Wall clock time and date at job start Tue Mar 31 2020 22:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.49375 * 2 1 4 4 C 1.53189 * 109.49421 * 120.06332 * 2 1 3 5 5 N 1.46934 * 108.77340 * 174.58871 * 4 2 1 6 6 C 1.34769 * 120.63352 * 126.41737 * 5 4 2 7 7 O 1.21564 * 119.99836 * 354.12183 * 6 5 4 8 8 C 1.47763 * 120.00445 * 174.12480 * 6 5 4 9 9 C 1.40628 * 119.80769 * 137.89904 * 8 6 5 10 10 C 1.35706 * 120.92183 * 179.77000 * 9 8 6 11 11 C 1.40759 * 120.11008 * 0.48175 * 10 9 8 12 12 N 1.33648 * 120.83065 * 179.77933 * 11 10 9 13 13 C 1.31118 * 121.39276 * 180.02562 * 12 11 10 14 14 C 1.39310 * 121.77531 * 0.02562 * 13 12 11 15 15 C 1.36585 * 119.89921 * 0.02562 * 14 13 12 16 16 C 1.40891 * 118.16186 * 359.97438 * 15 14 13 17 17 C 1.38553 * 119.80098 * 318.17399 * 8 6 5 18 18 C 1.46927 * 118.73543 * 306.39095 * 5 4 2 19 19 C 1.53194 * 108.77632 * 53.61158 * 18 5 4 20 20 C 1.53043 * 109.33845 * 305.34584 * 19 18 5 21 21 H 1.08997 * 109.45731 * 301.36056 * 20 19 18 22 22 N 1.46498 * 109.46059 * 181.39959 * 20 19 18 23 23 C 1.36936 * 119.99633 * 84.99963 * 22 20 19 24 24 H 1.08001 * 120.00581 * 359.97438 * 23 22 20 25 25 C 1.38814 * 119.99987 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99832 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00212 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47148 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46961 * 120.00410 * 27 25 23 30 30 H 1.48503 * 109.47530 * 240.00449 * 27 25 23 31 31 H 1.09000 * 109.46962 * 299.93308 * 1 2 3 32 32 H 1.09000 * 109.46685 * 59.93091 * 1 2 3 33 33 H 1.08993 * 109.46946 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58941 * 54.80356 * 4 2 1 35 35 H 1.08994 * 109.70939 * 294.44390 * 4 2 1 36 36 H 1.07999 * 119.53694 * 359.97438 * 9 8 6 37 37 H 1.07998 * 119.94503 * 180.25736 * 10 9 8 38 38 H 1.08004 * 119.11452 * 179.97438 * 13 12 11 39 39 H 1.07991 * 120.05325 * 180.02562 * 14 13 12 40 40 H 1.08003 * 120.92022 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.29986 * 359.95822 * 17 8 6 42 42 H 1.08997 * 109.59272 * 293.82130 * 18 5 4 43 43 H 1.08999 * 109.58776 * 173.39553 * 18 5 4 44 44 H 1.08997 * 109.49568 * 65.31175 * 19 18 5 45 45 H 1.08999 * 109.50054 * 185.37928 * 19 18 5 46 46 H 0.96994 * 120.00416 * 264.99927 * 22 20 19 47 47 H 0.96995 * 120.00128 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5046 -0.8287 1.1699 6 6 4.2811 -0.3858 2.1784 7 8 3.7809 0.2023 3.1174 8 6 5.7404 -0.6150 2.1429 9 6 6.6190 0.4126 2.5301 10 6 7.9629 0.2252 2.5106 11 6 8.4981 -1.0068 2.0897 12 7 9.8194 -1.2055 2.0607 13 6 10.3298 -2.3483 1.6701 14 6 9.5251 -3.4112 1.2658 15 6 8.1659 -3.2761 1.2699 16 6 7.6212 -2.0466 1.6902 17 6 6.2352 -1.8391 1.7230 18 6 4.1053 -1.4267 -0.0303 19 6 3.5709 -0.6953 -1.2658 20 6 2.0408 -0.7234 -1.2490 21 1 1.6968 -1.7575 -1.2357 22 7 1.5272 -0.0537 -2.4465 23 6 1.3965 -0.7509 -3.6178 24 1 1.6724 -1.7943 -3.6590 25 6 0.9093 -0.1166 -4.7524 26 7 0.5736 1.1550 -4.7024 27 14 0.7317 -1.0674 -6.3504 28 1 1.1745 -2.4697 -6.1439 29 1 -0.6905 -1.0557 -6.7779 30 1 1.5692 -0.4329 -7.3998 31 1 -0.3633 0.5128 0.8906 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6053 -1.7212 1.2985 35 1 1.7637 -0.1595 2.1403 36 1 6.2185 1.3630 2.8504 37 1 8.6231 1.0238 2.8152 38 1 11.4031 -2.4687 1.6607 39 1 9.9751 -4.3406 0.9498 40 1 7.5265 -4.0892 0.9594 41 1 5.5593 -2.6259 1.4224 42 1 3.8376 -2.4818 -0.0861 43 1 5.1896 -1.3246 0.0141 44 1 3.9160 0.3385 -1.2541 45 1 3.9339 -1.1899 -2.1667 46 1 1.2798 0.8834 -2.4097 47 1 0.2335 1.5984 -5.4952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036160347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:19 Heat of formation + Delta-G solvation = 35.132446 kcal Electronic energy + Delta-G solvation = -29028.549262 eV Core-core repulsion = 25176.304948 eV Total energy + Delta-G solvation = -3852.244314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.28756 -40.11569 -37.89127 -36.87186 -34.75921 -33.85485 -32.91917 -31.53545 -30.97007 -30.44363 -29.34308 -26.59508 -25.50428 -24.59715 -23.92178 -22.97271 -22.34015 -21.69368 -20.48125 -19.42531 -18.42110 -17.56133 -17.18126 -17.09620 -16.41595 -15.78109 -15.24032 -15.00447 -14.75991 -14.59599 -14.37570 -14.23898 -13.97947 -13.78217 -13.45593 -13.42553 -13.35230 -12.99184 -12.57235 -12.48957 -12.32203 -11.97575 -11.78708 -11.65039 -11.56218 -11.20429 -10.98526 -10.91527 -10.83508 -10.67338 -10.44240 -10.19775 -9.97171 -9.82458 -9.75642 -9.65857 -9.11339 -8.95423 -8.60749 -8.49013 -7.00010 -5.81112 -3.09946 -0.06359 0.40375 1.59889 2.25447 2.82059 3.08653 3.39235 3.44680 3.47274 3.78122 3.93640 4.19657 4.29497 4.37567 4.52310 4.54185 4.72593 4.74154 4.95057 5.01418 5.11108 5.20690 5.22139 5.31252 5.41328 5.47679 5.52424 5.54825 5.60241 5.64942 5.69718 5.73658 5.90384 5.92699 6.00901 6.04654 6.10576 6.15326 6.26778 6.33217 6.39868 6.43443 6.49750 6.59236 6.76809 6.88538 7.01253 7.39437 7.55795 7.65175 8.09168 8.36997 9.48549 10.05920 10.40690 11.41400 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012777 B = 0.002869 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.983250 B = 9758.819852 C =11204.527279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.598 5.598 6 C 0.557 3.443 7 O -0.539 6.539 8 C -0.115 4.115 9 C -0.055 4.055 10 C -0.098 4.098 11 C 0.140 3.860 12 N -0.477 5.477 13 C 0.137 3.863 14 C -0.180 4.180 15 C -0.048 4.048 16 C -0.111 4.111 17 C -0.058 4.058 18 C 0.097 3.903 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.574 -8.932 14.790 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.330 5.330 6 C 0.345 3.655 7 O -0.417 6.417 8 C -0.118 4.118 9 C -0.076 4.076 10 C -0.116 4.116 11 C 0.019 3.981 12 N -0.185 5.185 13 C -0.035 4.035 14 C -0.200 4.200 15 C -0.074 4.074 16 C -0.113 4.113 17 C -0.077 4.077 18 C -0.026 4.026 19 C -0.193 4.193 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.579 5.579 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.177 0.823 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.721 -7.981 15.408 23.415 hybrid contribution -0.605 -0.934 -1.432 1.813 sum 15.116 -8.915 13.976 22.435 Atomic orbital electron populations 1.21658 0.94029 1.01774 1.01911 1.21754 0.96639 1.00129 0.94492 0.91157 1.21764 0.77860 1.00975 0.99625 1.48085 1.07281 1.59895 1.17705 1.18260 0.86025 0.78668 0.82517 1.90777 1.74815 1.41417 1.34718 1.19961 0.93717 0.95444 1.02723 1.20853 0.92280 0.98790 0.95670 1.20701 0.94836 0.95922 1.00161 1.18996 0.88837 0.93840 0.96442 1.68072 1.12560 1.23357 1.14541 1.23035 1.00781 0.87961 0.91758 1.21903 0.94477 1.01057 1.02587 1.21563 0.95770 0.95800 0.94219 1.18753 0.94237 0.95452 1.02824 1.21569 0.93833 0.96861 0.95470 1.22198 0.98300 0.97289 0.84791 1.22701 1.00433 1.00510 0.95670 1.20200 0.90272 0.95677 0.86455 0.93413 1.42409 1.76483 1.11409 1.05748 1.19246 1.35889 0.94082 0.87702 0.91203 1.24735 1.02059 0.96018 0.98061 1.69666 1.49994 1.09476 1.28797 0.86159 0.77333 0.78848 0.84075 1.20601 1.21906 1.21925 0.93777 0.90711 0.93047 0.91356 0.89181 0.84305 0.84074 0.82275 0.84283 0.84026 0.84139 0.91314 0.89863 0.92122 0.90510 0.78197 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.03 37.16 0.34 -1.82 16 2 C -0.11 -1.77 2.46 -90.47 -0.22 -2.00 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.12 1.69 5.73 -3.71 -0.02 1.67 16 5 N -0.60 -8.21 2.97 -173.91 -0.52 -8.72 16 6 C 0.56 8.10 7.28 -12.37 -0.09 8.01 16 7 O -0.54 -9.43 16.36 5.31 0.09 -9.35 16 8 C -0.12 -1.42 5.08 -104.99 -0.53 -1.95 16 9 C -0.06 -0.64 9.54 -39.59 -0.38 -1.02 16 10 C -0.10 -1.06 9.95 -39.54 -0.39 -1.45 16 11 C 0.14 1.60 6.61 -84.78 -0.56 1.04 16 12 N -0.48 -5.22 10.33 -10.92 -0.11 -5.33 16 13 C 0.14 1.09 11.14 -17.46 -0.19 0.89 16 14 C -0.18 -1.20 10.03 -39.78 -0.40 -1.60 16 15 C -0.05 -0.37 9.89 -39.18 -0.39 -0.75 16 16 C -0.11 -1.13 5.74 -106.82 -0.61 -1.74 16 17 C -0.06 -0.60 7.13 -38.74 -0.28 -0.87 16 18 C 0.10 1.22 4.92 -3.71 -0.02 1.20 16 19 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 20 C 0.18 3.38 2.20 -67.86 -0.15 3.23 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -16.96 4.41 -53.35 -0.24 -17.19 16 23 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 27 Si 0.90 21.77 29.55 -169.99 -5.02 16.74 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.40 7.37 -51.93 -0.38 1.02 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 36 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.16 0.75 8.06 -52.48 -0.42 0.32 16 39 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 41 H 0.14 1.20 6.72 -52.49 -0.35 0.84 16 42 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 43 H 0.08 0.95 4.83 -51.93 -0.25 0.70 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.38 9.83 7.51 -40.82 -0.31 9.52 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -32.47 380.73 -10.33 -42.80 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.69 Total: 8.65 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -4.30 Total: -6.66 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.14 Total: -57.93 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.47 -10.33 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036160347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.932 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds