Wall clock time and date at job start Tue Mar 31 2020 22:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.50048 * 2 1 4 4 C 1.52761 * 109.59638 * 240.04966 * 2 1 3 5 5 N 1.46918 * 109.01218 * 185.54064 * 4 2 1 6 6 C 1.34778 * 120.62884 * 233.57968 * 5 4 2 7 7 O 1.21561 * 119.99913 * 5.57547 * 6 5 4 8 8 C 1.47762 * 120.00074 * 185.57014 * 6 5 4 9 9 C 1.40640 * 119.80751 * 221.82526 * 8 6 5 10 10 C 1.35697 * 120.92365 * 180.02562 * 9 8 6 11 11 C 1.40752 * 120.11492 * 0.02562 * 10 9 8 12 12 N 1.33646 * 120.83546 * 179.97438 * 11 10 9 13 13 C 1.31122 * 121.39648 * 180.02562 * 12 11 10 14 14 C 1.39309 * 121.76938 * 0.27318 * 13 12 11 15 15 C 1.36591 * 119.90493 * 359.42140 * 14 13 12 16 16 C 1.40896 * 118.15425 * 0.57757 * 15 14 13 17 17 C 1.38552 * 119.80550 * 41.84911 * 8 6 5 18 18 C 1.46921 * 118.74295 * 53.30363 * 5 4 2 19 19 C 1.53198 * 108.77763 * 306.64540 * 18 5 4 20 20 C 1.53041 * 109.30898 * 54.63064 * 19 18 5 21 21 H 1.09006 * 109.45751 * 58.65694 * 20 19 18 22 22 N 1.46501 * 109.45835 * 178.61527 * 20 19 18 23 23 C 1.36932 * 120.00257 * 275.00047 * 22 20 19 24 24 H 1.08004 * 119.99851 * 0.02562 * 23 22 20 25 25 C 1.38816 * 120.00245 * 179.97438 * 23 22 20 26 26 N 1.31616 * 119.99790 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00006 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47280 * 0.02562 * 27 25 23 29 29 H 1.48508 * 109.47016 * 120.00200 * 27 25 23 30 30 H 1.48501 * 109.47290 * 240.00083 * 27 25 23 31 31 H 1.09006 * 109.47222 * 299.93628 * 1 2 3 32 32 H 1.09005 * 109.46815 * 59.93574 * 1 2 3 33 33 H 1.08999 * 109.47079 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.51347 * 65.64941 * 4 2 1 35 35 H 1.09003 * 109.42330 * 305.37062 * 4 2 1 36 36 H 1.08003 * 119.53238 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.94137 * 179.97438 * 10 9 8 38 38 H 1.08004 * 119.11475 * 179.97438 * 13 12 11 39 39 H 1.07997 * 120.05144 * 179.71810 * 14 13 12 40 40 H 1.07997 * 120.92320 * 180.29133 * 15 14 13 41 41 H 1.07994 * 120.29550 * 0.02562 * 17 8 6 42 42 H 1.09004 * 109.59006 * 66.43312 * 18 5 4 43 43 H 1.09004 * 109.59239 * 186.85838 * 18 5 4 44 44 H 1.09001 * 109.50153 * 174.58554 * 19 18 5 45 45 H 1.09000 * 109.49436 * 294.68721 * 19 18 5 46 46 H 0.97005 * 120.00118 * 95.00781 * 22 20 19 47 47 H 0.96997 * 119.99828 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0423 -0.7185 -1.2469 5 7 3.5053 -0.8283 -1.1689 6 6 4.2819 -0.3845 -2.1770 7 8 3.7817 0.2031 -3.1163 8 6 5.7415 -0.6121 -2.1406 9 6 6.6191 0.4145 -2.5327 10 6 7.9632 0.2300 -2.5085 11 6 8.4995 -1.0015 -2.0878 12 7 9.8210 -1.1991 -2.0589 13 6 10.3324 -2.3419 -1.6694 14 6 9.5283 -3.4079 -1.2721 15 6 8.1692 -3.2723 -1.2713 16 6 7.6234 -2.0430 -1.6909 17 6 6.2374 -1.8358 -1.7207 18 6 4.1059 -1.4255 0.0316 19 6 3.5708 -0.6939 1.2667 20 6 2.0408 -0.7227 1.2486 21 1 1.6972 -1.7571 1.2355 22 7 1.5258 -0.0527 2.4453 23 6 1.3944 -0.7492 3.6169 24 1 1.6707 -1.7925 3.6588 25 6 0.9069 -0.1143 4.7510 26 7 0.5707 1.1572 4.7001 27 14 0.7283 -1.0644 6.3494 28 1 1.1719 -2.4666 6.1440 29 1 1.5656 -0.4295 7.3988 30 1 -0.6940 -1.0521 6.7762 31 1 -0.3634 0.5129 0.8906 32 1 -0.3633 0.5149 -0.8895 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7653 -0.1497 -2.1345 35 1 1.6032 -1.7149 -1.2973 36 1 6.2175 1.3628 -2.8583 37 1 8.6226 1.0291 -2.8135 38 1 11.4058 -2.4616 -1.6608 39 1 9.9790 -4.3386 -0.9607 40 1 7.5304 -4.0864 -0.9621 41 1 5.5621 -2.6234 -1.4207 42 1 3.8387 -2.4807 0.0877 43 1 5.1902 -1.3229 -0.0125 44 1 3.9334 -1.1883 2.1680 45 1 3.9154 0.3401 1.2547 46 1 1.2779 0.8844 2.4078 47 1 0.2298 1.6008 5.4924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036160349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:25 Heat of formation + Delta-G solvation = 15.839311 kcal Electronic energy + Delta-G solvation = -29030.174467 eV Core-core repulsion = 25177.093540 eV Total energy + Delta-G solvation = -3853.080927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.10326 -41.13240 -39.16363 -37.74053 -36.24621 -34.74728 -34.28987 -33.09053 -31.75852 -31.26370 -30.95006 -27.74442 -26.90149 -25.68188 -24.81641 -24.23044 -23.28982 -22.96209 -21.63231 -20.68557 -19.24935 -19.04106 -18.45144 -17.92394 -17.40373 -16.79749 -16.63907 -16.22946 -15.72556 -15.61168 -15.44297 -15.33440 -15.24988 -14.99325 -14.91201 -14.30110 -14.26926 -14.00854 -13.97453 -13.67905 -13.20320 -13.14882 -13.03999 -12.88249 -12.78637 -12.58552 -12.48969 -12.42290 -12.08667 -12.06946 -11.83978 -11.68069 -11.54624 -11.15780 -11.09459 -10.84275 -10.48425 -9.88493 -9.70254 -9.30911 -8.95133 -7.90361 -5.17998 -0.77514 -0.31693 0.89268 1.37289 1.49312 1.49523 1.59127 1.79256 2.13662 2.58680 3.06032 3.22363 3.37430 3.43644 3.53474 3.74537 3.79580 3.81568 3.92812 4.00054 4.02760 4.08159 4.09559 4.26854 4.33906 4.36885 4.48615 4.52396 4.65900 4.72059 4.76772 4.78487 4.81465 4.86454 4.93766 4.95848 5.00526 5.04031 5.15832 5.23671 5.25422 5.32210 5.40198 5.48015 5.50138 5.56899 5.62254 5.76900 6.28412 6.31373 6.90993 6.98515 7.37409 8.13598 8.36499 9.33581 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012789 B = 0.002867 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.851173 B = 9763.336599 C =11206.750746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.047 0.953 4 C 0.126 3.874 5 N -0.597 5.597 6 C 0.559 3.441 7 O -0.576 6.576 8 C -0.140 4.140 9 C -0.067 4.067 10 C -0.104 4.104 11 C 0.121 3.879 12 N -0.512 5.512 13 C 0.137 3.863 14 C -0.173 4.173 15 C -0.049 4.049 16 C -0.126 4.126 17 C -0.042 4.042 18 C 0.107 3.893 19 C -0.144 4.144 20 C 0.180 3.820 21 H 0.055 0.945 22 N -0.733 5.733 23 C -0.227 4.227 24 H 0.081 0.919 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.967 3.033 28 H -0.261 1.261 29 H -0.299 1.299 30 H -0.299 1.299 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.190 0.810 39 H 0.177 0.823 40 H 0.173 0.827 41 H 0.164 0.836 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.369 0.631 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.436 -12.770 -15.050 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.122 4.122 3 H 0.066 0.934 4 C 0.004 3.996 5 N -0.328 5.328 6 C 0.349 3.651 7 O -0.457 6.457 8 C -0.143 4.143 9 C -0.088 4.088 10 C -0.123 4.123 11 C 0.000 4.000 12 N -0.221 5.221 13 C -0.035 4.035 14 C -0.192 4.192 15 C -0.075 4.075 16 C -0.128 4.128 17 C -0.061 4.061 18 C -0.015 4.015 19 C -0.185 4.185 20 C 0.072 3.928 21 H 0.073 0.927 22 N -0.371 5.371 23 C -0.359 4.359 24 H 0.099 0.901 25 C -0.271 4.271 26 N -0.624 5.624 27 Si 0.797 3.203 28 H -0.186 1.186 29 H -0.227 1.227 30 H -0.226 1.226 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.207 0.793 39 H 0.194 0.806 40 H 0.191 0.809 41 H 0.181 0.819 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.201 0.799 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.617 -11.876 -15.694 26.414 hybrid contribution -1.014 0.185 1.454 1.782 sum 16.602 -11.691 -14.240 24.802 Atomic orbital electron populations 1.21570 0.93756 1.02223 1.01164 1.21538 0.96826 0.99019 0.94770 0.93397 1.21586 0.78373 1.01833 0.97811 1.48120 1.07090 1.59695 1.17900 1.18591 0.86909 0.77652 0.81979 1.90748 1.75676 1.43126 1.36179 1.19823 0.92203 0.96872 1.05451 1.20838 0.92675 0.98795 0.96446 1.20791 0.94592 0.96567 1.00350 1.19208 0.89615 0.94259 0.96880 1.68094 1.12357 1.25328 1.16335 1.23720 1.02584 0.87371 0.89776 1.22337 0.94090 1.01872 1.00896 1.21984 0.96785 0.95405 0.93279 1.18971 0.94014 0.96426 1.03394 1.21769 0.94355 0.96236 0.93737 1.22232 0.99031 0.98092 0.82184 1.22503 0.98605 0.99785 0.97568 1.20435 0.91443 0.95577 0.85361 0.92711 1.42624 1.76782 1.10858 1.06852 1.19650 1.33380 0.94460 0.88369 0.90137 1.25506 1.03331 0.96901 1.01360 1.69831 1.52191 1.11205 1.29163 0.85149 0.76505 0.78470 0.80126 1.18557 1.22685 1.22625 0.94171 0.91794 0.91912 0.89740 0.88899 0.84894 0.83467 0.79334 0.80567 0.80924 0.81866 0.88114 0.88227 0.91185 0.94370 0.79928 0.94362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.03 71.98 0.65 -3.43 16 2 C -0.10 -3.25 2.44 -10.86 -0.03 -3.28 16 3 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 4 C 0.13 3.37 5.70 86.22 0.49 3.86 16 5 N -0.60 -15.47 2.98 -823.25 -2.45 -17.92 16 6 C 0.56 15.98 7.28 86.76 0.63 16.61 16 7 O -0.58 -20.45 16.36 -3.91 -0.06 -20.51 16 8 C -0.14 -3.36 5.08 -20.10 -0.10 -3.46 16 9 C -0.07 -1.59 9.53 22.27 0.21 -1.38 16 10 C -0.10 -2.31 9.95 22.30 0.22 -2.08 16 11 C 0.12 2.65 6.61 40.35 0.27 2.91 16 12 N -0.51 -10.45 10.33 -188.45 -1.95 -12.39 16 13 C 0.14 1.74 11.15 85.06 0.95 2.69 16 14 C -0.17 -1.53 10.03 22.14 0.22 -1.31 16 15 C -0.05 -0.55 9.89 22.54 0.22 -0.33 16 16 C -0.13 -2.27 5.74 -21.28 -0.12 -2.39 16 17 C -0.04 -0.76 7.13 22.82 0.16 -0.60 16 18 C 0.11 2.40 4.92 86.37 0.43 2.83 16 19 C -0.14 -4.54 5.66 30.67 0.17 -4.37 16 20 C 0.18 6.48 2.20 45.02 0.10 6.58 16 21 H 0.05 1.92 8.08 -2.38 -0.02 1.90 16 22 N -0.73 -34.96 4.41 -322.80 -1.42 -36.39 16 23 C -0.23 -11.88 9.93 84.04 0.83 -11.05 16 24 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 25 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 26 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 27 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 28 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 29 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 30 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 31 H 0.04 1.54 7.36 -2.38 -0.02 1.52 16 32 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 2.41 6.99 -2.39 -0.02 2.39 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 37 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.19 1.07 8.06 -2.91 -0.02 1.04 16 39 H 0.18 0.25 8.06 -2.91 -0.02 0.22 16 40 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.16 2.11 6.72 -2.91 -0.02 2.09 16 42 H 0.10 1.72 8.13 -2.38 -0.02 1.70 16 43 H 0.10 1.99 4.83 -2.38 -0.01 1.98 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 46 H 0.37 19.67 7.50 -92.70 -0.70 18.97 16 47 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -73.45 380.67 2.50 -70.96 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.29 Total: 30.06 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.78 Total: -2.16 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -5.54 Total: -125.36 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.06 Total: -20.51 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.45 2.50 -70.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036160349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.798 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds