Wall clock time and date at job start Tue Mar 31 2020 22:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.49623 * 2 1 4 4 C 1.53190 * 109.49452 * 239.94060 * 2 1 3 5 5 N 1.46933 * 108.77092 * 185.41077 * 4 2 1 6 6 C 1.34779 * 120.63101 * 233.62857 * 5 4 2 7 7 O 1.21591 * 120.00074 * 355.76117 * 6 5 4 8 8 C 1.47551 * 120.00293 * 175.76200 * 6 5 4 9 9 C 1.38698 * 120.38420 * 54.83127 * 8 6 5 10 10 C 1.38973 * 120.53669 * 179.70115 * 9 8 6 11 11 C 1.36210 * 121.23707 * 0.58628 * 10 9 8 12 12 C 1.40714 * 120.19533 * 359.71862 * 11 10 9 13 13 N 1.33690 * 120.93410 * 180.02562 * 12 11 10 14 14 C 1.31062 * 121.34594 * 180.02562 * 13 12 11 15 15 C 1.39336 * 121.70127 * 359.95944 * 14 13 12 16 16 C 1.36676 * 119.87574 * 0.02562 * 15 14 13 17 17 C 1.40473 * 118.16598 * 359.97438 * 16 15 14 18 18 C 1.46926 * 118.73706 * 53.61046 * 5 4 2 19 19 C 1.53187 * 108.77392 * 306.38648 * 18 5 4 20 20 C 1.53038 * 109.49605 * 120.06929 * 2 1 3 21 21 H 1.08991 * 109.43374 * 61.28248 * 20 2 1 22 22 N 1.46494 * 109.48518 * 301.31729 * 20 2 1 23 23 C 1.36939 * 119.99907 * 154.91759 * 22 20 2 24 24 H 1.08005 * 119.99796 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00237 * 180.02562 * 23 22 20 26 26 N 1.31619 * 120.00133 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 120.00091 * 359.97438 * 25 23 22 28 28 H 1.48502 * 109.47072 * 89.99994 * 27 25 23 29 29 H 1.48498 * 109.47485 * 210.00068 * 27 25 23 30 30 H 1.48504 * 109.46986 * 330.00320 * 27 25 23 31 31 H 1.08996 * 109.46797 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46911 * 300.06158 * 1 2 3 33 33 H 1.09000 * 109.46879 * 60.06162 * 1 2 3 34 34 H 1.09003 * 109.58998 * 65.62865 * 4 2 1 35 35 H 1.08999 * 109.70766 * 305.26532 * 4 2 1 36 36 H 1.08002 * 119.72918 * 0.02562 * 9 8 6 37 37 H 1.08005 * 119.38162 * 180.25969 * 10 9 8 38 38 H 1.07994 * 119.90396 * 179.70426 * 11 10 9 39 39 H 1.07995 * 119.15319 * 179.97438 * 14 13 12 40 40 H 1.08007 * 120.06721 * 180.02562 * 15 14 13 41 41 H 1.07997 * 120.92284 * 180.02562 * 16 15 14 42 42 H 1.09000 * 109.58157 * 186.60222 * 18 5 4 43 43 H 1.08999 * 109.58786 * 66.17804 * 18 5 4 44 44 H 1.09008 * 109.49323 * 174.58794 * 19 18 5 45 45 H 1.08996 * 109.50234 * 294.65177 * 19 18 5 46 46 H 0.97001 * 120.00784 * 334.92032 * 22 20 2 47 47 H 0.96997 * 120.00499 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5047 -0.8286 -1.1699 6 6 4.2812 -0.3847 -2.1781 7 8 3.7711 0.0375 -3.1978 8 6 5.7504 -0.4111 -2.0444 9 6 6.4052 -1.5931 -1.7316 10 6 7.7894 -1.6229 -1.6110 11 6 8.5379 -0.4981 -1.7835 12 6 7.9158 0.7249 -2.0958 13 7 8.6361 1.8378 -2.2687 14 6 8.0651 2.9812 -2.5592 15 6 6.6838 3.0942 -2.7028 16 6 5.8900 1.9937 -2.5392 17 6 6.5076 0.7710 -2.2279 18 6 4.1053 -1.4266 0.0302 19 6 3.5709 -0.6954 1.2657 20 6 2.0408 -0.7228 1.2485 21 1 1.6963 -1.7568 1.2353 22 7 1.5272 -0.0526 2.4456 23 6 1.3958 -0.7494 3.6171 24 1 1.6704 -1.7931 3.6584 25 6 0.9087 -0.1145 4.7514 26 7 0.7819 -0.7843 5.8773 27 14 0.4330 1.6905 4.6799 28 1 -0.9978 1.8107 4.3010 29 1 0.6463 2.3118 6.0117 30 1 1.2724 2.3839 3.6700 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5129 -0.8905 34 1 1.7638 -0.1571 -2.1390 35 1 1.6055 -1.7211 -1.3012 36 1 5.8352 -2.4988 -1.5856 37 1 8.2804 -2.5545 -1.3709 38 1 9.6118 -0.5448 -1.6801 39 1 8.6811 3.8584 -2.6909 40 1 6.2411 4.0496 -2.9431 41 1 4.8176 2.0619 -2.6470 42 1 5.1896 -1.3245 -0.0143 43 1 3.8376 -2.4818 0.0858 44 1 3.9336 -1.1904 2.1666 45 1 3.9164 0.3383 1.2545 46 1 1.2802 0.8847 2.4085 47 1 0.4418 -0.3407 6.6700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036124937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:39 Heat of formation + Delta-G solvation = 18.809858 kcal Electronic energy + Delta-G solvation = -29565.918320 eV Core-core repulsion = 25712.966205 eV Total energy + Delta-G solvation = -3852.952115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.25184 -41.02273 -39.15497 -37.97249 -36.32257 -34.71563 -34.31606 -33.24607 -31.65549 -31.62831 -31.21243 -27.78946 -26.94467 -25.52634 -24.63956 -24.53148 -23.54168 -23.03587 -21.45917 -20.50716 -19.55402 -19.33867 -18.23553 -18.04980 -17.63450 -17.01399 -16.74819 -16.12851 -16.06222 -15.68220 -15.39988 -15.36134 -15.21007 -15.03074 -14.88428 -14.49549 -14.32660 -14.20943 -13.80634 -13.76552 -13.47458 -13.19901 -13.03238 -12.96573 -12.86167 -12.60212 -12.48567 -12.37231 -12.15932 -12.01789 -11.90684 -11.77565 -11.63567 -11.24878 -11.20741 -10.92993 -10.50793 -9.85039 -9.78589 -9.35712 -9.23844 -8.00686 -5.32507 -0.84118 -0.23815 0.69048 1.36790 1.38160 1.44678 1.45338 1.77381 2.00487 2.48204 3.01903 3.21558 3.29340 3.31453 3.51428 3.66648 3.72696 3.77147 3.80635 3.94640 3.95226 4.00478 4.12775 4.22188 4.31752 4.35765 4.40735 4.47013 4.58400 4.68266 4.72682 4.73907 4.76361 4.79646 4.90416 4.96025 4.99066 5.03975 5.12571 5.22030 5.24549 5.27723 5.35570 5.41768 5.47850 5.56313 5.75609 5.79874 6.23120 6.23821 6.82169 6.92823 7.09469 7.86350 8.04235 9.20861 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.003137 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.583196 B = 8923.736403 C = 9171.603422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 H 0.060 0.940 4 C 0.126 3.874 5 N -0.595 5.595 6 C 0.563 3.437 7 O -0.570 6.570 8 C -0.126 4.126 9 C -0.072 4.072 10 C -0.097 4.097 11 C -0.079 4.079 12 C 0.100 3.900 13 N -0.493 5.493 14 C 0.129 3.871 15 C -0.165 4.165 16 C -0.077 4.077 17 C -0.087 4.087 18 C 0.106 3.894 19 C -0.144 4.144 20 C 0.183 3.817 21 H 0.054 0.946 22 N -0.748 5.748 23 C -0.218 4.218 24 H 0.064 0.936 25 C -0.061 4.061 26 N -0.983 5.983 27 Si 0.945 3.055 28 H -0.279 1.279 29 H -0.300 1.300 30 H -0.259 1.259 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.158 0.842 37 H 0.176 0.824 38 H 0.157 0.843 39 H 0.196 0.804 40 H 0.167 0.833 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.361 0.639 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.364 1.679 -20.350 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.123 4.123 3 H 0.078 0.922 4 C 0.003 3.997 5 N -0.326 5.326 6 C 0.352 3.648 7 O -0.451 6.451 8 C -0.130 4.130 9 C -0.090 4.090 10 C -0.116 4.116 11 C -0.097 4.097 12 C -0.020 4.020 13 N -0.201 5.201 14 C -0.043 4.043 15 C -0.184 4.184 16 C -0.103 4.103 17 C -0.090 4.090 18 C -0.016 4.016 19 C -0.184 4.184 20 C 0.075 3.925 21 H 0.072 0.928 22 N -0.390 5.390 23 C -0.349 4.349 24 H 0.081 0.919 25 C -0.252 4.252 26 N -0.634 5.634 27 Si 0.773 3.227 28 H -0.205 1.205 29 H -0.227 1.227 30 H -0.184 1.184 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.176 0.824 37 H 0.194 0.806 38 H 0.175 0.825 39 H 0.213 0.787 40 H 0.185 0.815 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.194 0.806 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.989 1.540 -20.612 25.532 hybrid contribution -1.606 1.314 0.679 2.183 sum 13.383 2.854 -19.933 24.178 Atomic orbital electron populations 1.21638 0.93458 1.02544 1.01611 1.21666 0.97061 0.99354 0.94267 0.92195 1.21692 0.78201 1.01913 0.97879 1.48155 1.07142 1.59322 1.17942 1.18413 0.86885 0.76649 0.82816 1.90759 1.75655 1.48783 1.29911 1.19842 0.92237 0.95303 1.05605 1.21773 0.95860 0.96903 0.94507 1.21237 0.92609 0.99922 0.97842 1.21295 1.01905 0.89824 0.96715 1.19168 0.88819 0.94474 0.99565 1.68103 1.39684 0.99185 1.13126 1.23593 0.93130 0.96003 0.91575 1.22296 0.95191 1.00421 1.00532 1.21673 1.01038 0.92443 0.95147 1.18727 0.94427 0.94133 1.01726 1.22135 0.99371 0.97896 0.82203 1.22458 0.98273 1.00144 0.97563 1.20412 0.91542 0.95775 0.84795 0.92776 1.42800 1.78539 1.09986 1.07669 1.19016 1.33732 0.94689 0.87469 0.91851 1.25354 1.02733 1.01677 0.95447 1.69856 1.54500 1.37573 1.01512 0.85562 0.78610 0.81835 0.76657 1.20526 1.22681 1.18402 0.92043 0.93677 0.91173 0.89255 0.89300 0.82408 0.80619 0.82542 0.78733 0.81522 0.85377 0.88026 0.88631 0.91550 0.93563 0.80563 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.03 71.98 0.65 -3.04 16 2 C -0.10 -2.94 2.46 -10.71 -0.03 -2.97 16 3 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.13 3.08 5.71 86.36 0.49 3.57 16 5 N -0.60 -14.61 2.97 -822.63 -2.45 -17.06 16 6 C 0.56 15.25 6.45 86.70 0.56 15.81 16 7 O -0.57 -18.75 15.24 -4.00 -0.06 -18.82 16 8 C -0.13 -2.99 4.89 -19.89 -0.10 -3.09 16 9 C -0.07 -1.21 7.42 22.56 0.17 -1.05 16 10 C -0.10 -1.30 9.92 21.97 0.22 -1.09 16 11 C -0.08 -1.37 9.96 22.40 0.22 -1.15 16 12 C 0.10 2.34 6.60 40.27 0.27 2.61 16 13 N -0.49 -11.13 10.34 -188.69 -1.95 -13.09 16 14 C 0.13 2.29 11.15 85.07 0.95 3.24 16 15 C -0.16 -3.03 10.03 22.17 0.22 -2.81 16 16 C -0.08 -1.88 9.31 22.45 0.21 -1.67 16 17 C -0.09 -2.21 5.76 -21.10 -0.12 -2.33 16 18 C 0.11 2.38 5.56 86.36 0.48 2.86 16 19 C -0.14 -4.39 5.66 30.67 0.17 -4.21 16 20 C 0.18 6.24 2.19 45.02 0.10 6.34 16 21 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 22 N -0.75 -32.79 4.21 -322.83 -1.36 -34.15 16 23 C -0.22 -11.77 10.41 84.03 0.87 -10.90 16 24 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 25 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 26 N -0.98 -61.74 13.97 21.65 0.30 -61.44 16 27 Si 0.94 45.01 27.74 68.60 1.90 46.91 16 28 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 29 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 30 H -0.26 -11.34 6.52 99.48 0.65 -10.69 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.44 7.37 -2.39 -0.02 1.42 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 2.28 7.03 -2.39 -0.02 2.26 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.16 1.91 7.40 -2.91 -0.02 1.89 16 37 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.13 3.41 6.53 -2.91 -0.02 3.39 16 42 H 0.10 1.99 4.76 -2.39 -0.01 1.98 16 43 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 2.24 8.14 -2.38 -0.02 2.23 16 45 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.36 15.76 5.37 -92.71 -0.50 15.26 16 47 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -74.43 375.36 2.63 -71.80 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.43 Total: 28.72 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.80 Total: -2.89 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -5.45 Total: -125.73 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.06 Total: -18.82 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Total: -74.43 2.63 -71.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036124937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.610 kcal (2) G-P(sol) polarization free energy of solvation -74.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds