Wall clock time and date at job start Tue Mar 31 2020 22:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.49623 * 2 1 4 4 C 1.53190 * 109.49452 * 239.94060 * 2 1 3 5 5 N 1.46933 * 108.77092 * 185.41077 * 4 2 1 6 6 C 1.34779 * 120.63101 * 233.62857 * 5 4 2 7 7 O 1.21591 * 120.00074 * 355.76117 * 6 5 4 8 8 C 1.47551 * 120.00293 * 175.76200 * 6 5 4 9 9 C 1.38698 * 120.38420 * 54.83127 * 8 6 5 10 10 C 1.38973 * 120.53669 * 179.70115 * 9 8 6 11 11 C 1.36210 * 121.23707 * 0.58628 * 10 9 8 12 12 C 1.40714 * 120.19533 * 359.71862 * 11 10 9 13 13 N 1.33690 * 120.93410 * 180.02562 * 12 11 10 14 14 C 1.31062 * 121.34594 * 180.02562 * 13 12 11 15 15 C 1.39336 * 121.70127 * 359.95944 * 14 13 12 16 16 C 1.36676 * 119.87574 * 0.02562 * 15 14 13 17 17 C 1.40473 * 118.16598 * 359.97438 * 16 15 14 18 18 C 1.46926 * 118.73706 * 53.61046 * 5 4 2 19 19 C 1.53187 * 108.77392 * 306.38648 * 18 5 4 20 20 C 1.53038 * 109.49605 * 120.06929 * 2 1 3 21 21 H 1.08991 * 109.43374 * 61.28248 * 20 2 1 22 22 N 1.46494 * 109.48518 * 301.31729 * 20 2 1 23 23 C 1.36939 * 119.99907 * 154.91759 * 22 20 2 24 24 H 1.08005 * 119.99796 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00237 * 180.02562 * 23 22 20 26 26 N 1.31619 * 120.00133 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 120.00091 * 359.97438 * 25 23 22 28 28 H 1.48502 * 109.47072 * 89.99994 * 27 25 23 29 29 H 1.48498 * 109.47485 * 210.00068 * 27 25 23 30 30 H 1.48504 * 109.46986 * 330.00320 * 27 25 23 31 31 H 1.08996 * 109.46797 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46911 * 300.06158 * 1 2 3 33 33 H 1.09000 * 109.46879 * 60.06162 * 1 2 3 34 34 H 1.09003 * 109.58998 * 65.62865 * 4 2 1 35 35 H 1.08999 * 109.70766 * 305.26532 * 4 2 1 36 36 H 1.08002 * 119.72918 * 0.02562 * 9 8 6 37 37 H 1.08005 * 119.38162 * 180.25969 * 10 9 8 38 38 H 1.07994 * 119.90396 * 179.70426 * 11 10 9 39 39 H 1.07995 * 119.15319 * 179.97438 * 14 13 12 40 40 H 1.08007 * 120.06721 * 180.02562 * 15 14 13 41 41 H 1.07997 * 120.92284 * 180.02562 * 16 15 14 42 42 H 1.09000 * 109.58157 * 186.60222 * 18 5 4 43 43 H 1.08999 * 109.58786 * 66.17804 * 18 5 4 44 44 H 1.09008 * 109.49323 * 174.58794 * 19 18 5 45 45 H 1.08996 * 109.50234 * 294.65177 * 19 18 5 46 46 H 0.97001 * 120.00784 * 334.92032 * 22 20 2 47 47 H 0.96997 * 120.00499 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5047 -0.8286 -1.1699 6 6 4.2812 -0.3847 -2.1781 7 8 3.7711 0.0375 -3.1978 8 6 5.7504 -0.4111 -2.0444 9 6 6.4052 -1.5931 -1.7316 10 6 7.7894 -1.6229 -1.6110 11 6 8.5379 -0.4981 -1.7835 12 6 7.9158 0.7249 -2.0958 13 7 8.6361 1.8378 -2.2687 14 6 8.0651 2.9812 -2.5592 15 6 6.6838 3.0942 -2.7028 16 6 5.8900 1.9937 -2.5392 17 6 6.5076 0.7710 -2.2279 18 6 4.1053 -1.4266 0.0302 19 6 3.5709 -0.6954 1.2657 20 6 2.0408 -0.7228 1.2485 21 1 1.6963 -1.7568 1.2353 22 7 1.5272 -0.0526 2.4456 23 6 1.3958 -0.7494 3.6171 24 1 1.6704 -1.7931 3.6584 25 6 0.9087 -0.1145 4.7514 26 7 0.7819 -0.7843 5.8773 27 14 0.4330 1.6905 4.6799 28 1 -0.9978 1.8107 4.3010 29 1 0.6463 2.3118 6.0117 30 1 1.2724 2.3839 3.6700 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5129 -0.8905 34 1 1.7638 -0.1571 -2.1390 35 1 1.6055 -1.7211 -1.3012 36 1 5.8352 -2.4988 -1.5856 37 1 8.2804 -2.5545 -1.3709 38 1 9.6118 -0.5448 -1.6801 39 1 8.6811 3.8584 -2.6909 40 1 6.2411 4.0496 -2.9431 41 1 4.8176 2.0619 -2.6470 42 1 5.1896 -1.3245 -0.0143 43 1 3.8376 -2.4818 0.0858 44 1 3.9336 -1.1904 2.1666 45 1 3.9164 0.3383 1.2545 46 1 1.2802 0.8847 2.4085 47 1 0.4418 -0.3407 6.6700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036124937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:40 Heat of formation + Delta-G solvation = 38.992476 kcal Electronic energy + Delta-G solvation = -29565.043136 eV Core-core repulsion = 25712.966205 eV Total energy + Delta-G solvation = -3852.076931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.38725 -40.00532 -37.91122 -37.17272 -34.83525 -33.74883 -32.94359 -31.63428 -30.88476 -30.54060 -29.85721 -26.70079 -25.54587 -24.58416 -23.84053 -23.28156 -22.37874 -21.61416 -20.17697 -19.38857 -18.61608 -17.63054 -17.35778 -17.20762 -16.60646 -16.00528 -15.21531 -14.98207 -14.93791 -14.55213 -14.47355 -14.36040 -14.04235 -13.78310 -13.47753 -13.40677 -13.35382 -12.83782 -12.63091 -12.55231 -12.26861 -12.14432 -11.91016 -11.75694 -11.63895 -11.46796 -11.09004 -10.95410 -10.81004 -10.76957 -10.59876 -10.31522 -10.19732 -9.84034 -9.64080 -9.62660 -9.09711 -8.97584 -8.69285 -8.48942 -7.32764 -5.82764 -3.18428 -0.04947 0.52243 1.54700 2.40094 2.62461 2.95740 3.32694 3.35667 3.41324 3.81838 3.98055 4.14857 4.44850 4.48721 4.53720 4.56265 4.70297 4.82688 4.91581 4.97140 5.00485 5.09345 5.14113 5.19218 5.37549 5.44956 5.49417 5.50919 5.55215 5.61665 5.67397 5.75615 5.78114 5.88401 5.95984 5.98270 6.02303 6.04630 6.18394 6.21317 6.22197 6.33009 6.42374 6.47844 6.61509 6.70263 6.87735 7.28802 7.60645 7.92446 7.97620 8.36283 9.14289 9.87146 10.06807 11.35500 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.003137 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.583196 B = 8923.736403 C = 9171.603422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.596 5.596 6 C 0.560 3.440 7 O -0.539 6.539 8 C -0.097 4.097 9 C -0.082 4.082 10 C -0.105 4.105 11 C -0.075 4.075 12 C 0.124 3.876 13 N -0.475 5.475 14 C 0.133 3.867 15 C -0.174 4.174 16 C -0.048 4.048 17 C -0.069 4.069 18 C 0.097 3.903 19 C -0.152 4.152 20 C 0.189 3.811 21 H 0.058 0.942 22 N -0.745 5.745 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.881 3.119 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.161 0.839 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.916 1.509 -18.572 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.327 5.327 6 C 0.348 3.652 7 O -0.418 6.418 8 C -0.101 4.101 9 C -0.100 4.100 10 C -0.125 4.125 11 C -0.094 4.094 12 C 0.003 3.997 13 N -0.183 5.183 14 C -0.039 4.039 15 C -0.194 4.194 16 C -0.074 4.074 17 C -0.072 4.072 18 C -0.026 4.026 19 C -0.193 4.193 20 C 0.079 3.921 21 H 0.076 0.924 22 N -0.387 5.387 23 C -0.373 4.373 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.580 5.580 27 Si 0.712 3.288 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.178 0.822 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.520 1.374 -18.778 23.180 hybrid contribution -1.234 1.419 0.201 1.891 sum 12.286 2.793 -18.577 22.447 Atomic orbital electron populations 1.21667 0.93961 1.02262 1.01597 1.21797 0.96687 1.00026 0.94902 0.91348 1.21745 0.77958 1.01271 0.99187 1.48136 1.07202 1.59447 1.17943 1.18171 0.86129 0.77618 0.83324 1.90787 1.74882 1.47475 1.28622 1.19873 0.93232 0.94148 1.02827 1.21425 0.94955 0.97235 0.96419 1.20844 0.93288 0.98909 0.99411 1.20957 1.00810 0.90213 0.97390 1.18808 0.88887 0.93370 0.98686 1.68053 1.39234 0.98537 1.12433 1.22992 0.92730 0.95481 0.92730 1.21964 0.95116 1.00006 1.02272 1.21628 1.01378 0.91316 0.93105 1.18534 0.93805 0.93719 1.01095 1.22151 0.98581 0.97500 0.84384 1.22653 0.99884 1.00464 0.96273 1.20167 0.90463 0.96077 0.85388 0.92396 1.42770 1.78218 1.10030 1.07637 1.19044 1.36459 0.95678 0.86121 0.89180 1.24648 1.01297 0.97354 0.95614 1.69690 1.52002 1.35689 1.00668 0.86605 0.78581 0.86814 0.76834 1.21029 1.21760 1.20430 0.92443 0.91400 0.93505 0.89174 0.91003 0.84532 0.84367 0.84269 0.82165 0.84243 0.83906 0.89677 0.90844 0.89948 0.92362 0.80637 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.03 37.16 0.34 -1.64 16 2 C -0.11 -1.69 2.46 -90.50 -0.22 -1.91 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.12 1.58 5.71 -3.71 -0.02 1.56 16 5 N -0.60 -7.79 2.97 -173.99 -0.52 -8.31 16 6 C 0.56 7.82 6.45 -12.46 -0.08 7.74 16 7 O -0.54 -8.89 15.24 5.29 0.08 -8.81 16 8 C -0.10 -1.20 4.89 -104.65 -0.51 -1.72 16 9 C -0.08 -0.80 7.42 -39.14 -0.29 -1.09 16 10 C -0.10 -0.88 9.92 -40.04 -0.40 -1.27 16 11 C -0.08 -0.73 9.96 -39.38 -0.39 -1.13 16 12 C 0.12 1.51 6.60 -84.87 -0.56 0.95 16 13 N -0.47 -5.67 10.34 -10.99 -0.11 -5.78 16 14 C 0.13 1.29 11.15 -17.47 -0.19 1.10 16 15 C -0.17 -1.69 10.03 -39.74 -0.40 -2.09 16 16 C -0.05 -0.59 9.31 -39.31 -0.37 -0.96 16 17 C -0.07 -0.89 5.76 -106.53 -0.61 -1.50 16 18 C 0.10 1.18 5.56 -3.71 -0.02 1.16 16 19 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 20 C 0.19 3.29 2.19 -67.89 -0.15 3.14 16 21 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 22 N -0.74 -16.43 4.21 -53.39 -0.22 -16.66 16 23 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 24 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 26 N -0.93 -28.51 13.97 55.49 0.78 -27.74 16 27 Si 0.88 21.58 27.74 -169.99 -4.71 16.87 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 30 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.12 7.37 -51.93 -0.38 0.74 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.21 7.03 -51.93 -0.36 0.85 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.14 1.08 7.40 -52.49 -0.39 0.69 16 37 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.14 1.82 6.53 -52.49 -0.34 1.48 16 42 H 0.09 0.94 4.76 -51.93 -0.25 0.69 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.36 8.02 5.37 -40.82 -0.22 7.80 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -33.13 375.36 -9.95 -43.08 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.61 Total: 8.41 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -4.29 Total: -6.72 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.08 Total: -58.49 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.13 -9.95 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036124937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.077 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds