Wall clock time and date at job start Tue Mar 31 2020 22:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.49980 * 2 1 4 4 C 1.53190 * 109.49812 * 239.93235 * 2 1 3 5 5 N 1.46923 * 108.77521 * 185.41355 * 4 2 1 6 6 C 1.34784 * 120.63235 * 233.58497 * 5 4 2 7 7 O 1.21538 * 119.99728 * 5.08306 * 6 5 4 8 8 C 1.47944 * 119.99883 * 185.08174 * 6 5 4 9 9 N 1.32197 * 120.15802 * 75.69438 * 8 6 5 10 10 C 1.32034 * 122.68057 * 179.97438 * 9 8 6 11 11 C 1.36683 * 122.02979 * 0.02562 * 10 9 8 12 12 C 1.40529 * 118.84549 * 359.97438 * 11 10 9 13 13 C 1.40326 * 122.21817 * 179.97438 * 12 11 10 14 14 C 1.36202 * 119.45535 * 180.02562 * 13 12 11 15 15 C 1.39387 * 120.99845 * 359.97438 * 14 13 12 16 16 C 1.36258 * 121.08491 * 0.27334 * 15 14 13 17 17 C 1.40094 * 119.53195 * 359.50043 * 16 15 14 18 18 C 1.46926 * 118.74163 * 53.86220 * 5 4 2 19 19 C 1.53628 * 108.54305 * 306.09455 * 18 5 4 20 20 C 1.53040 * 109.24168 * 54.84876 * 19 18 5 21 21 H 1.09004 * 109.44560 * 58.52710 * 20 19 18 22 22 N 1.46503 * 109.46307 * 178.49230 * 20 19 18 23 23 C 1.36940 * 120.00053 * 275.07509 * 22 20 19 24 24 H 1.08007 * 119.99715 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00123 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00023 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00160 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47398 * 89.99545 * 27 25 23 29 29 H 1.48498 * 109.47001 * 209.99740 * 27 25 23 30 30 H 1.48500 * 109.47005 * 329.99903 * 27 25 23 31 31 H 1.08996 * 109.47682 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47459 * 300.07031 * 1 2 3 33 33 H 1.09006 * 109.47017 * 60.06212 * 1 2 3 34 34 H 1.08997 * 109.58331 * 65.62782 * 4 2 1 35 35 H 1.08997 * 109.70473 * 305.26921 * 4 2 1 36 36 H 1.08002 * 118.98009 * 179.97438 * 10 9 8 37 37 H 1.07998 * 120.57652 * 179.97438 * 11 10 9 38 38 H 1.07998 * 120.27246 * 0.02562 * 13 12 11 39 39 H 1.08000 * 119.50299 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.45690 * 179.97438 * 15 14 13 41 41 H 1.07994 * 120.23135 * 179.72509 * 16 15 14 42 42 H 1.09005 * 109.58778 * 65.92493 * 18 5 4 43 43 H 1.09002 * 109.59317 * 186.35250 * 18 5 4 44 44 H 1.09000 * 109.63195 * 294.86439 * 19 18 5 45 45 H 1.08999 * 109.46219 * 174.73465 * 19 18 5 46 46 H 0.96991 * 119.99913 * 95.06919 * 22 20 19 47 47 H 0.97001 * 120.00520 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0412 -0.7235 -1.2497 5 7 3.5045 -0.8288 -1.1697 6 6 4.2811 -0.3859 -2.1784 7 8 3.7793 0.1894 -3.1241 8 6 5.7443 -0.5999 -2.1342 9 7 6.2486 -1.7953 -2.3878 10 6 7.5455 -2.0419 -2.3628 11 6 8.4624 -1.0714 -2.0705 12 6 8.0078 0.2281 -1.7888 13 6 8.8865 1.2776 -1.4795 14 6 8.3843 2.5157 -1.2151 15 6 7.0116 2.7556 -1.2477 16 6 6.1299 1.7586 -1.5394 17 6 6.6099 0.4730 -1.8216 18 6 4.1050 -1.4318 0.0280 19 6 3.5708 -0.6954 1.2659 20 6 2.0408 -0.7233 1.2482 21 1 1.6969 -1.7576 1.2347 22 7 1.5264 -0.0535 2.4453 23 6 1.3963 -0.7501 3.6171 24 1 1.6725 -1.7934 3.6586 25 6 0.9095 -0.1153 4.7515 26 7 0.5733 1.1562 4.7010 27 14 0.7327 -1.0653 6.3501 28 1 1.9904 -0.9569 7.1321 29 1 -0.3912 -0.5008 7.1397 30 1 0.4583 -2.4934 6.0495 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5150 0.8894 33 1 -0.3633 0.5129 -0.8906 34 1 1.7637 -0.1574 -2.1388 35 1 1.6054 -1.7212 -1.3009 36 1 7.8923 -3.0416 -2.5793 37 1 9.5180 -1.2993 -2.0562 38 1 9.9522 1.1049 -1.4514 39 1 9.0599 3.3239 -0.9766 40 1 6.6405 3.7470 -1.0335 41 1 5.0689 1.9588 -1.5565 42 1 3.8338 -2.4862 0.0814 43 1 5.1896 -1.3332 -0.0178 44 1 3.9159 0.3385 1.2542 45 1 3.9333 -1.1898 2.1672 46 1 1.2781 0.8833 2.4079 47 1 0.2335 1.6000 5.4938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036163376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:57 Heat of formation + Delta-G solvation = 32.761726 kcal Electronic energy + Delta-G solvation = -29578.731183 eV Core-core repulsion = 25726.384066 eV Total energy + Delta-G solvation = -3852.347116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.38545 -39.76305 -37.75608 -37.48222 -34.65025 -33.43352 -32.68147 -31.54009 -31.45100 -30.03914 -29.30132 -26.81557 -25.40436 -24.48859 -23.83812 -23.17954 -22.44507 -21.67425 -20.19853 -19.34463 -18.10449 -17.78903 -17.21050 -17.05557 -16.44121 -15.91082 -15.23727 -14.97939 -14.74156 -14.44176 -14.38139 -14.07292 -13.99390 -13.76504 -13.65501 -13.33265 -13.16176 -12.88348 -12.47875 -12.45018 -12.22533 -12.12155 -11.75666 -11.60544 -11.47175 -11.20341 -10.95430 -10.82071 -10.66552 -10.49469 -10.42515 -10.23005 -10.20653 -9.76444 -9.64281 -9.62545 -9.38971 -8.92481 -8.54332 -8.33783 -6.98324 -5.79242 -3.07894 -0.04718 0.62181 1.55870 2.39812 2.73361 2.91101 3.41160 3.46912 3.48257 3.74163 4.01862 4.24371 4.41603 4.50516 4.56195 4.60976 4.83398 4.87165 5.01536 5.05751 5.10221 5.23214 5.25953 5.35514 5.43035 5.47650 5.51505 5.61889 5.66517 5.69456 5.76930 5.77636 5.93938 6.06386 6.08970 6.13539 6.16256 6.25831 6.29427 6.35537 6.41986 6.49637 6.53208 6.60101 6.79227 6.90277 7.03112 7.36505 7.59002 7.67420 8.02836 8.38993 9.50614 10.07675 10.42778 11.43227 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.003154 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.645414 B = 8875.000853 C = 9517.070319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.119 3.881 5 N -0.589 5.589 6 C 0.578 3.422 7 O -0.531 6.531 8 C 0.149 3.851 9 N -0.459 5.459 10 C 0.079 3.921 11 C -0.144 4.144 12 C -0.024 4.024 13 C -0.115 4.115 14 C -0.093 4.093 15 C -0.113 4.113 16 C -0.080 4.080 17 C -0.083 4.083 18 C 0.113 3.887 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.160 0.840 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.200 -1.425 -14.426 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.089 0.911 4 C -0.003 4.003 5 N -0.320 5.320 6 C 0.363 3.637 7 O -0.407 6.407 8 C -0.005 4.005 9 N -0.169 5.169 10 C -0.066 4.066 11 C -0.164 4.164 12 C -0.029 4.029 13 C -0.133 4.133 14 C -0.112 4.112 15 C -0.131 4.131 16 C -0.100 4.100 17 C -0.085 4.085 18 C -0.011 4.011 19 C -0.192 4.192 20 C 0.073 3.927 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.177 0.823 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.403 -2.022 -14.981 21.582 hybrid contribution 0.652 0.427 1.270 1.490 sum 16.055 -1.595 -13.711 21.173 Atomic orbital electron populations 1.21657 0.93923 1.01867 1.01908 1.21747 0.96718 1.00034 0.94458 0.91146 1.21818 0.77525 1.01295 0.99644 1.48071 1.07277 1.58786 1.17874 1.17773 0.84656 0.78595 0.82705 1.90805 1.73775 1.42128 1.34033 1.21305 0.94257 0.89269 0.95641 1.67374 1.16135 1.21204 1.12184 1.22225 0.87464 0.99921 0.97029 1.22078 1.01452 0.92599 1.00272 1.18127 0.92219 0.94607 0.97962 1.20964 0.99356 0.92367 1.00570 1.21054 0.95557 0.97179 0.97383 1.21017 0.93157 0.99768 0.99151 1.21058 1.00787 0.91428 0.96729 1.18669 0.93114 0.94881 1.01864 1.21933 0.97184 0.97586 0.84369 1.22781 1.00445 1.00309 0.95634 1.20198 0.90199 0.95813 0.86449 0.93271 1.42397 1.76436 1.11433 1.05728 1.19221 1.35906 0.94122 0.87701 0.91232 1.24714 1.02036 0.96008 0.98003 1.69655 1.50033 1.09487 1.28853 0.86233 0.77259 0.78947 0.84009 1.21809 1.21824 1.20773 0.92973 0.90686 0.93745 0.89085 0.91020 0.82265 0.84004 0.84825 0.85235 0.85067 0.84866 0.90965 0.91276 0.92174 0.90495 0.78203 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.02 37.15 0.34 -1.83 16 2 C -0.11 -1.78 2.46 -90.50 -0.22 -2.00 16 3 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 4 C 0.12 1.75 5.72 -3.71 -0.02 1.73 16 5 N -0.59 -8.89 2.97 -173.58 -0.51 -9.41 16 6 C 0.58 9.31 6.07 -12.28 -0.07 9.24 16 7 O -0.53 -9.83 16.51 5.33 0.09 -9.74 16 8 C 0.15 2.17 4.54 -82.55 -0.38 1.79 16 9 N -0.46 -6.27 10.20 -9.81 -0.10 -6.37 16 10 C 0.08 0.81 11.06 -18.03 -0.20 0.61 16 11 C -0.14 -1.31 9.88 -39.28 -0.39 -1.70 16 12 C -0.02 -0.26 5.75 -106.83 -0.61 -0.88 16 13 C -0.11 -0.99 9.82 -39.53 -0.39 -1.38 16 14 C -0.09 -0.79 9.95 -39.89 -0.40 -1.18 16 15 C -0.11 -1.14 9.95 -39.87 -0.40 -1.53 16 16 C -0.08 -1.01 9.42 -39.60 -0.37 -1.38 16 17 C -0.08 -1.10 5.76 -106.59 -0.61 -1.71 16 18 C 0.11 1.63 6.35 -3.48 -0.02 1.61 16 19 C -0.15 -2.56 5.67 -26.38 -0.15 -2.71 16 20 C 0.18 3.44 2.19 -67.89 -0.15 3.29 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -17.03 4.41 -53.38 -0.24 -17.26 16 23 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 24 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 27 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.40 7.37 -51.92 -0.38 1.02 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.13 1.78 7.23 -52.49 -0.38 1.40 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.97 6.35 -51.93 -0.33 0.64 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.38 9.79 7.50 -40.82 -0.31 9.49 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -32.12 384.02 -10.37 -42.49 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.80 Total: 9.21 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -4.29 Total: -4.91 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.13 Total: -59.70 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.12 -10.37 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036163376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.248 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds