Wall clock time and date at job start Tue Mar 31 2020 22:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.52221 * 2 1 4 4 C 1.53194 * 109.49734 * 120.07813 * 2 1 3 5 5 N 1.46931 * 108.77160 * 174.58604 * 4 2 1 6 6 C 1.34779 * 120.62858 * 126.37570 * 5 4 2 7 7 O 1.21589 * 120.00123 * 354.31937 * 6 5 4 8 8 C 1.47546 * 120.00099 * 174.32689 * 6 5 4 9 9 C 1.38702 * 120.38697 * 305.84776 * 8 6 5 10 10 C 1.38970 * 120.53635 * 179.76487 * 9 8 6 11 11 C 1.36207 * 121.23833 * 0.49744 * 10 9 8 12 12 C 1.40712 * 120.20126 * 359.76567 * 11 10 9 13 13 N 1.33688 * 120.94742 * 180.02562 * 12 11 10 14 14 C 1.31064 * 121.34394 * 179.97438 * 13 12 11 15 15 C 1.39347 * 121.70992 * 0.03097 * 14 13 12 16 16 C 1.36678 * 119.86064 * 359.96643 * 15 14 13 17 17 C 1.40470 * 118.17070 * 0.02562 * 16 15 14 18 18 C 1.46919 * 118.74063 * 306.39171 * 5 4 2 19 19 C 1.53190 * 108.77677 * 53.61353 * 18 5 4 20 20 C 1.53038 * 109.49875 * 239.91782 * 2 1 3 21 21 H 1.09004 * 109.46006 * 58.66445 * 20 2 1 22 22 N 1.46495 * 109.46016 * 298.70429 * 20 2 1 23 23 C 1.36936 * 120.00220 * 154.93179 * 22 20 2 24 24 H 1.07998 * 119.99981 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00558 * 179.97438 * 23 22 20 26 26 N 1.31633 * 119.99493 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00592 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46772 * 60.00349 * 27 25 23 29 29 H 1.48503 * 109.47256 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47220 * 300.00412 * 27 25 23 31 31 H 1.09002 * 109.47162 * 180.08497 * 1 2 3 32 32 H 1.08999 * 109.47414 * 300.08009 * 1 2 3 33 33 H 1.08999 * 109.47435 * 60.07936 * 1 2 3 34 34 H 1.09001 * 109.58541 * 54.80441 * 4 2 1 35 35 H 1.08998 * 109.70903 * 294.44064 * 4 2 1 36 36 H 1.08002 * 119.73022 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.37961 * 180.28837 * 10 9 8 38 38 H 1.07994 * 119.89853 * 179.74135 * 11 10 9 39 39 H 1.07996 * 119.14879 * 179.97438 * 14 13 12 40 40 H 1.07994 * 120.06812 * 179.97438 * 15 14 13 41 41 H 1.07999 * 120.90938 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.59064 * 293.82483 * 18 5 4 43 43 H 1.09001 * 109.58822 * 173.40131 * 18 5 4 44 44 H 1.09003 * 109.49651 * 185.41553 * 19 18 5 45 45 H 1.08991 * 109.52674 * 65.33296 * 19 18 5 46 46 H 0.97003 * 120.00456 * 334.92816 * 22 20 2 47 47 H 0.96995 * 119.99693 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8290 1.1695 6 6 4.2812 -0.3855 2.1779 7 8 3.7805 0.2000 3.1186 8 6 5.7389 -0.6104 2.1402 9 6 6.2473 -1.8895 1.9691 10 6 7.6197 -2.1041 1.9283 11 6 8.5002 -1.0738 2.0642 12 6 8.0299 0.2399 2.2454 13 7 8.8808 1.2623 2.3799 14 6 8.4513 2.4891 2.5485 15 6 7.0913 2.7888 2.5965 16 6 6.1689 1.7888 2.4653 17 6 6.6352 0.4761 2.2847 18 6 4.1052 -1.4266 -0.0307 19 6 3.5709 -0.6950 -1.2660 20 6 2.0408 -0.7231 -1.2483 21 1 1.6582 -0.2245 -2.1389 22 7 1.5783 -2.1130 -1.2307 23 6 1.4468 -2.8058 -2.4046 24 1 1.6836 -2.3273 -3.3434 25 6 1.0091 -4.1230 -2.3880 26 7 0.7200 -4.7060 -1.2438 27 14 0.8291 -5.0678 -3.9893 28 1 2.1447 -5.1356 -4.6745 29 1 0.3489 -6.4432 -3.7013 30 1 -0.1501 -4.3754 -4.8651 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8892 33 1 -0.3634 0.5126 -0.8907 34 1 1.6053 -1.7216 1.2980 35 1 1.7637 -0.1601 2.1403 36 1 5.5711 -2.7249 1.8633 37 1 7.9952 -3.1072 1.7895 38 1 9.5625 -1.2659 2.0333 39 1 9.1700 3.2882 2.6538 40 1 6.7668 3.8092 2.7370 41 1 5.1108 2.0020 2.4996 42 1 3.8375 -2.4818 -0.0868 43 1 5.1896 -1.3246 0.0138 44 1 3.9334 -1.1897 -2.1671 45 1 3.9159 0.3388 -1.2547 46 1 1.3653 -2.5428 -0.3876 47 1 0.4138 -5.6263 -1.2322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036124938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:44 Heat of formation + Delta-G solvation = 35.380063 kcal Electronic energy + Delta-G solvation = -29853.561731 eV Core-core repulsion = 26001.328154 eV Total energy + Delta-G solvation = -3852.233577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.24799 -39.85996 -37.82980 -37.02049 -34.34293 -33.62288 -32.85145 -31.45738 -30.77271 -30.36376 -29.21572 -26.47792 -25.35084 -24.44622 -23.73516 -23.54530 -22.77836 -21.71223 -19.83970 -18.61368 -18.23159 -17.39373 -17.25550 -17.07290 -16.40907 -15.79354 -15.13769 -14.80764 -14.67293 -14.43740 -14.37192 -14.18552 -14.02052 -13.72470 -13.37838 -13.32636 -13.23402 -12.76266 -12.57054 -12.32661 -12.15259 -11.98626 -11.56560 -11.54396 -11.38711 -11.22026 -10.93238 -10.82708 -10.71395 -10.54498 -10.51714 -10.25852 -10.05743 -9.89088 -9.60087 -9.49333 -9.00827 -8.95796 -8.43408 -8.28921 -7.02549 -5.83435 -3.12039 0.06235 0.62411 1.64914 2.55529 2.83675 3.17099 3.38891 3.44423 3.44944 3.91872 4.06595 4.33102 4.53619 4.54588 4.62961 4.71238 4.79180 4.94255 5.11965 5.14364 5.23630 5.26469 5.31836 5.49293 5.54636 5.59940 5.61732 5.68607 5.76632 5.78084 5.87491 5.87994 6.00197 6.03219 6.12633 6.14198 6.18779 6.27250 6.30078 6.35042 6.45125 6.55907 6.59540 6.64072 6.71499 6.87763 6.94324 7.57246 7.64256 7.68444 8.20494 8.35153 9.46791 10.02804 10.38064 11.38849 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.003244 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.317957 B = 8630.104631 C = 9527.747848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.557 3.443 7 O -0.545 6.545 8 C -0.096 4.096 9 C -0.077 4.077 10 C -0.102 4.102 11 C -0.079 4.079 12 C 0.122 3.878 13 N -0.475 5.475 14 C 0.131 3.869 15 C -0.177 4.177 16 C -0.047 4.047 17 C -0.070 4.070 18 C 0.110 3.890 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.933 5.933 27 Si 0.905 3.095 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.160 0.840 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.827 11.534 6.847 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.004 4.004 5 N -0.321 5.321 6 C 0.345 3.655 7 O -0.424 6.424 8 C -0.100 4.100 9 C -0.096 4.096 10 C -0.122 4.122 11 C -0.097 4.097 12 C 0.001 3.999 13 N -0.183 5.183 14 C -0.042 4.042 15 C -0.197 4.197 16 C -0.073 4.073 17 C -0.072 4.072 18 C -0.012 4.012 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.177 0.823 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.404 11.454 7.109 19.011 hybrid contribution -1.049 -0.607 -0.711 1.405 sum 12.355 10.847 6.399 17.642 Atomic orbital electron populations 1.21665 0.94110 1.03235 1.00489 1.21700 0.96578 0.98842 0.95661 0.91624 1.21721 0.78014 1.01817 0.98840 1.48098 1.07211 1.58980 1.17772 1.18153 0.85859 0.78844 0.82675 1.90767 1.74866 1.42165 1.34582 1.19913 0.93097 0.93923 1.03022 1.21490 0.96048 0.96098 0.95967 1.20868 0.92524 0.99787 0.98993 1.20932 1.00736 0.90001 0.98072 1.18793 0.88339 0.93759 0.98963 1.68040 1.37995 0.99706 1.12580 1.22963 0.94276 0.93773 0.93192 1.21937 0.94269 1.00763 1.02690 1.21647 1.01331 0.91341 0.92976 1.18559 0.93516 0.93829 1.01330 1.21880 0.96830 0.99028 0.83508 1.22523 1.00480 0.98627 0.97410 1.20216 0.90717 0.87395 0.94858 0.93068 1.42462 1.78999 1.07680 1.06925 1.19171 1.37395 0.93868 0.86545 0.91311 1.24699 1.02202 0.97167 0.96608 1.69639 1.51619 1.13134 1.23701 0.86313 0.77777 0.79211 0.83125 1.21339 1.21794 1.21366 0.90993 0.93738 0.92760 0.90335 0.89625 0.84382 0.84392 0.84380 0.82311 0.84372 0.83826 0.89453 0.90946 0.90629 0.93398 0.78110 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.05 37.16 0.34 -1.80 16 2 C -0.11 -1.71 2.67 -90.50 -0.24 -1.95 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.93 5.43 -3.71 -0.02 1.91 16 5 N -0.59 -9.32 2.97 -173.99 -0.52 -9.84 16 6 C 0.56 8.96 6.47 -12.46 -0.08 8.87 16 7 O -0.54 -10.02 15.14 5.29 0.08 -9.94 16 8 C -0.10 -1.35 4.63 -104.65 -0.48 -1.84 16 9 C -0.08 -0.94 7.77 -39.14 -0.30 -1.24 16 10 C -0.10 -1.04 9.92 -40.04 -0.40 -1.43 16 11 C -0.08 -0.86 9.96 -39.38 -0.39 -1.25 16 12 C 0.12 1.59 6.60 -84.88 -0.56 1.03 16 13 N -0.48 -5.90 10.34 -10.99 -0.11 -6.02 16 14 C 0.13 1.30 11.15 -17.47 -0.19 1.11 16 15 C -0.18 -1.76 10.04 -39.73 -0.40 -2.16 16 16 C -0.05 -0.60 9.29 -39.31 -0.37 -0.96 16 17 C -0.07 -0.96 5.76 -106.53 -0.61 -1.58 16 18 C 0.11 1.71 5.32 -3.72 -0.02 1.69 16 19 C -0.15 -2.43 5.78 -26.61 -0.15 -2.58 16 20 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -15.99 3.64 -53.39 -0.19 -16.18 16 23 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 24 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 25 C -0.01 -0.29 5.50 -17.42 -0.10 -0.38 16 26 N -0.93 -26.45 13.06 55.49 0.72 -25.73 16 27 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 30 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 31 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.41 6.64 -51.93 -0.34 1.06 16 35 H 0.09 1.39 6.99 -51.93 -0.36 1.03 16 36 H 0.14 1.60 7.76 -52.49 -0.41 1.19 16 37 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.14 1.92 6.48 -52.49 -0.34 1.58 16 42 H 0.09 1.56 7.74 -51.93 -0.40 1.16 16 43 H 0.07 1.01 5.39 -51.93 -0.28 0.73 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.38 9.14 5.93 -40.82 -0.24 8.89 16 47 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -30.44 375.44 -10.23 -40.68 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.54 Total: 10.74 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -4.31 Total: -5.74 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.10 Total: -57.77 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.44 -10.23 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036124938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.057 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds