Wall clock time and date at job start Tue Mar 31 2020 22:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.49952 * 2 1 4 4 C 1.53196 * 109.52297 * 120.07776 * 2 1 3 5 5 N 1.46928 * 108.77179 * 174.60109 * 4 2 1 6 6 C 1.34775 * 120.62733 * 126.42071 * 5 4 2 7 7 O 1.21594 * 120.00098 * 354.29490 * 6 5 4 8 8 C 1.47552 * 120.00034 * 174.30338 * 6 5 4 9 9 C 1.38696 * 120.38823 * 305.84924 * 8 6 5 10 10 C 1.38971 * 120.53308 * 179.76400 * 9 8 6 11 11 C 1.36200 * 121.24109 * 0.49802 * 10 9 8 12 12 C 1.40715 * 120.20359 * 359.76263 * 11 10 9 13 13 N 1.33686 * 120.94979 * 180.02562 * 12 11 10 14 14 C 1.31070 * 121.34382 * 179.97438 * 13 12 11 15 15 C 1.39340 * 121.70663 * 359.97438 * 14 13 12 16 16 C 1.36681 * 119.86524 * 0.06209 * 15 14 13 17 17 C 1.40470 * 118.17172 * 359.91755 * 16 15 14 18 18 C 1.46929 * 118.74168 * 306.39292 * 5 4 2 19 19 C 1.53188 * 108.77345 * 53.61119 * 18 5 4 20 20 C 1.53039 * 109.49893 * 239.93530 * 2 1 3 21 21 H 1.09003 * 109.46060 * 298.67249 * 20 2 1 22 22 N 1.46493 * 109.46206 * 58.63002 * 20 2 1 23 23 C 1.36941 * 120.00462 * 205.07245 * 22 20 2 24 24 H 1.08000 * 119.99292 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00047 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99701 * 179.97438 * 25 23 22 27 27 Si 1.86799 * 120.00199 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.47182 * 90.00502 * 27 25 23 29 29 H 1.48503 * 109.46877 * 209.99824 * 27 25 23 30 30 H 1.48489 * 109.47147 * 330.00153 * 27 25 23 31 31 H 1.08999 * 109.46764 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46951 * 300.06727 * 1 2 3 33 33 H 1.08999 * 109.46634 * 60.06723 * 1 2 3 34 34 H 1.08997 * 109.59026 * 294.38661 * 4 2 1 35 35 H 1.09001 * 109.58354 * 54.67547 * 4 2 1 36 36 H 1.08003 * 119.72889 * 0.02562 * 9 8 6 37 37 H 1.08004 * 119.37402 * 180.24075 * 10 9 8 38 38 H 1.08002 * 119.89907 * 179.74636 * 11 10 9 39 39 H 1.07995 * 119.14407 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.06430 * 180.02562 * 15 14 13 41 41 H 1.08003 * 120.90966 * 179.97438 * 16 15 14 42 42 H 1.09001 * 109.58613 * 293.81948 * 18 5 4 43 43 H 1.09004 * 109.58495 * 173.39795 * 18 5 4 44 44 H 1.09001 * 109.49447 * 185.41287 * 19 18 5 45 45 H 1.08997 * 109.49878 * 65.32018 * 19 18 5 46 46 H 0.97005 * 119.99690 * 25.06750 * 22 20 2 47 47 H 0.96999 * 120.00283 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7236 1.2495 5 7 3.5053 -0.8283 1.1690 6 6 4.2819 -0.3854 2.1775 7 8 3.7811 0.1996 3.1186 8 6 5.7397 -0.6100 2.1397 9 6 6.2482 -1.8889 1.9676 10 6 7.6207 -2.1033 1.9266 11 6 8.5010 -1.0731 2.0632 12 6 8.0306 0.2406 2.2452 13 7 8.8813 1.2630 2.3803 14 6 8.4516 2.4896 2.5496 15 6 7.0917 2.7893 2.5967 16 6 6.1694 1.7890 2.4657 17 6 6.6358 0.4765 2.2840 18 6 4.1060 -1.4255 -0.0316 19 6 3.5709 -0.6940 -1.2666 20 6 2.0408 -0.7227 -1.2485 21 1 1.6972 -1.7571 -1.2355 22 7 1.5260 -0.0528 -2.4452 23 6 1.3945 -0.7494 -3.6169 24 1 1.6708 -1.7926 -3.6587 25 6 0.9071 -0.1144 -4.7509 26 7 0.7813 -0.7838 -5.8772 27 14 0.4299 1.6902 -4.6787 28 1 1.6080 2.5278 -5.0191 29 1 -0.6615 1.9528 -5.6508 30 1 -0.0360 2.0245 -3.3090 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3632 0.5128 -0.8906 34 1 1.7645 -0.1580 2.1389 35 1 1.6044 -1.7207 1.2992 36 1 5.5721 -2.7242 1.8605 37 1 7.9962 -3.1064 1.7879 38 1 9.5634 -1.2650 2.0320 39 1 9.1703 3.2888 2.6546 40 1 6.7670 3.8097 2.7370 41 1 5.1112 2.0022 2.5001 42 1 3.8387 -2.4808 -0.0875 43 1 5.1903 -1.3229 0.0127 44 1 3.9335 -1.1884 -2.1678 45 1 3.9155 0.3400 -1.2547 46 1 1.2781 0.8843 -2.4077 47 1 0.4404 -0.3402 -6.6696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036124930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:32 Heat of formation + Delta-G solvation = 17.149863 kcal Electronic energy + Delta-G solvation = -29512.293397 eV Core-core repulsion = 25659.269300 eV Total energy + Delta-G solvation = -3853.024098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.23346 -41.01767 -39.15228 -37.94903 -36.31945 -34.70717 -34.30973 -33.23786 -31.67544 -31.61948 -31.17671 -27.80388 -26.92051 -25.51087 -24.60266 -24.53903 -23.55416 -23.03433 -21.46189 -20.50324 -19.54462 -19.28769 -18.27236 -18.04444 -17.61694 -17.01127 -16.75252 -16.13466 -16.05105 -15.65285 -15.41233 -15.32450 -15.19094 -15.02866 -14.87620 -14.50135 -14.34035 -14.19225 -13.80901 -13.77814 -13.46790 -13.17223 -13.03977 -12.97135 -12.86648 -12.61694 -12.47491 -12.36366 -12.10284 -12.06006 -11.89782 -11.77604 -11.63708 -11.25482 -11.21167 -10.92491 -10.50904 -9.84499 -9.78139 -9.35497 -9.24217 -8.00674 -5.32494 -0.83807 -0.23104 0.68871 1.36889 1.38155 1.45476 1.46626 1.78448 2.00885 2.48331 3.02543 3.22135 3.29636 3.31531 3.51946 3.67405 3.73628 3.77446 3.82188 3.94888 3.95324 4.00328 4.13849 4.23051 4.32112 4.35999 4.41476 4.47390 4.58531 4.69169 4.73311 4.74000 4.76828 4.80156 4.90374 4.96996 4.98924 5.04621 5.12940 5.22436 5.25718 5.28688 5.35641 5.42357 5.48436 5.56768 5.76202 5.79911 6.23416 6.24259 6.82493 6.93626 7.09483 7.86413 8.04278 9.20833 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.003059 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.595144 B = 9151.248681 C = 9389.420622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 H 0.059 0.941 4 C 0.125 3.875 5 N -0.595 5.595 6 C 0.563 3.437 7 O -0.571 6.571 8 C -0.126 4.126 9 C -0.068 4.068 10 C -0.097 4.097 11 C -0.078 4.078 12 C 0.100 3.900 13 N -0.493 5.493 14 C 0.129 3.871 15 C -0.165 4.165 16 C -0.077 4.077 17 C -0.088 4.088 18 C 0.112 3.888 19 C -0.144 4.144 20 C 0.183 3.817 21 H 0.055 0.945 22 N -0.748 5.748 23 C -0.218 4.218 24 H 0.064 0.936 25 C -0.061 4.061 26 N -0.983 5.983 27 Si 0.944 3.056 28 H -0.285 1.285 29 H -0.299 1.299 30 H -0.254 1.254 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.157 0.843 37 H 0.176 0.824 38 H 0.157 0.843 39 H 0.196 0.804 40 H 0.166 0.834 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.361 0.639 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.491 0.443 20.810 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 H 0.077 0.923 4 C 0.003 3.997 5 N -0.326 5.326 6 C 0.353 3.647 7 O -0.452 6.452 8 C -0.130 4.130 9 C -0.087 4.087 10 C -0.116 4.116 11 C -0.097 4.097 12 C -0.020 4.020 13 N -0.201 5.201 14 C -0.043 4.043 15 C -0.185 4.185 16 C -0.103 4.103 17 C -0.090 4.090 18 C -0.010 4.010 19 C -0.185 4.185 20 C 0.075 3.925 21 H 0.073 0.927 22 N -0.390 5.390 23 C -0.349 4.349 24 H 0.082 0.918 25 C -0.253 4.253 26 N -0.635 5.635 27 Si 0.773 3.227 28 H -0.211 1.211 29 H -0.226 1.226 30 H -0.178 1.178 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.175 0.825 37 H 0.193 0.807 38 H 0.174 0.826 39 H 0.212 0.788 40 H 0.184 0.816 41 H 0.146 0.854 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.194 0.806 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.093 0.264 21.104 25.946 hybrid contribution -1.567 1.513 -0.774 2.312 sum 13.526 1.777 20.329 24.482 Atomic orbital electron populations 1.21635 0.93554 1.02513 1.01521 1.21665 0.96992 0.99361 0.94355 0.92288 1.21696 0.78211 1.01909 0.97921 1.48145 1.07115 1.59585 1.17755 1.18437 0.86668 0.77647 0.81988 1.90758 1.75624 1.42980 1.35803 1.19827 0.91724 0.95248 1.06204 1.21745 0.97159 0.95231 0.94538 1.21228 0.91559 1.01129 0.97670 1.21292 1.02123 0.89389 0.96886 1.19169 0.88152 0.95012 0.99706 1.68104 1.38266 1.00508 1.13208 1.23588 0.94960 0.94049 0.91698 1.22293 0.94102 1.01619 1.00462 1.21682 1.01103 0.92319 0.95203 1.18740 0.94177 0.94182 1.01934 1.21995 0.98889 0.97988 0.82144 1.22461 0.98289 1.00177 0.97535 1.20411 0.91495 0.95788 0.84777 0.92742 1.42801 1.78347 1.10157 1.07697 1.19016 1.33748 0.94792 0.87312 0.91836 1.25359 1.02744 1.01703 0.95452 1.69858 1.54508 1.37596 1.01492 0.85565 0.77521 0.81730 0.77887 1.21135 1.22565 1.17849 0.91984 0.91263 0.93823 0.89273 0.89091 0.82529 0.80651 0.82552 0.78757 0.81598 0.85418 0.88625 0.88594 0.91539 0.93520 0.80566 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.03 71.98 0.65 -3.07 16 2 C -0.10 -2.96 2.46 -10.71 -0.03 -2.99 16 3 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 4 C 0.13 3.04 5.73 86.36 0.49 3.54 16 5 N -0.60 -14.51 2.97 -822.62 -2.44 -16.95 16 6 C 0.56 15.18 6.47 86.70 0.56 15.74 16 7 O -0.57 -18.80 15.14 -4.01 -0.06 -18.86 16 8 C -0.13 -2.96 4.63 -19.89 -0.09 -3.05 16 9 C -0.07 -1.13 7.77 22.56 0.18 -0.95 16 10 C -0.10 -1.26 9.92 21.97 0.22 -1.05 16 11 C -0.08 -1.33 9.96 22.40 0.22 -1.11 16 12 C 0.10 2.31 6.60 40.27 0.27 2.57 16 13 N -0.49 -11.02 10.34 -188.68 -1.95 -12.97 16 14 C 0.13 2.28 11.15 85.07 0.95 3.22 16 15 C -0.17 -3.04 10.04 22.17 0.22 -2.82 16 16 C -0.08 -1.88 9.29 22.45 0.21 -1.67 16 17 C -0.09 -2.20 5.76 -21.10 -0.12 -2.32 16 18 C 0.11 2.52 5.58 86.36 0.48 3.00 16 19 C -0.14 -4.40 5.66 30.67 0.17 -4.23 16 20 C 0.18 6.26 2.19 45.02 0.10 6.35 16 21 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 22 N -0.75 -32.82 4.21 -322.82 -1.36 -34.18 16 23 C -0.22 -11.75 10.41 84.03 0.87 -10.88 16 24 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 25 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 26 N -0.98 -61.82 13.97 21.65 0.30 -61.52 16 27 Si 0.94 45.06 27.74 68.60 1.90 46.96 16 28 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 29 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 30 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.42 7.36 -2.39 -0.02 1.41 16 34 H 0.09 2.27 7.00 -2.39 -0.02 2.25 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.16 1.86 7.75 -2.91 -0.02 1.84 16 37 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 38 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.13 3.43 6.48 -2.91 -0.02 3.41 16 42 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.10 1.94 5.39 -2.38 -0.01 1.92 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.36 15.78 5.37 -92.70 -0.50 15.28 16 47 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -74.39 376.26 2.64 -71.75 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.43 Total: 28.53 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.82 Total: -2.75 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -5.45 Total: -125.62 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.06 Total: -18.86 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Total: -74.39 2.64 -71.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036124930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.895 kcal (2) G-P(sol) polarization free energy of solvation -74.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds