Wall clock time and date at job start Tue Mar 31 2020 22:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.49356 * 2 1 4 4 C 1.53621 * 109.43180 * 120.21943 * 2 1 3 5 5 N 1.46928 * 108.54431 * 174.72431 * 4 2 1 6 6 C 1.34782 * 120.62767 * 126.36805 * 5 4 2 7 7 O 1.21562 * 120.00252 * 3.50003 * 6 5 4 8 8 C 1.47767 * 119.99552 * 183.49665 * 6 5 4 9 9 C 1.40638 * 119.80100 * 128.75913 * 8 6 5 10 10 C 1.35703 * 120.91784 * 179.70093 * 9 8 6 11 11 C 1.40753 * 120.11720 * 0.27585 * 10 9 8 12 12 N 1.33644 * 120.83893 * 180.02562 * 11 10 9 13 13 C 1.31122 * 121.39329 * 180.02562 * 12 11 10 14 14 C 1.39314 * 121.77374 * 359.96508 * 13 12 11 15 15 C 1.36574 * 119.90062 * 0.02562 * 14 13 12 16 16 C 1.40887 * 118.15947 * 0.02562 * 15 14 13 17 17 C 1.38548 * 119.81047 * 309.00046 * 8 6 5 18 18 C 1.46922 * 118.73892 * 306.09800 * 5 4 2 19 19 C 1.53191 * 108.77693 * 53.85829 * 18 5 4 20 20 C 1.53034 * 109.49756 * 239.93195 * 2 1 3 21 21 H 1.08997 * 109.46199 * 58.66440 * 20 2 1 22 22 N 1.46501 * 109.46311 * 298.69996 * 20 2 1 23 23 C 1.36933 * 119.99901 * 154.92649 * 22 20 2 24 24 H 1.07998 * 120.00327 * 0.02562 * 23 22 20 25 25 C 1.38820 * 119.99866 * 180.02562 * 23 22 20 26 26 N 1.31617 * 119.99790 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99788 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47028 * 90.00425 * 27 25 23 29 29 H 1.48501 * 109.46837 * 210.00034 * 27 25 23 30 30 H 1.48494 * 109.47633 * 329.99997 * 27 25 23 31 31 H 1.08999 * 109.46824 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46980 * 300.06425 * 1 2 3 33 33 H 1.08996 * 109.47264 * 60.06657 * 1 2 3 34 34 H 1.08996 * 109.74275 * 54.98833 * 4 2 1 35 35 H 1.09001 * 109.66801 * 294.41604 * 4 2 1 36 36 H 1.07997 * 119.53834 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.93529 * 180.30011 * 10 9 8 38 38 H 1.08001 * 119.11208 * 179.97438 * 13 12 11 39 39 H 1.07998 * 120.05016 * 180.02562 * 14 13 12 40 40 H 1.08004 * 120.92154 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.29972 * 0.03623 * 17 8 6 42 42 H 1.09004 * 109.58685 * 173.64588 * 18 5 4 43 43 H 1.09001 * 109.58328 * 294.06790 * 18 5 4 44 44 H 1.08992 * 109.49944 * 65.31551 * 19 18 5 45 45 H 1.09001 * 109.49940 * 185.41951 * 19 18 5 46 46 H 0.96997 * 119.99780 * 334.94361 * 22 20 2 47 47 H 0.96995 * 120.00022 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7292 1.2518 5 7 3.5047 -0.8294 1.1694 6 6 4.2811 -0.3868 2.1783 7 8 3.7709 0.0422 3.1948 8 6 5.7527 -0.4233 2.0486 9 6 6.5064 0.7347 2.3115 10 6 7.8592 0.7250 2.2053 11 6 8.5292 -0.4520 1.8221 12 7 9.8610 -0.4778 1.7135 13 6 10.4962 -1.5681 1.3570 14 6 9.8192 -2.7524 1.0745 15 6 8.4572 -2.7964 1.1658 16 6 7.7781 -1.6227 1.5481 17 6 6.3814 -1.5964 1.6641 18 6 4.1053 -1.4266 -0.0311 19 6 3.5709 -0.6946 -1.2661 20 6 2.0408 -0.7228 -1.2485 21 1 1.6582 -0.2240 -2.1389 22 7 1.5785 -2.1128 -1.2312 23 6 1.4469 -2.8052 -2.4053 24 1 1.6843 -2.3267 -3.3439 25 6 1.0082 -4.1221 -2.3890 26 7 0.7184 -4.7051 -1.2451 27 14 0.8295 -5.0668 -3.9906 28 1 2.1066 -5.7570 -4.3034 29 1 -0.2556 -6.0715 -3.8541 30 1 0.4952 -4.1232 -5.0873 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8905 34 1 1.6085 -1.7285 1.2982 35 1 1.7631 -0.1667 2.1432 36 1 6.0018 1.6429 2.6061 37 1 8.4227 1.6221 2.4156 38 1 11.5733 -1.5474 1.2805 39 1 10.3705 -3.6343 0.7836 40 1 7.9157 -3.7059 0.9509 41 1 5.8008 -2.4836 1.4582 42 1 5.1897 -1.3245 0.0135 43 1 3.8376 -2.4817 -0.0872 44 1 3.9159 0.3392 -1.2540 45 1 3.9334 -1.1892 -2.1673 46 1 1.3653 -2.5426 -0.3882 47 1 0.4115 -5.6251 -1.2338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036160351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:28 Heat of formation + Delta-G solvation = 19.772067 kcal Electronic energy + Delta-G solvation = -29534.724333 eV Core-core repulsion = 25681.813942 eV Total energy + Delta-G solvation = -3852.910390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.11237 -41.16863 -39.25713 -37.75129 -35.93245 -34.71323 -34.31109 -33.01102 -31.74761 -31.22053 -30.92406 -27.73229 -26.86346 -25.62827 -25.12567 -24.62860 -23.34445 -22.95377 -21.56877 -19.94595 -19.26795 -19.18634 -18.43410 -17.92082 -17.43362 -16.72976 -16.58047 -16.17779 -15.91163 -15.66518 -15.49476 -15.34105 -15.17295 -15.03339 -14.84812 -14.35626 -14.25530 -14.11858 -14.00949 -13.60003 -13.24338 -13.14999 -12.98405 -12.85344 -12.72609 -12.56715 -12.48058 -12.40125 -12.10491 -11.99016 -11.92727 -11.59140 -11.55984 -11.18931 -11.05558 -10.82804 -10.51012 -9.86832 -9.66033 -9.30937 -8.91425 -7.87715 -5.13883 -0.77965 -0.31858 0.87560 1.37417 1.50133 1.51509 1.58735 1.79811 2.06942 2.60606 3.04063 3.22137 3.36656 3.46239 3.52287 3.73904 3.81741 3.87255 3.93606 3.99083 4.02506 4.07268 4.08843 4.29713 4.32221 4.37388 4.49247 4.51542 4.61141 4.69540 4.72394 4.82400 4.85708 4.91625 4.94899 5.01056 5.03558 5.13343 5.16527 5.22389 5.25197 5.28110 5.29271 5.46661 5.47987 5.59333 5.62511 5.75258 6.32229 6.34023 6.88387 6.97300 7.41914 8.17365 8.41645 9.35386 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011650 B = 0.003433 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.911020 B = 8153.726056 C = 9876.563726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.123 3.877 5 N -0.591 5.591 6 C 0.557 3.443 7 O -0.577 6.577 8 C -0.131 4.131 9 C -0.064 4.064 10 C -0.096 4.096 11 C 0.121 3.879 12 N -0.505 5.505 13 C 0.139 3.861 14 C -0.169 4.169 15 C -0.058 4.058 16 C -0.122 4.122 17 C -0.055 4.055 18 C 0.114 3.886 19 C -0.142 4.142 20 C 0.173 3.827 21 H 0.048 0.952 22 N -0.724 5.724 23 C -0.227 4.227 24 H 0.074 0.926 25 C -0.070 4.070 26 N -0.967 5.967 27 Si 0.962 3.038 28 H -0.289 1.289 29 H -0.303 1.303 30 H -0.273 1.273 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.194 0.806 39 H 0.175 0.825 40 H 0.160 0.840 41 H 0.143 0.857 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.914 8.168 4.201 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 H 0.105 0.895 4 C 0.001 3.999 5 N -0.321 5.321 6 C 0.347 3.653 7 O -0.458 6.458 8 C -0.134 4.134 9 C -0.085 4.085 10 C -0.115 4.115 11 C 0.000 4.000 12 N -0.214 5.214 13 C -0.033 4.033 14 C -0.189 4.189 15 C -0.084 4.084 16 C -0.124 4.124 17 C -0.074 4.074 18 C -0.008 4.008 19 C -0.183 4.183 20 C 0.065 3.935 21 H 0.066 0.934 22 N -0.365 5.365 23 C -0.359 4.359 24 H 0.092 0.908 25 C -0.262 4.262 26 N -0.619 5.619 27 Si 0.792 3.208 28 H -0.217 1.217 29 H -0.230 1.230 30 H -0.198 1.198 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.160 0.840 37 H 0.174 0.826 38 H 0.211 0.789 39 H 0.193 0.807 40 H 0.178 0.822 41 H 0.160 0.840 42 H 0.117 0.883 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.208 0.792 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.982 9.196 4.725 20.743 hybrid contribution -1.164 -1.883 -0.694 2.320 sum 16.818 7.313 4.031 18.777 Atomic orbital electron populations 1.21601 0.93904 1.01584 1.01846 1.21710 0.96694 0.99285 0.94086 0.89540 1.21662 0.78635 1.00540 0.99084 1.48093 1.06930 1.58947 1.18095 1.18631 0.87233 0.76895 0.82559 1.90741 1.75729 1.49262 1.30035 1.19804 0.92142 0.96405 1.05015 1.20831 0.93600 0.97338 0.96695 1.20834 0.93330 0.97684 0.99604 1.19202 0.90057 0.93456 0.97237 1.68110 1.08079 1.30339 1.14831 1.23721 1.02286 0.87392 0.89919 1.22314 0.94682 1.01022 1.00852 1.21920 0.95727 0.97110 0.93596 1.18907 0.93897 0.96000 1.03588 1.21585 0.93505 0.97543 0.94804 1.21927 0.98380 0.97200 0.83323 1.22407 0.98566 1.00068 0.97272 1.20423 0.92056 0.85274 0.95794 0.93394 1.42576 1.79094 1.09204 1.05627 1.19555 1.34806 0.93879 0.87659 0.90772 1.25346 1.03514 0.98377 0.98990 1.69794 1.53791 1.12860 1.25433 0.85309 0.76657 0.78444 0.80354 1.21686 1.23031 1.19824 0.94058 0.91628 0.92148 0.92681 0.89610 0.83964 0.82647 0.78912 0.80740 0.82243 0.83971 0.88333 0.92130 0.90975 0.91392 0.79242 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.05 71.98 0.65 -3.42 16 2 C -0.10 -3.06 2.69 -10.57 -0.03 -3.09 16 3 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.12 4.13 5.43 86.51 0.47 4.60 16 5 N -0.59 -18.85 2.97 -821.56 -2.44 -21.28 16 6 C 0.56 18.11 7.21 86.76 0.63 18.74 16 7 O -0.58 -22.19 16.47 -3.91 -0.06 -22.25 16 8 C -0.13 -3.54 5.00 -20.10 -0.10 -3.64 16 9 C -0.06 -1.53 9.62 22.27 0.21 -1.32 16 10 C -0.10 -2.11 9.95 22.30 0.22 -1.88 16 11 C 0.12 2.82 6.61 40.35 0.27 3.09 16 12 N -0.50 -10.74 10.33 -188.45 -1.95 -12.69 16 13 C 0.14 1.99 11.15 85.06 0.95 2.94 16 14 C -0.17 -2.09 10.03 22.14 0.22 -1.87 16 15 C -0.06 -0.96 9.89 22.53 0.22 -0.74 16 16 C -0.12 -2.70 5.74 -21.29 -0.12 -2.83 16 17 C -0.05 -1.33 7.10 22.82 0.16 -1.17 16 18 C 0.11 3.48 5.10 86.36 0.44 3.92 16 19 C -0.14 -4.44 5.78 30.67 0.18 -4.26 16 20 C 0.17 6.18 2.53 45.02 0.11 6.29 16 21 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 22 N -0.72 -32.72 3.64 -322.81 -1.17 -33.89 16 23 C -0.23 -11.58 9.93 84.04 0.83 -10.74 16 24 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 25 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 26 N -0.97 -56.38 13.06 21.65 0.28 -56.09 16 27 Si 0.96 44.26 29.55 68.60 2.03 46.29 16 28 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 29 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 30 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 31 H 0.04 1.53 7.54 -2.39 -0.02 1.51 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 2.11 6.63 -2.39 -0.02 2.09 16 35 H 0.09 2.88 7.02 -2.39 -0.02 2.86 16 36 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 40 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.14 3.31 7.07 -2.91 -0.02 3.29 16 42 H 0.10 2.60 4.57 -2.39 -0.01 2.59 16 43 H 0.06 2.20 7.74 -2.39 -0.02 2.18 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.37 18.50 5.92 -92.71 -0.55 17.95 16 47 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -67.64 377.35 2.92 -64.72 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.44 Total: 33.88 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 5.79 Total: 1.32 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -5.28 Total: -123.96 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.06 Total: -22.25 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -67.64 2.92 -64.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036160351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.493 kcal (2) G-P(sol) polarization free energy of solvation -67.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds