Wall clock time and date at job start Tue Mar 31 2020 22:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.51892 * 2 1 4 4 C 1.53187 * 109.49848 * 239.91726 * 2 1 3 5 5 N 1.46922 * 108.78013 * 185.41137 * 4 2 1 6 6 C 1.34776 * 120.63561 * 233.58946 * 5 4 2 7 7 O 1.21560 * 120.00019 * 5.85247 * 6 5 4 8 8 C 1.47760 * 120.00005 * 185.85676 * 6 5 4 9 9 C 1.40633 * 119.80837 * 42.07744 * 8 6 5 10 10 C 1.35699 * 120.92547 * 180.02562 * 9 8 6 11 11 C 1.40764 * 120.11041 * 359.95369 * 10 9 8 12 12 N 1.33646 * 120.82857 * 180.02562 * 11 10 9 13 13 C 1.31122 * 121.39329 * 179.97438 * 12 11 10 14 14 C 1.39314 * 121.76806 * 0.04669 * 13 12 11 15 15 C 1.36583 * 119.90615 * 359.97112 * 14 13 12 16 16 C 1.40888 * 118.15657 * 0.02562 * 15 14 13 17 17 C 1.38560 * 119.80550 * 221.77925 * 8 6 5 18 18 C 1.46929 * 118.73432 * 53.85727 * 5 4 2 19 19 C 1.53620 * 108.54844 * 306.10005 * 18 5 4 20 20 C 1.53038 * 109.49728 * 120.08107 * 2 1 3 21 21 H 1.09004 * 109.45572 * 301.33404 * 20 2 1 22 22 N 1.46500 * 109.46200 * 61.30668 * 20 2 1 23 23 C 1.36932 * 120.00267 * 204.99687 * 22 20 2 24 24 H 1.08004 * 120.00119 * 0.02562 * 23 22 20 25 25 C 1.38809 * 120.00646 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99621 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 120.00772 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46973 * 59.99460 * 27 25 23 29 29 H 1.48500 * 109.47337 * 180.02562 * 27 25 23 30 30 H 1.48507 * 109.46789 * 300.00214 * 27 25 23 31 31 H 1.08999 * 109.46663 * 180.08309 * 1 2 3 32 32 H 1.08996 * 109.46901 * 300.07751 * 1 2 3 33 33 H 1.08996 * 109.46740 * 60.08615 * 1 2 3 34 34 H 1.09005 * 109.58509 * 65.62524 * 4 2 1 35 35 H 1.09004 * 109.70609 * 305.27430 * 4 2 1 36 36 H 1.08000 * 119.53574 * 359.97438 * 9 8 6 37 37 H 1.08004 * 119.94570 * 179.97438 * 10 9 8 38 38 H 1.08001 * 119.11711 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.04469 * 180.02562 * 14 13 12 40 40 H 1.07994 * 120.92178 * 179.97438 * 15 14 13 41 41 H 1.07992 * 120.29259 * 0.02562 * 17 8 6 42 42 H 1.09004 * 109.58508 * 65.93533 * 18 5 4 43 43 H 1.09001 * 109.58493 * 186.35312 * 18 5 4 44 44 H 1.09007 * 109.62986 * 294.86662 * 19 18 5 45 45 H 1.08992 * 109.46206 * 174.73995 * 19 18 5 46 46 H 0.96999 * 120.00008 * 25.00555 * 22 20 2 47 47 H 0.97000 * 120.00500 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1696 6 6 4.2812 -0.3864 -2.1783 7 8 3.7810 0.2011 -3.1176 8 6 5.7405 -0.6153 -2.1425 9 6 6.2429 -1.8593 -1.7207 10 6 7.5788 -2.0939 -1.6785 11 6 8.4850 -1.0868 -2.0605 12 7 9.8035 -1.3025 -2.0251 13 6 10.6575 -0.3725 -2.3789 14 6 10.2371 0.8845 -2.8078 15 6 8.9033 1.1727 -2.8679 16 6 7.9889 0.1709 -2.4870 17 6 6.6058 0.3949 -2.5305 18 6 4.1051 -1.4317 0.0284 19 6 3.5709 -0.6950 1.2660 20 6 2.0409 -0.7231 1.2483 21 1 1.6582 -0.2244 2.1389 22 7 1.5786 -2.1131 1.2307 23 6 1.4485 -2.8064 2.4044 24 1 1.6862 -2.3283 3.3432 25 6 1.0110 -4.1236 2.3877 26 7 0.7217 -4.7065 1.2436 27 14 0.8328 -5.0691 3.9888 28 1 -0.1455 -4.3773 4.8659 29 1 0.3538 -6.4449 3.7006 30 1 2.1493 -5.1369 4.6727 31 1 -0.3632 -1.0277 0.0015 32 1 -0.3633 0.5150 0.8893 33 1 -0.3633 0.5125 -0.8907 34 1 1.7638 -0.1579 -2.1389 35 1 1.6054 -1.7216 -1.3005 36 1 5.5558 -2.6385 -1.4254 37 1 7.9473 -3.0550 -1.3516 38 1 11.7152 -0.5867 -2.3364 39 1 10.9648 1.6298 -3.0932 40 1 8.5593 2.1418 -3.1976 41 1 6.2183 1.3481 -2.8584 42 1 3.8340 -2.4861 0.0820 43 1 5.1897 -1.3332 -0.0175 44 1 3.9160 0.3389 1.2540 45 1 3.9334 -1.1891 2.1673 46 1 1.3648 -2.5425 0.3876 47 1 0.4157 -5.6269 1.2318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036160348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:22 Heat of formation + Delta-G solvation = 37.192402 kcal Electronic energy + Delta-G solvation = -29367.218233 eV Core-core repulsion = 25515.063245 eV Total energy + Delta-G solvation = -3852.154988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.17167 -40.03447 -37.90195 -36.81007 -34.35867 -33.74245 -32.90644 -31.43697 -30.86051 -30.29847 -29.18621 -26.64745 -25.38717 -24.38034 -23.91595 -23.39626 -22.35733 -21.67486 -20.37693 -18.65554 -18.31113 -17.42512 -17.30325 -17.02574 -16.13821 -15.62481 -15.15773 -14.85562 -14.63396 -14.47279 -14.40213 -14.12347 -14.00110 -13.80140 -13.39803 -13.32825 -13.31540 -12.94694 -12.56616 -12.30896 -12.23114 -11.98656 -11.64859 -11.50701 -11.31293 -11.20893 -10.92068 -10.84592 -10.80283 -10.51798 -10.46306 -10.24122 -9.86597 -9.81400 -9.70873 -9.57255 -9.01011 -8.90119 -8.52516 -8.25883 -7.00502 -5.81470 -3.10022 0.04962 0.46726 1.70428 2.35177 3.00703 3.23498 3.40430 3.45894 3.46476 3.86885 4.01750 4.31733 4.43795 4.45855 4.55410 4.59891 4.81792 4.86649 4.99193 5.18497 5.21829 5.28829 5.33953 5.49894 5.51998 5.56516 5.62084 5.68708 5.74054 5.78361 5.79581 5.89602 6.00431 6.05039 6.06185 6.12408 6.20669 6.24214 6.30036 6.37610 6.47586 6.52295 6.61028 6.66156 6.74003 6.90189 6.97167 7.61934 7.63461 7.66018 8.26263 8.37069 9.48704 10.04913 10.40184 11.40808 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.002996 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.448264 B = 9344.858006 C =10599.711918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.592 5.592 6 C 0.555 3.445 7 O -0.547 6.547 8 C -0.115 4.115 9 C -0.072 4.072 10 C -0.098 4.098 11 C 0.140 3.860 12 N -0.476 5.476 13 C 0.135 3.865 14 C -0.182 4.182 15 C -0.048 4.048 16 C -0.111 4.111 17 C -0.041 4.041 18 C 0.106 3.894 19 C -0.149 4.149 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.877 11.858 -7.527 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.323 5.323 6 C 0.343 3.657 7 O -0.426 6.426 8 C -0.118 4.118 9 C -0.092 4.092 10 C -0.117 4.117 11 C 0.019 3.981 12 N -0.184 5.184 13 C -0.038 4.038 14 C -0.202 4.202 15 C -0.074 4.074 16 C -0.113 4.113 17 C -0.061 4.061 18 C -0.016 4.016 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.753 11.196 -7.531 20.742 hybrid contribution -0.356 0.042 0.479 0.598 sum 15.397 11.238 -7.052 20.325 Atomic orbital electron populations 1.21667 0.94164 1.03223 1.00460 1.21697 0.96535 0.98862 0.95676 0.91602 1.21701 0.78081 1.01731 0.98813 1.48048 1.07222 1.59092 1.17917 1.18237 0.86006 0.78847 0.82571 1.90757 1.74901 1.42197 1.34737 1.19974 0.93713 0.95447 1.02714 1.21178 0.95815 0.96342 0.95839 1.20713 0.91647 0.99001 1.00302 1.18999 0.90489 0.92204 0.96440 1.68071 1.02087 1.33392 1.14824 1.23017 0.99740 0.88940 0.92094 1.21881 0.96658 0.98900 1.02770 1.21541 0.92981 0.98440 0.94438 1.18767 0.94323 0.95353 1.02820 1.21296 0.90799 0.98962 0.95010 1.22142 0.96935 0.98928 0.83640 1.22604 1.00441 0.98614 0.97385 1.20219 0.90752 0.87379 0.94856 0.93101 1.42464 1.79005 1.07672 1.06934 1.19164 1.37356 0.93843 0.86553 0.91330 1.24697 1.02240 0.97177 0.96592 1.69634 1.51630 1.13130 1.23692 0.86316 0.77769 0.79217 0.83142 1.21384 1.21805 1.21344 0.91001 0.92791 0.93746 0.89678 0.90389 0.83943 0.83988 0.82342 0.84412 0.84178 0.84327 0.89410 0.90486 0.93315 0.90677 0.78108 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.06 37.16 0.34 -1.83 16 2 C -0.11 -1.73 2.67 -90.50 -0.24 -1.97 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.97 5.42 -3.72 -0.02 1.95 16 5 N -0.59 -9.44 2.97 -173.65 -0.52 -9.96 16 6 C 0.56 8.97 7.28 -12.37 -0.09 8.88 16 7 O -0.55 -10.26 16.35 5.31 0.09 -10.17 16 8 C -0.12 -1.58 5.06 -104.98 -0.53 -2.11 16 9 C -0.07 -0.90 7.28 -39.59 -0.29 -1.19 16 10 C -0.10 -1.18 9.95 -39.54 -0.39 -1.57 16 11 C 0.14 1.74 6.61 -84.78 -0.56 1.18 16 12 N -0.48 -5.63 10.33 -10.92 -0.11 -5.74 16 13 C 0.13 1.16 11.15 -17.45 -0.19 0.96 16 14 C -0.18 -1.32 10.03 -39.78 -0.40 -1.72 16 15 C -0.05 -0.41 9.89 -39.18 -0.39 -0.80 16 16 C -0.11 -1.26 5.74 -106.82 -0.61 -1.88 16 17 C -0.04 -0.50 9.39 -38.73 -0.36 -0.86 16 18 C 0.11 1.64 4.69 -3.49 -0.02 1.63 16 19 C -0.15 -2.43 5.79 -26.39 -0.15 -2.59 16 20 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -16.08 3.63 -53.39 -0.19 -16.28 16 23 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 24 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.62 13.06 55.49 0.72 -25.90 16 27 Si 0.90 21.53 29.55 -169.99 -5.02 16.51 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 31 H 0.07 1.31 7.53 -51.93 -0.39 0.92 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 35 H 0.08 1.41 6.65 -51.93 -0.35 1.07 16 36 H 0.14 1.75 6.72 -52.49 -0.35 1.40 16 37 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.09 1.57 7.72 -51.93 -0.40 1.17 16 43 H 0.08 1.06 4.82 -51.93 -0.25 0.81 16 44 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.38 9.20 5.93 -40.82 -0.24 8.96 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -30.96 376.75 -10.23 -41.19 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.54 Total: 10.15 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -4.33 Total: -5.48 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.10 Total: -57.88 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.96 -10.23 -41.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036160348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.381 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds