Wall clock time and date at job start Tue Mar 31 2020 22:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.49356 * 2 1 4 4 C 1.53621 * 109.43180 * 120.21943 * 2 1 3 5 5 N 1.46928 * 108.54431 * 174.72431 * 4 2 1 6 6 C 1.34782 * 120.62767 * 126.36805 * 5 4 2 7 7 O 1.21562 * 120.00252 * 3.50003 * 6 5 4 8 8 C 1.47767 * 119.99552 * 183.49665 * 6 5 4 9 9 C 1.40638 * 119.80100 * 128.75913 * 8 6 5 10 10 C 1.35703 * 120.91784 * 179.70093 * 9 8 6 11 11 C 1.40753 * 120.11720 * 0.27585 * 10 9 8 12 12 N 1.33644 * 120.83893 * 180.02562 * 11 10 9 13 13 C 1.31122 * 121.39329 * 180.02562 * 12 11 10 14 14 C 1.39314 * 121.77374 * 359.96508 * 13 12 11 15 15 C 1.36574 * 119.90062 * 0.02562 * 14 13 12 16 16 C 1.40887 * 118.15947 * 0.02562 * 15 14 13 17 17 C 1.38548 * 119.81047 * 309.00046 * 8 6 5 18 18 C 1.46922 * 118.73892 * 306.09800 * 5 4 2 19 19 C 1.53191 * 108.77693 * 53.85829 * 18 5 4 20 20 C 1.53034 * 109.49756 * 239.93195 * 2 1 3 21 21 H 1.08997 * 109.46199 * 58.66440 * 20 2 1 22 22 N 1.46501 * 109.46311 * 298.69996 * 20 2 1 23 23 C 1.36933 * 119.99901 * 154.92649 * 22 20 2 24 24 H 1.07998 * 120.00327 * 0.02562 * 23 22 20 25 25 C 1.38820 * 119.99866 * 180.02562 * 23 22 20 26 26 N 1.31617 * 119.99790 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99788 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47028 * 90.00425 * 27 25 23 29 29 H 1.48501 * 109.46837 * 210.00034 * 27 25 23 30 30 H 1.48494 * 109.47633 * 329.99997 * 27 25 23 31 31 H 1.08999 * 109.46824 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46980 * 300.06425 * 1 2 3 33 33 H 1.08996 * 109.47264 * 60.06657 * 1 2 3 34 34 H 1.08996 * 109.74275 * 54.98833 * 4 2 1 35 35 H 1.09001 * 109.66801 * 294.41604 * 4 2 1 36 36 H 1.07997 * 119.53834 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.93529 * 180.30011 * 10 9 8 38 38 H 1.08001 * 119.11208 * 179.97438 * 13 12 11 39 39 H 1.07998 * 120.05016 * 180.02562 * 14 13 12 40 40 H 1.08004 * 120.92154 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.29972 * 0.03623 * 17 8 6 42 42 H 1.09004 * 109.58685 * 173.64588 * 18 5 4 43 43 H 1.09001 * 109.58328 * 294.06790 * 18 5 4 44 44 H 1.08992 * 109.49944 * 65.31551 * 19 18 5 45 45 H 1.09001 * 109.49940 * 185.41951 * 19 18 5 46 46 H 0.96997 * 119.99780 * 334.94361 * 22 20 2 47 47 H 0.96995 * 120.00022 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7292 1.2518 5 7 3.5047 -0.8294 1.1694 6 6 4.2811 -0.3868 2.1783 7 8 3.7709 0.0422 3.1948 8 6 5.7527 -0.4233 2.0486 9 6 6.5064 0.7347 2.3115 10 6 7.8592 0.7250 2.2053 11 6 8.5292 -0.4520 1.8221 12 7 9.8610 -0.4778 1.7135 13 6 10.4962 -1.5681 1.3570 14 6 9.8192 -2.7524 1.0745 15 6 8.4572 -2.7964 1.1658 16 6 7.7781 -1.6227 1.5481 17 6 6.3814 -1.5964 1.6641 18 6 4.1053 -1.4266 -0.0311 19 6 3.5709 -0.6946 -1.2661 20 6 2.0408 -0.7228 -1.2485 21 1 1.6582 -0.2240 -2.1389 22 7 1.5785 -2.1128 -1.2312 23 6 1.4469 -2.8052 -2.4053 24 1 1.6843 -2.3267 -3.3439 25 6 1.0082 -4.1221 -2.3890 26 7 0.7184 -4.7051 -1.2451 27 14 0.8295 -5.0668 -3.9906 28 1 2.1066 -5.7570 -4.3034 29 1 -0.2556 -6.0715 -3.8541 30 1 0.4952 -4.1232 -5.0873 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8905 34 1 1.6085 -1.7285 1.2982 35 1 1.7631 -0.1667 2.1432 36 1 6.0018 1.6429 2.6061 37 1 8.4227 1.6221 2.4156 38 1 11.5733 -1.5474 1.2805 39 1 10.3705 -3.6343 0.7836 40 1 7.9157 -3.7059 0.9509 41 1 5.8008 -2.4836 1.4582 42 1 5.1897 -1.3245 0.0135 43 1 3.8376 -2.4817 -0.0872 44 1 3.9159 0.3392 -1.2540 45 1 3.9334 -1.1892 -2.1673 46 1 1.3653 -2.5426 -0.3882 47 1 0.4115 -5.6251 -1.2338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036160351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:29 Heat of formation + Delta-G solvation = 36.774705 kcal Electronic energy + Delta-G solvation = -29533.987043 eV Core-core repulsion = 25681.813942 eV Total energy + Delta-G solvation = -3852.173101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.17155 -40.00932 -37.92268 -36.76781 -34.41689 -33.72304 -32.87367 -31.45456 -30.87150 -30.33546 -29.21664 -26.47882 -25.50832 -24.43938 -23.77639 -23.48769 -22.39126 -21.65771 -20.41585 -18.62001 -18.21092 -17.44554 -17.30123 -17.03486 -16.29372 -15.62889 -15.18323 -14.74064 -14.64712 -14.46790 -14.44482 -14.14527 -14.01511 -13.83813 -13.35695 -13.33177 -13.30639 -12.84192 -12.56476 -12.40988 -12.19340 -12.00690 -11.65189 -11.51840 -11.34818 -11.22249 -10.95058 -10.83545 -10.81296 -10.53462 -10.47337 -10.22847 -9.89043 -9.83045 -9.67401 -9.58993 -9.01036 -8.97897 -8.44392 -8.28023 -7.02403 -5.83687 -3.12152 0.06012 0.50607 1.71646 2.39332 2.92610 3.22961 3.37618 3.44212 3.45296 3.86923 4.02772 4.32750 4.43369 4.48365 4.53304 4.64946 4.85455 4.85932 5.03449 5.14986 5.22154 5.27774 5.32636 5.49537 5.51614 5.54854 5.65275 5.67033 5.72533 5.77961 5.80096 5.88342 6.00584 6.02346 6.04266 6.13087 6.19575 6.25654 6.28582 6.36626 6.46407 6.52471 6.59740 6.64643 6.72072 6.88674 6.95940 7.60552 7.64353 7.64561 8.25569 8.34828 9.46598 10.02969 10.38253 11.38658 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011650 B = 0.003433 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.911020 B = 8153.726056 C = 9876.563726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.555 3.445 7 O -0.544 6.544 8 C -0.112 4.112 9 C -0.058 4.058 10 C -0.098 4.098 11 C 0.138 3.862 12 N -0.479 5.479 13 C 0.136 3.864 14 C -0.181 4.181 15 C -0.046 4.046 16 C -0.108 4.108 17 C -0.058 4.058 18 C 0.103 3.897 19 C -0.149 4.149 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.719 5.719 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.159 0.841 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.074 0.926 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.362 7.531 5.125 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.322 5.322 6 C 0.342 3.658 7 O -0.423 6.423 8 C -0.115 4.115 9 C -0.078 4.078 10 C -0.117 4.117 11 C 0.017 3.983 12 N -0.187 5.187 13 C -0.037 4.037 14 C -0.201 4.201 15 C -0.072 4.072 16 C -0.110 4.110 17 C -0.077 4.077 18 C -0.019 4.019 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.208 1.208 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.176 0.824 39 H 0.157 0.843 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.406 8.516 5.680 18.497 hybrid contribution -0.537 -1.697 -0.989 2.036 sum 14.868 6.819 4.691 17.017 Atomic orbital electron populations 1.21668 0.94152 1.03225 1.00484 1.21784 0.96551 0.98820 0.95643 0.91554 1.21794 0.78026 1.01766 0.98707 1.48084 1.07223 1.59014 1.17895 1.18259 0.86175 0.77959 0.83372 1.90770 1.74829 1.47750 1.28931 1.19956 0.93825 0.95101 1.02625 1.20793 0.93291 0.97542 0.96193 1.20658 0.93611 0.97113 1.00324 1.18967 0.89369 0.93083 0.96927 1.68056 1.08456 1.28793 1.13358 1.23009 1.00593 0.87924 0.92142 1.21895 0.95200 1.00113 1.02902 1.21609 0.94737 0.97251 0.93625 1.18756 0.94265 0.95020 1.02959 1.21563 0.92912 0.98045 0.95171 1.22047 0.97158 0.98926 0.83731 1.22524 1.00454 0.98700 0.97382 1.20219 0.90744 0.87369 0.94871 0.93084 1.42477 1.78997 1.07706 1.06928 1.19220 1.37225 0.93885 0.86572 0.91262 1.24695 1.02230 0.97183 0.96581 1.69643 1.51672 1.13066 1.23668 0.86246 0.77281 0.79839 0.83135 1.21844 1.21872 1.20840 0.91010 0.93720 0.92776 0.90378 0.89651 0.84559 0.84204 0.82356 0.84314 0.83901 0.84026 0.90536 0.89498 0.93266 0.90736 0.78108 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.05 37.16 0.34 -1.82 16 2 C -0.11 -1.72 2.69 -90.28 -0.24 -1.97 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.97 5.43 -3.49 -0.02 1.95 16 5 N -0.59 -9.41 2.97 -173.65 -0.52 -9.92 16 6 C 0.55 8.97 7.21 -12.36 -0.09 8.88 16 7 O -0.54 -10.32 16.47 5.31 0.09 -10.23 16 8 C -0.11 -1.53 5.00 -104.98 -0.53 -2.06 16 9 C -0.06 -0.70 9.62 -39.58 -0.38 -1.08 16 10 C -0.10 -1.13 9.95 -39.54 -0.39 -1.52 16 11 C 0.14 1.70 6.61 -84.78 -0.56 1.14 16 12 N -0.48 -5.62 10.33 -10.92 -0.11 -5.73 16 13 C 0.14 1.20 11.15 -17.45 -0.19 1.01 16 14 C -0.18 -1.45 10.03 -39.78 -0.40 -1.85 16 15 C -0.05 -0.44 9.89 -39.18 -0.39 -0.83 16 16 C -0.11 -1.27 5.74 -106.82 -0.61 -1.88 16 17 C -0.06 -0.71 7.10 -38.74 -0.28 -0.99 16 18 C 0.10 1.60 5.10 -3.71 -0.02 1.58 16 19 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 20 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -16.02 3.64 -53.38 -0.19 -16.22 16 23 C -0.24 -6.05 9.93 -15.06 -0.15 -6.20 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.45 13.06 55.49 0.72 -25.72 16 27 Si 0.90 21.35 29.55 -169.99 -5.02 16.32 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 31 H 0.07 1.31 7.54 -51.93 -0.39 0.91 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.42 6.63 -51.93 -0.34 1.08 16 35 H 0.09 1.41 7.02 -51.93 -0.36 1.05 16 36 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 41 H 0.14 1.66 7.07 -52.49 -0.37 1.28 16 42 H 0.08 1.04 4.57 -51.93 -0.24 0.80 16 43 H 0.09 1.55 7.74 -51.93 -0.40 1.14 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.38 9.18 5.92 -40.82 -0.24 8.93 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -30.87 377.35 -10.23 -41.10 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.55 Total: 10.25 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -4.33 Total: -5.53 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.10 Total: -57.59 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.87 -10.23 -41.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036160351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.872 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds