7 8.4750 -1.0574 2.0838 12 6 8.0425 0.1947 2.2520 13 6 8.9494 1.2615 2.3922 14 6 8.4811 2.5297 2.5460 15 6 7.1128 2.7911 2.5839 16 6 6.2054 1.7828 2.4567 17 6 6.6521 0.4659 2.2860 18 6 4.1084 -1.4277 -0.0252 19 6 3.5766 -0.6974 -1.2624 20 6 2.0465 -0.7256 -1.2482 21 1 1.6659 -0.2278 -2.1401 22 7 1.5842 -2.1157 -1.2304 23 6 1.4555 -2.8096 -2.4038 24 1 1.6952 -2.3323 -3.3426 25 6 1.0179 -4.1268 -2.3868 26 7 0.7271 -4.7089 -1.2427 27 14 0.8416 -5.0732 -3.9877 28 1 2.1588 -5.1416 -4.6698 29 1 0.3609 -6.4484 -3.6993 30 1 -0.1357 -4.3818 -4.8663 31 1 -0.3633 0.5126 0.8907 32 1 -0.3634 0.5150 -0.8892 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6053 -1.7215 1.2981 35 1 1.7616 -0.1592 2.1390 36 1 5.6058 -2.7341 1.8667 37 1 8.0447 -3.0574 1.8169 38 1 10.0130 1.0759 2.3653 39 1 9.1810 3.3457 2.6491 40 1 6.7674 3.8057 2.7162 41 1 5.1474 1.9975 2.4872 42 1 5.1925 -1.3254 0.0216 43 1 3.8429 -2.4835 -0.0794 44 1 3.9215 0.3366 -1.2508 45 1 3.9418 -1.1926 -2.1622 46 1 1.3693 -2.5444 -0.3873 47 1 0.4217 -5.6296 -1.2308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036111933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:41 Heat of formation + Delta-G solvation = 35.841474 kcal Electronic energy + Delta-G solvation = -29837.554370 eV Core-core repulsion = 25985.340801 eV Total energy + Delta-G solvation = -3852.213568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.28918 -39.79253 -37.75985 -37.25470 -34.46228 -33.66393 -32.72050 -31.48046 -30.75491 -30.23390 -29.24281 -26.71876 -25.52425 -24.32788 -23.80192 -23.49423 -22.62520 -21.73432 -19.97701 -18.62367 -18.20848 -17.60477 -17.37304 -17.07047 -16.24331 -15.54002 -15.22149 -14.77258 -14.64459 -14.48863 -14.33843 -14.18948 -14.05227 -14.00510 -13.46747 -13.39243 -13.30808 -12.80717 -12.57395 -12.29568 -11.98665 -11.80642 -11.69934 -11.55607 -11.45989 -11.24782 -10.94142 -10.84826 -10.66828 -10.57452 -10.53775 -10.26389 -10.16236 -9.90562 -9.60899 -9.47883 -9.00678 -8.94903 -8.45118 -8.35195 -7.03835 -5.84299 -3.13017 0.03919 0.61505 1.62716 2.61005 2.76437 3.06905 3.38511 3.44044 3.44605 3.91726 4.07268 4.27186 4.52522 4.52851 4.55882 4.64177 4.94526 4.96098 5.09355 5.13601 5.23260 5.28509 5.32003 5.41099 5.46817 5.52961 5.65497 5.67684 5.74006 5.81966 5.83794 5.85625 5.98040 6.00681 6.11872 6.15193 6.24739 6.26402 6.29849 6.32242 6.43334 6.53460 6.61809 6.62662 6.69340 6.85191 6.91946 7.50281 7.63467 7.68841 8.12390 8.34156 9.45925 10.01617 10.36951 11.37947 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.003240 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.906936 B = 8638.704679 C = 9538.061850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.118 3.882 5 N -0.588 5.588 6 C 0.557 3.443 7 O -0.538 6.538 8 C -0.053 4.053 9 C -0.141 4.141 10 C 0.133 3.867 11 N -0.467 5.467 12 C 0.127 3.873 13 C -0.095 4.095 14 C -0.100 4.100 15 C -0.117 4.117 16 C -0.087 4.087 17 C -0.071 4.071 18 C 0.110 3.890 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.010 4.010 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.167 0.833 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.706 11.857 6.848 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.004 4.004 5 N -0.319 5.319 6 C 0.344 3.656 7 O -0.417 6.417 8 C -0.065 4.065 9 C -0.161 4.161 10 C -0.039 4.039 11 N -0.175 5.175 12 C 0.005 3.995 13 C -0.114 4.114 14 C -0.120 4.120 15 C -0.135 4.135 16 C -0.106 4.106 17 C -0.073 4.073 18 C -0.012 4.012 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.361 5.361 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.166 0.834 37 H 0.184 0.816 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.315 12.029 7.149 19.316 hybrid contribution -1.053 -0.784 -0.730 1.502 sum 12.262 11.244 6.420 17.833 Atomic orbital electron populations 1.21657 0.94039 1.03255 1.00529 1.21758 0.96604 0.98846 0.95600 0.91576 1.21738 0.77768 1.01917 0.98959 1.48086 1.07310 1.58764 1.17731 1.18098 0.85524 0.79089 0.82895 1.90773 1.74431 1.41716 1.34734 1.20399 0.93771 0.94034 0.98280 1.22486 0.97382 0.97157 0.99108 1.22934 0.89189 0.98278 0.93491 1.67810 1.39335 0.98985 1.11364 1.18841 0.90232 0.91747 0.98667 1.20800 0.99515 0.90953 1.00114 1.20937 0.95739 0.96739 0.98546 1.20979 0.93028 0.99582 0.99867 1.21141 1.00941 0.91155 0.97336 1.18610 0.93236 0.94054 1.01427 1.21889 0.96619 0.99140 0.83597 1.22521 1.00522 0.98652 0.97318 1.20272 0.90642 0.87392 0.94886 0.93014 1.42460 1.78990 1.07653 1.06965 1.19169 1.37433 0.93871 0.86565 0.91301 1.24696 1.02162 0.97161 0.96614 1.69632 1.51581 1.13144 1.23715 0.86315 0.77783 0.79222 0.83118 1.21327 1.21784 1.21355 0.93701 0.92718 0.90984 0.90213 0.89587 0.83445 0.81581 0.84566 0.85183 0.85343 0.84665 0.91195 0.89301 0.93342 0.90555 0.78119 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.07 37.16 0.34 -1.78 16 2 C -0.11 -1.70 2.68 -90.34 -0.24 -1.94 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.91 5.42 -3.71 -0.02 1.89 16 5 N -0.59 -9.21 2.97 -173.86 -0.52 -9.73 16 6 C 0.56 8.93 6.52 -12.30 -0.08 8.85 16 7 O -0.54 -9.88 15.24 5.33 0.08 -9.80 16 8 C -0.05 -0.76 4.65 -104.34 -0.49 -1.25 16 9 C -0.14 -1.72 7.90 -38.95 -0.31 -2.03 16 10 C 0.13 1.49 11.14 -17.53 -0.20 1.30 16 11 N -0.47 -6.04 10.30 -11.00 -0.11 -6.15 16 12 C 0.13 1.67 6.61 -84.87 -0.56 1.11 16 13 C -0.10 -1.01 9.99 -39.42 -0.39 -1.41 16 14 C -0.10 -0.90 9.94 -39.95 -0.40 -1.30 16 15 C -0.12 -1.17 9.96 -39.88 -0.40 -1.57 16 16 C -0.09 -1.11 9.25 -39.60 -0.37 -1.48 16 17 C -0.07 -0.98 5.76 -106.52 -0.61 -1.60 16 18 C 0.11 1.70 5.37 -3.71 -0.02 1.68 16 19 C -0.15 -2.41 5.78 -26.61 -0.15 -2.56 16 20 C 0.18 3.21 2.54 -67.73 -0.17 3.04 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -15.89 3.65 -53.23 -0.19 -16.09 16 23 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 24 H 0.07 1.72 7.83 -52.48 -0.41 1.30 16 25 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -26.35 13.06 55.49 0.72 -25.62 16 27 Si 0.90 21.33 29.55 -169.99 -5.02 16.31 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.29 7.55 -51.93 -0.39 0.90 16 34 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 35 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 36 H 0.15 1.64 7.80 -52.49 -0.41 1.23 16 37 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.14 1.84 6.51 -52.49 -0.34 1.50 16 42 H 0.07 0.98 5.39 -51.93 -0.28 0.70 16 43 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.38 9.07 5.93 -40.82 -0.24 8.83 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -30.15 375.83 -10.24 -40.39 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.55 Total: 10.68 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -4.31 Total: -5.66 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.10 Total: -57.59 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.15 -10.24 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.232 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds