Wall clock time and date at job start Tue Mar 31 2020 22:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.49952 * 2 1 4 4 C 1.53196 * 109.52297 * 120.07776 * 2 1 3 5 5 N 1.46928 * 108.77179 * 174.60109 * 4 2 1 6 6 C 1.34775 * 120.62733 * 126.42071 * 5 4 2 7 7 O 1.21594 * 120.00098 * 354.29490 * 6 5 4 8 8 C 1.47552 * 120.00034 * 174.30338 * 6 5 4 9 9 C 1.38696 * 120.38823 * 305.84924 * 8 6 5 10 10 C 1.38971 * 120.53308 * 179.76400 * 9 8 6 11 11 C 1.36200 * 121.24109 * 0.49802 * 10 9 8 12 12 C 1.40715 * 120.20359 * 359.76263 * 11 10 9 13 13 N 1.33686 * 120.94979 * 180.02562 * 12 11 10 14 14 C 1.31070 * 121.34382 * 179.97438 * 13 12 11 15 15 C 1.39340 * 121.70663 * 359.97438 * 14 13 12 16 16 C 1.36681 * 119.86524 * 0.06209 * 15 14 13 17 17 C 1.40470 * 118.17172 * 359.91755 * 16 15 14 18 18 C 1.46929 * 118.74168 * 306.39292 * 5 4 2 19 19 C 1.53188 * 108.77345 * 53.61119 * 18 5 4 20 20 C 1.53039 * 109.49893 * 239.93530 * 2 1 3 21 21 H 1.09003 * 109.46060 * 298.67249 * 20 2 1 22 22 N 1.46493 * 109.46206 * 58.63002 * 20 2 1 23 23 C 1.36941 * 120.00462 * 205.07245 * 22 20 2 24 24 H 1.08000 * 119.99292 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00047 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99701 * 179.97438 * 25 23 22 27 27 Si 1.86799 * 120.00199 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.47182 * 90.00502 * 27 25 23 29 29 H 1.48503 * 109.46877 * 209.99824 * 27 25 23 30 30 H 1.48489 * 109.47147 * 330.00153 * 27 25 23 31 31 H 1.08999 * 109.46764 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46951 * 300.06727 * 1 2 3 33 33 H 1.08999 * 109.46634 * 60.06723 * 1 2 3 34 34 H 1.08997 * 109.59026 * 294.38661 * 4 2 1 35 35 H 1.09001 * 109.58354 * 54.67547 * 4 2 1 36 36 H 1.08003 * 119.72889 * 0.02562 * 9 8 6 37 37 H 1.08004 * 119.37402 * 180.24075 * 10 9 8 38 38 H 1.08002 * 119.89907 * 179.74636 * 11 10 9 39 39 H 1.07995 * 119.14407 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.06430 * 180.02562 * 15 14 13 41 41 H 1.08003 * 120.90966 * 179.97438 * 16 15 14 42 42 H 1.09001 * 109.58613 * 293.81948 * 18 5 4 43 43 H 1.09004 * 109.58495 * 173.39795 * 18 5 4 44 44 H 1.09001 * 109.49447 * 185.41287 * 19 18 5 45 45 H 1.08997 * 109.49878 * 65.32018 * 19 18 5 46 46 H 0.97005 * 119.99690 * 25.06750 * 22 20 2 47 47 H 0.96999 * 120.00283 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7236 1.2495 5 7 3.5053 -0.8283 1.1690 6 6 4.2819 -0.3854 2.1775 7 8 3.7811 0.1996 3.1186 8 6 5.7397 -0.6100 2.1397 9 6 6.2482 -1.8889 1.9676 10 6 7.6207 -2.1033 1.9266 11 6 8.5010 -1.0731 2.0632 12 6 8.0306 0.2406 2.2452 13 7 8.8813 1.2630 2.3803 14 6 8.4516 2.4896 2.5496 15 6 7.0917 2.7893 2.5967 16 6 6.1694 1.7890 2.4657 17 6 6.6358 0.4765 2.2840 18 6 4.1060 -1.4255 -0.0316 19 6 3.5709 -0.6940 -1.2666 20 6 2.0408 -0.7227 -1.2485 21 1 1.6972 -1.7571 -1.2355 22 7 1.5260 -0.0528 -2.4452 23 6 1.3945 -0.7494 -3.6169 24 1 1.6708 -1.7926 -3.6587 25 6 0.9071 -0.1144 -4.7509 26 7 0.7813 -0.7838 -5.8772 27 14 0.4299 1.6902 -4.6787 28 1 1.6080 2.5278 -5.0191 29 1 -0.6615 1.9528 -5.6508 30 1 -0.0360 2.0245 -3.3090 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3632 0.5128 -0.8906 34 1 1.7645 -0.1580 2.1389 35 1 1.6044 -1.7207 1.2992 36 1 5.5721 -2.7242 1.8605 37 1 7.9962 -3.1064 1.7879 38 1 9.5634 -1.2650 2.0320 39 1 9.1703 3.2888 2.6546 40 1 6.7670 3.8097 2.7370 41 1 5.1112 2.0022 2.5001 42 1 3.8387 -2.4808 -0.0875 43 1 5.1903 -1.3229 0.0127 44 1 3.9335 -1.1884 -2.1678 45 1 3.9155 0.3400 -1.2547 46 1 1.2781 0.8843 -2.4077 47 1 0.4404 -0.3402 -6.6696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036124930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:33 Heat of formation + Delta-G solvation = 37.240209 kcal Electronic energy + Delta-G solvation = -29511.422215 eV Core-core repulsion = 25659.269300 eV Total energy + Delta-G solvation = -3852.152915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.37702 -40.00009 -37.91129 -37.15684 -34.83069 -33.74697 -32.92774 -31.62922 -30.88154 -30.55154 -29.84040 -26.71009 -25.50807 -24.59323 -23.82993 -23.27076 -22.39133 -21.61118 -20.17736 -19.39534 -18.55397 -17.65129 -17.37720 -17.20833 -16.59344 -16.00842 -15.24582 -14.97396 -14.90454 -14.56560 -14.44089 -14.34232 -14.02484 -13.79570 -13.47557 -13.42147 -13.33745 -12.85786 -12.61531 -12.53596 -12.30526 -12.11049 -11.89941 -11.77465 -11.65303 -11.46800 -11.09332 -10.94257 -10.81386 -10.75469 -10.58662 -10.28748 -10.21819 -9.83925 -9.64089 -9.63036 -9.10384 -8.98100 -8.68433 -8.49941 -7.32578 -5.82560 -3.18218 -0.05455 0.52108 1.53945 2.40008 2.64424 2.95028 3.32772 3.36107 3.41677 3.81647 3.97715 4.14934 4.44578 4.49295 4.53972 4.56750 4.70458 4.82542 4.92045 4.98367 5.00215 5.09284 5.14633 5.19836 5.37982 5.45655 5.49093 5.51338 5.54985 5.62010 5.67364 5.76563 5.78907 5.88881 5.96634 5.98152 6.02686 6.04958 6.18097 6.21815 6.22876 6.34271 6.43669 6.47720 6.62840 6.71165 6.87945 7.29197 7.60300 7.92675 7.97890 8.36521 9.14515 9.87387 10.07098 11.35695 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.003059 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.595144 B = 9151.248681 C = 9389.420622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.120 3.880 5 N -0.597 5.597 6 C 0.560 3.440 7 O -0.539 6.539 8 C -0.097 4.097 9 C -0.079 4.079 10 C -0.105 4.105 11 C -0.075 4.075 12 C 0.123 3.877 13 N -0.475 5.475 14 C 0.133 3.867 15 C -0.174 4.174 16 C -0.048 4.048 17 C -0.070 4.070 18 C 0.102 3.898 19 C -0.152 4.152 20 C 0.189 3.811 21 H 0.058 0.942 22 N -0.745 5.745 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.882 3.118 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.161 0.839 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.107 0.553 18.890 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.328 5.328 6 C 0.348 3.652 7 O -0.417 6.417 8 C -0.101 4.101 9 C -0.098 4.098 10 C -0.125 4.125 11 C -0.094 4.094 12 C 0.002 3.998 13 N -0.183 5.183 14 C -0.039 4.039 15 C -0.194 4.194 16 C -0.074 4.074 17 C -0.072 4.072 18 C -0.021 4.021 19 C -0.193 4.193 20 C 0.079 3.921 21 H 0.076 0.924 22 N -0.387 5.387 23 C -0.373 4.373 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.203 1.203 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.178 0.822 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.689 0.380 19.125 23.522 hybrid contribution -1.224 1.535 -0.249 1.979 sum 12.465 1.915 18.875 22.701 Atomic orbital electron populations 1.21673 0.94008 1.02192 1.01656 1.21790 0.96664 1.00051 0.94867 0.91325 1.21746 0.77969 1.01184 0.99341 1.48134 1.07190 1.59728 1.17761 1.18182 0.85928 0.78586 0.82521 1.90785 1.74855 1.41590 1.34509 1.19874 0.92903 0.94030 1.03318 1.21402 0.96001 0.95830 0.96583 1.20838 0.92489 0.99770 0.99356 1.20957 1.00838 0.89993 0.97590 1.18809 0.88319 0.93813 0.98835 1.68055 1.37947 0.99725 1.12561 1.22995 0.94310 0.93780 0.92840 1.21968 0.94269 1.00860 1.02274 1.21649 1.01359 0.91354 0.93053 1.18554 0.93540 0.93820 1.01314 1.22034 0.98233 0.97530 0.84295 1.22651 0.99885 1.00469 0.96245 1.20169 0.90445 0.96072 0.85405 0.92437 1.42766 1.78050 1.10197 1.07648 1.19043 1.36500 0.95796 0.85957 0.89188 1.24652 1.01286 0.97393 0.95611 1.69693 1.52019 1.35697 1.00648 0.86596 0.78244 0.86867 0.77060 1.21174 1.21747 1.20316 0.92506 0.93534 0.91337 0.89126 0.91014 0.84617 0.84397 0.84287 0.82172 0.84244 0.83830 0.90955 0.90034 0.89909 0.92345 0.80628 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.03 37.16 0.34 -1.67 16 2 C -0.11 -1.70 2.46 -90.50 -0.22 -1.92 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.12 1.57 5.73 -3.71 -0.02 1.55 16 5 N -0.60 -7.76 2.97 -173.98 -0.52 -8.28 16 6 C 0.56 7.79 6.47 -12.46 -0.08 7.71 16 7 O -0.54 -8.89 15.14 5.28 0.08 -8.81 16 8 C -0.10 -1.20 4.63 -104.66 -0.48 -1.68 16 9 C -0.08 -0.76 7.77 -39.14 -0.30 -1.07 16 10 C -0.10 -0.86 9.92 -40.04 -0.40 -1.26 16 11 C -0.08 -0.72 9.96 -39.38 -0.39 -1.12 16 12 C 0.12 1.49 6.60 -84.88 -0.56 0.93 16 13 N -0.47 -5.62 10.34 -10.99 -0.11 -5.73 16 14 C 0.13 1.28 11.15 -17.47 -0.19 1.09 16 15 C -0.17 -1.68 10.04 -39.73 -0.40 -2.08 16 16 C -0.05 -0.59 9.29 -39.30 -0.37 -0.95 16 17 C -0.07 -0.89 5.76 -106.53 -0.61 -1.50 16 18 C 0.10 1.25 5.58 -3.71 -0.02 1.23 16 19 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 20 C 0.19 3.30 2.19 -67.89 -0.15 3.15 16 21 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 22 N -0.74 -16.44 4.21 -53.39 -0.22 -16.67 16 23 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 24 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -28.54 13.97 55.49 0.78 -27.76 16 27 Si 0.88 21.60 27.74 -169.99 -4.71 16.88 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 30 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.16 7.36 -51.93 -0.38 0.78 16 34 H 0.09 1.22 7.00 -51.93 -0.36 0.86 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.14 1.06 7.75 -52.48 -0.41 0.66 16 37 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.14 1.84 6.48 -52.48 -0.34 1.50 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.92 5.39 -51.93 -0.28 0.64 16 44 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.36 8.03 5.37 -40.82 -0.22 7.81 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -33.04 376.26 -9.97 -43.01 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.65 Total: 8.36 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -4.27 Total: -6.68 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.08 Total: -58.44 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.04 -9.97 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036124930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.254 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds