Wall clock time and date at job start Tue Mar 31 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.52578 * 2 1 4 4 C 1.53196 * 109.49997 * 120.07994 * 2 1 3 5 5 N 1.46922 * 108.89517 * 174.66271 * 4 2 1 6 6 C 1.34774 * 120.63599 * 126.29686 * 5 4 2 7 7 O 1.21539 * 119.99814 * 354.24556 * 6 5 4 8 8 C 1.47902 * 120.00278 * 174.24244 * 6 5 4 9 9 C 1.38894 * 121.10947 * 306.07664 * 8 6 5 10 10 C 1.39274 * 119.57813 * 179.97438 * 9 8 6 11 11 N 1.30989 * 121.88147 * 0.02562 * 10 9 8 12 12 C 1.33531 * 121.83145 * 359.97438 * 11 10 9 13 13 C 1.40722 * 120.97172 * 180.02562 * 12 11 10 14 14 C 1.36064 * 119.73832 * 179.19396 * 13 12 11 15 15 C 1.39354 * 121.05211 * 0.80677 * 14 13 12 16 16 C 1.36243 * 120.84050 * 359.44997 * 15 14 13 17 17 C 1.40105 * 119.64471 * 0.02562 * 16 15 14 18 18 C 1.46928 * 118.73660 * 306.31560 * 5 4 2 19 19 C 1.53192 * 108.77510 * 53.60905 * 18 5 4 20 20 C 1.53041 * 109.31460 * 305.37034 * 19 18 5 21 21 H 1.08996 * 109.46199 * 181.37318 * 20 19 18 22 22 N 1.46508 * 109.45790 * 301.33904 * 20 19 18 23 23 C 1.36932 * 120.00162 * 275.00339 * 22 20 19 24 24 H 1.08004 * 120.00338 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00067 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00007 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00021 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47182 * 60.00286 * 27 25 23 29 29 H 1.48504 * 109.47042 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47016 * 299.99720 * 27 25 23 31 31 H 1.08999 * 109.46995 * 299.92045 * 1 2 3 32 32 H 1.08997 * 109.47271 * 59.92121 * 1 2 3 33 33 H 1.09005 * 109.46890 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.58615 * 54.79773 * 4 2 1 35 35 H 1.09000 * 109.58302 * 294.51897 * 4 2 1 36 36 H 1.07999 * 120.21071 * 359.95402 * 9 8 6 37 37 H 1.08002 * 119.05695 * 180.02562 * 10 9 8 38 38 H 1.07995 * 120.12782 * 359.97438 * 13 12 11 39 39 H 1.07999 * 119.47152 * 180.25373 * 14 13 12 40 40 H 1.07997 * 119.57731 * 179.42566 * 15 14 13 41 41 H 1.07998 * 120.17807 * 180.02562 * 16 15 14 42 42 H 1.08999 * 109.59064 * 173.39690 * 18 5 4 43 43 H 1.09004 * 109.58656 * 293.68538 * 18 5 4 44 44 H 1.09003 * 109.49727 * 65.31523 * 19 18 5 45 45 H 1.09000 * 109.50282 * 185.38172 * 19 18 5 46 46 H 0.96996 * 119.99519 * 94.99946 * 22 20 19 47 47 H 0.97002 * 120.00182 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5048 -0.8289 1.1731 6 6 4.2790 -0.3843 2.1827 7 8 3.7764 0.2031 3.1206 8 6 5.7401 -0.6111 2.1495 9 6 6.2647 -1.8857 1.9780 10 6 7.6459 -2.0628 1.9511 11 7 8.4750 -1.0574 2.0838 12 6 8.0425 0.1947 2.2520 13 6 8.9494 1.2615 2.3922 14 6 8.4811 2.5297 2.5460 15 6 7.1128 2.7911 2.5839 16 6 6.2054 1.7828 2.4567 17 6 6.6521 0.4659 2.2860 18 6 4.1084 -1.4277 -0.0252 19 6 3.5766 -0.6974 -1.2624 20 6 2.0465 -0.7256 -1.2482 21 1 1.6659 -0.2278 -2.1401 22 7 1.5842 -2.1157 -1.2304 23 6 1.4555 -2.8096 -2.4038 24 1 1.6952 -2.3323 -3.3426 25 6 1.0179 -4.1268 -2.3868 26 7 0.7271 -4.7089 -1.2427 27 14 0.8416 -5.0732 -3.9877 28 1 2.1588 -5.1416 -4.6698 29 1 0.3609 -6.4484 -3.6993 30 1 -0.1357 -4.3818 -4.8663 31 1 -0.3633 0.5126 0.8907 32 1 -0.3634 0.5150 -0.8892 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6053 -1.7215 1.2981 35 1 1.7616 -0.1592 2.1390 36 1 5.6058 -2.7341 1.8667 37 1 8.0447 -3.0574 1.8169 38 1 10.0130 1.0759 2.3653 39 1 9.1810 3.3457 2.6491 40 1 6.7674 3.8057 2.7162 41 1 5.1474 1.9975 2.4872 42 1 5.1925 -1.3254 0.0216 43 1 3.8429 -2.4835 -0.0794 44 1 3.9215 0.3366 -1.2508 45 1 3.9418 -1.1926 -2.1622 46 1 1.3693 -2.5444 -0.3873 47 1 0.4217 -5.6296 -1.2308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036111933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:40 Heat of formation + Delta-G solvation = 19.490472 kcal Electronic energy + Delta-G solvation = -29838.263402 eV Core-core repulsion = 25985.340801 eV Total energy + Delta-G solvation = -3852.922601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.30537 -40.99031 -39.14257 -38.10441 -35.96209 -34.91879 -34.09828 -33.01935 -31.61626 -31.14617 -30.92401 -27.96370 -26.92961 -25.61288 -25.14091 -24.62261 -23.61296 -23.11254 -21.14211 -19.90375 -19.28229 -19.21092 -18.53582 -18.19273 -17.45444 -16.70130 -16.55914 -16.16778 -15.90152 -15.62217 -15.61289 -15.37464 -15.26479 -14.92422 -14.90034 -14.58867 -14.51168 -14.26633 -13.85414 -13.64317 -13.11261 -12.99542 -12.84740 -12.79589 -12.69627 -12.59938 -12.45065 -12.36142 -12.16535 -12.01185 -11.96503 -11.67548 -11.59972 -11.32790 -11.17949 -10.85788 -10.52246 -9.83090 -9.73973 -9.31253 -8.92584 -7.87962 -5.14221 -0.89220 -0.25967 0.68631 1.43965 1.51240 1.51847 1.57597 1.77890 1.94605 2.60496 3.01140 3.12115 3.28751 3.45656 3.60088 3.65179 3.78499 3.82471 3.85169 3.97088 4.05384 4.12350 4.17804 4.26530 4.34182 4.37063 4.43989 4.47967 4.56088 4.58301 4.67689 4.77739 4.81306 4.91256 4.98159 4.99961 5.04817 5.11099 5.16148 5.23062 5.26407 5.32555 5.42024 5.44570 5.45769 5.56777 5.61117 5.83259 6.22603 6.33653 6.77583 6.85669 7.41810 8.16602 8.41160 9.34834 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.003240 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.906936 B = 8638.704679 C = 9538.061850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.123 3.877 5 N -0.587 5.587 6 C 0.561 3.439 7 O -0.566 6.566 8 C -0.077 4.077 9 C -0.137 4.137 10 C 0.132 3.868 11 N -0.476 5.476 12 C 0.106 3.894 13 C -0.101 4.101 14 C -0.090 4.090 15 C -0.103 4.103 16 C -0.117 4.117 17 C -0.086 4.086 18 C 0.120 3.880 19 C -0.142 4.142 20 C 0.174 3.826 21 H 0.049 0.951 22 N -0.723 5.723 23 C -0.229 4.229 24 H 0.074 0.926 25 C -0.069 4.069 26 N -0.967 5.967 27 Si 0.962 3.038 28 H -0.280 1.280 29 H -0.302 1.302 30 H -0.284 1.284 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.154 0.846 37 H 0.200 0.800 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.156 0.844 41 H 0.119 0.881 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.375 0.625 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.890 13.806 6.454 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 H 0.102 0.898 4 C 0.001 3.999 5 N -0.317 5.317 6 C 0.350 3.650 7 O -0.446 6.446 8 C -0.088 4.088 9 C -0.158 4.158 10 C -0.040 4.040 11 N -0.184 5.184 12 C -0.015 4.015 13 C -0.120 4.120 14 C -0.109 4.109 15 C -0.121 4.121 16 C -0.136 4.136 17 C -0.089 4.089 18 C -0.002 4.002 19 C -0.183 4.183 20 C 0.065 3.935 21 H 0.067 0.933 22 N -0.364 5.364 23 C -0.361 4.361 24 H 0.092 0.908 25 C -0.262 4.262 26 N -0.618 5.618 27 Si 0.792 3.208 28 H -0.206 1.206 29 H -0.229 1.229 30 H -0.210 1.210 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.172 0.828 37 H 0.217 0.783 38 H 0.173 0.827 39 H 0.187 0.813 40 H 0.174 0.826 41 H 0.137 0.863 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.208 0.792 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.523 14.024 6.729 21.975 hybrid contribution -1.663 -1.250 -0.565 2.156 sum 13.860 12.774 6.165 19.831 Atomic orbital electron populations 1.21589 0.93712 1.01670 1.01892 1.21681 0.96801 0.99223 0.94095 0.89755 1.21614 0.78240 1.00815 0.99280 1.48068 1.07051 1.58722 1.17855 1.18368 0.86355 0.78177 0.82146 1.90742 1.75220 1.42996 1.35653 1.20330 0.92570 0.95276 1.00673 1.22643 0.98181 0.96587 0.98342 1.23425 0.88570 0.99377 0.92610 1.67874 1.39693 0.99298 1.11530 1.19217 0.90344 0.92578 0.99369 1.21139 1.00159 0.90956 0.99727 1.21363 0.95838 0.97273 0.96458 1.21368 0.93243 1.00166 0.97277 1.21134 1.00776 0.91720 0.99925 1.18777 0.93672 0.94377 1.02053 1.21741 0.97600 0.97554 0.83269 1.22400 0.98783 0.99864 0.97219 1.20463 0.91816 0.85342 0.95855 0.93345 1.42549 1.79071 1.09120 1.05676 1.19507 1.35016 0.93869 0.87677 0.90821 1.25342 1.03466 0.98359 0.98995 1.69781 1.53691 1.12900 1.25416 0.85389 0.77810 0.77427 0.80161 1.20583 1.22874 1.21009 0.91573 0.92132 0.93939 0.92262 0.89444 0.82838 0.78347 0.82734 0.81276 0.82611 0.86315 0.89384 0.91688 0.91298 0.91283 0.79169 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.07 71.98 0.65 -3.32 16 2 C -0.10 -3.03 2.68 -10.61 -0.03 -3.06 16 3 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 4 C 0.12 4.02 5.42 86.36 0.47 4.49 16 5 N -0.59 -18.52 2.97 -822.26 -2.44 -20.96 16 6 C 0.56 18.20 6.52 86.80 0.57 18.77 16 7 O -0.57 -21.21 15.24 -3.84 -0.06 -21.26 16 8 C -0.08 -2.20 4.65 -19.68 -0.09 -2.29 16 9 C -0.14 -3.29 7.90 22.68 0.18 -3.11 16 10 C 0.13 2.78 11.14 85.07 0.95 3.73 16 11 N -0.48 -11.59 10.30 -188.73 -1.94 -13.54 16 12 C 0.11 2.65 6.61 40.35 0.27 2.92 16 13 C -0.10 -1.89 9.99 22.37 0.22 -1.67 16 14 C -0.09 -1.31 9.94 22.03 0.22 -1.09 16 15 C -0.10 -1.80 9.96 22.07 0.22 -1.58 16 16 C -0.12 -2.91 9.25 22.26 0.21 -2.70 16 17 C -0.09 -2.35 5.76 -21.09 -0.12 -2.47 16 18 C 0.12 3.71 5.37 86.36 0.46 4.18 16 19 C -0.14 -4.46 5.78 30.67 0.18 -4.29 16 20 C 0.17 6.18 2.54 45.12 0.11 6.29 16 21 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 22 N -0.72 -32.44 3.65 -322.32 -1.18 -33.62 16 23 C -0.23 -11.64 9.93 84.03 0.83 -10.80 16 24 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 25 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 26 N -0.97 -56.09 13.06 21.65 0.28 -55.81 16 27 Si 0.96 44.29 29.55 68.60 2.03 46.32 16 28 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 29 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 30 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.54 7.55 -2.38 -0.02 1.53 16 34 H 0.06 2.19 6.64 -2.39 -0.02 2.18 16 35 H 0.09 2.85 7.00 -2.39 -0.02 2.83 16 36 H 0.15 3.39 7.80 -2.91 -0.02 3.36 16 37 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.12 3.28 6.51 -2.91 -0.02 3.26 16 42 H 0.09 2.41 5.39 -2.39 -0.01 2.39 16 43 H 0.06 2.34 7.74 -2.38 -0.02 2.32 16 44 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.37 18.30 5.93 -92.71 -0.55 17.75 16 47 H 0.25 14.23 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -66.30 375.83 2.89 -63.41 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 0.44 Total: 34.77 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 5.76 Total: 0.69 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -5.28 Total: -123.92 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.06 Total: -21.26 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -66.30 2.89 -63.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036111933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.896 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds