Wall clock time and date at job start Tue Mar 31 2020 22:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.49980 * 2 1 4 4 C 1.53190 * 109.49812 * 239.93235 * 2 1 3 5 5 N 1.46923 * 108.77521 * 185.41355 * 4 2 1 6 6 C 1.34784 * 120.63235 * 233.58497 * 5 4 2 7 7 O 1.21538 * 119.99728 * 5.08306 * 6 5 4 8 8 C 1.47944 * 119.99883 * 185.08174 * 6 5 4 9 9 N 1.32197 * 120.15802 * 75.69438 * 8 6 5 10 10 C 1.32034 * 122.68057 * 179.97438 * 9 8 6 11 11 C 1.36683 * 122.02979 * 0.02562 * 10 9 8 12 12 C 1.40529 * 118.84549 * 359.97438 * 11 10 9 13 13 C 1.40326 * 122.21817 * 179.97438 * 12 11 10 14 14 C 1.36202 * 119.45535 * 180.02562 * 13 12 11 15 15 C 1.39387 * 120.99845 * 359.97438 * 14 13 12 16 16 C 1.36258 * 121.08491 * 0.27334 * 15 14 13 17 17 C 1.40094 * 119.53195 * 359.50043 * 16 15 14 18 18 C 1.46926 * 118.74163 * 53.86220 * 5 4 2 19 19 C 1.53628 * 108.54305 * 306.09455 * 18 5 4 20 20 C 1.53040 * 109.24168 * 54.84876 * 19 18 5 21 21 H 1.09004 * 109.44560 * 58.52710 * 20 19 18 22 22 N 1.46503 * 109.46307 * 178.49230 * 20 19 18 23 23 C 1.36940 * 120.00053 * 275.07509 * 22 20 19 24 24 H 1.08007 * 119.99715 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00123 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00023 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00160 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47398 * 89.99545 * 27 25 23 29 29 H 1.48498 * 109.47001 * 209.99740 * 27 25 23 30 30 H 1.48500 * 109.47005 * 329.99903 * 27 25 23 31 31 H 1.08996 * 109.47682 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47459 * 300.07031 * 1 2 3 33 33 H 1.09006 * 109.47017 * 60.06212 * 1 2 3 34 34 H 1.08997 * 109.58331 * 65.62782 * 4 2 1 35 35 H 1.08997 * 109.70473 * 305.26921 * 4 2 1 36 36 H 1.08002 * 118.98009 * 179.97438 * 10 9 8 37 37 H 1.07998 * 120.57652 * 179.97438 * 11 10 9 38 38 H 1.07998 * 120.27246 * 0.02562 * 13 12 11 39 39 H 1.08000 * 119.50299 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.45690 * 179.97438 * 15 14 13 41 41 H 1.07994 * 120.23135 * 179.72509 * 16 15 14 42 42 H 1.09005 * 109.58778 * 65.92493 * 18 5 4 43 43 H 1.09002 * 109.59317 * 186.35250 * 18 5 4 44 44 H 1.09000 * 109.63195 * 294.86439 * 19 18 5 45 45 H 1.08999 * 109.46219 * 174.73465 * 19 18 5 46 46 H 0.96991 * 119.99913 * 95.06919 * 22 20 19 47 47 H 0.97001 * 120.00520 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0412 -0.7235 -1.2497 5 7 3.5045 -0.8288 -1.1697 6 6 4.2811 -0.3859 -2.1784 7 8 3.7793 0.1894 -3.1241 8 6 5.7443 -0.5999 -2.1342 9 7 6.2486 -1.7953 -2.3878 10 6 7.5455 -2.0419 -2.3628 11 6 8.4624 -1.0714 -2.0705 12 6 8.0078 0.2281 -1.7888 13 6 8.8865 1.2776 -1.4795 14 6 8.3843 2.5157 -1.2151 15 6 7.0116 2.7556 -1.2477 16 6 6.1299 1.7586 -1.5394 17 6 6.6099 0.4730 -1.8216 18 6 4.1050 -1.4318 0.0280 19 6 3.5708 -0.6954 1.2659 20 6 2.0408 -0.7233 1.2482 21 1 1.6969 -1.7576 1.2347 22 7 1.5264 -0.0535 2.4453 23 6 1.3963 -0.7501 3.6171 24 1 1.6725 -1.7934 3.6586 25 6 0.9095 -0.1153 4.7515 26 7 0.5733 1.1562 4.7010 27 14 0.7327 -1.0653 6.3501 28 1 1.9904 -0.9569 7.1321 29 1 -0.3912 -0.5008 7.1397 30 1 0.4583 -2.4934 6.0495 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5150 0.8894 33 1 -0.3633 0.5129 -0.8906 34 1 1.7637 -0.1574 -2.1388 35 1 1.6054 -1.7212 -1.3009 36 1 7.8923 -3.0416 -2.5793 37 1 9.5180 -1.2993 -2.0562 38 1 9.9522 1.1049 -1.4514 39 1 9.0599 3.3239 -0.9766 40 1 6.6405 3.7470 -1.0335 41 1 5.0689 1.9588 -1.5565 42 1 3.8338 -2.4862 0.0814 43 1 5.1896 -1.3332 -0.0178 44 1 3.9159 0.3385 1.2542 45 1 3.9333 -1.1898 2.1672 46 1 1.2781 0.8833 2.4079 47 1 0.2335 1.6000 5.4938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036163376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:56 Heat of formation + Delta-G solvation = 13.777238 kcal Electronic energy + Delta-G solvation = -29579.554412 eV Core-core repulsion = 25726.384066 eV Total energy + Delta-G solvation = -3853.170346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.30726 -40.91882 -39.07821 -38.35393 -36.24799 -34.65791 -33.92914 -33.08991 -32.28860 -31.15226 -30.72818 -28.01824 -26.92861 -25.69617 -24.64252 -24.50572 -23.53211 -23.14009 -21.43438 -20.62125 -19.15046 -18.98462 -18.62970 -18.17711 -17.54892 -16.86020 -16.74178 -16.20269 -15.74557 -15.69182 -15.56443 -15.37704 -15.20641 -14.95955 -14.81174 -14.63561 -14.40597 -14.01067 -13.80062 -13.71404 -13.26348 -13.17572 -12.96674 -12.84922 -12.81569 -12.78158 -12.51113 -12.28608 -12.16021 -12.10931 -11.87220 -11.68705 -11.45344 -11.22506 -11.17673 -10.87884 -10.58599 -10.18076 -9.83409 -9.11201 -8.97165 -7.90840 -5.18684 -0.86418 -0.16162 0.74348 1.23241 1.49236 1.49679 1.58054 1.70841 2.01450 2.58030 2.89937 3.02101 3.42069 3.48996 3.63580 3.71389 3.74880 3.77244 3.85913 3.92093 3.99136 4.07787 4.22291 4.25136 4.30097 4.34813 4.42011 4.45677 4.60040 4.69643 4.72103 4.73544 4.75833 4.78339 4.89892 4.92444 4.98933 5.06163 5.14858 5.23557 5.35433 5.36570 5.41216 5.45419 5.53084 5.55137 5.57568 5.82305 6.13224 6.30376 6.72018 6.83544 7.37301 8.12087 8.36285 9.32629 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.003154 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.645414 B = 8875.000853 C = 9517.070319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 H 0.055 0.945 4 C 0.124 3.876 5 N -0.590 5.590 6 C 0.579 3.421 7 O -0.566 6.566 8 C 0.112 3.888 9 N -0.475 5.475 10 C 0.059 3.941 11 C -0.117 4.117 12 C -0.046 4.046 13 C -0.101 4.101 14 C -0.099 4.099 15 C -0.105 4.105 16 C -0.120 4.120 17 C -0.096 4.096 18 C 0.126 3.874 19 C -0.138 4.138 20 C 0.181 3.819 21 H 0.051 0.949 22 N -0.729 5.729 23 C -0.232 4.232 24 H 0.077 0.923 25 C -0.073 4.073 26 N -0.970 5.970 27 Si 0.967 3.033 28 H -0.290 1.290 29 H -0.299 1.299 30 H -0.269 1.269 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.192 0.808 37 H 0.187 0.813 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.145 0.855 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.067 0.933 46 H 0.371 0.629 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.518 -2.890 -14.919 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.119 4.119 3 H 0.073 0.927 4 C 0.002 3.998 5 N -0.320 5.320 6 C 0.365 3.635 7 O -0.445 6.445 8 C -0.040 4.040 9 N -0.186 5.186 10 C -0.087 4.087 11 C -0.136 4.136 12 C -0.051 4.051 13 C -0.119 4.119 14 C -0.118 4.118 15 C -0.123 4.123 16 C -0.140 4.140 17 C -0.099 4.099 18 C 0.003 3.997 19 C -0.179 4.179 20 C 0.073 3.927 21 H 0.069 0.931 22 N -0.368 5.368 23 C -0.364 4.364 24 H 0.095 0.905 25 C -0.266 4.266 26 N -0.621 5.621 27 Si 0.797 3.203 28 H -0.217 1.217 29 H -0.226 1.226 30 H -0.194 1.194 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.209 0.791 37 H 0.204 0.796 38 H 0.191 0.809 39 H 0.182 0.818 40 H 0.163 0.837 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.203 0.797 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 18.737 -3.528 -15.496 24.569 hybrid contribution -0.231 0.902 1.343 1.634 sum 18.506 -2.626 -14.153 23.445 Atomic orbital electron populations 1.21569 0.93451 1.02225 1.01412 1.21601 0.97023 0.99090 0.94160 0.92670 1.21766 0.77667 1.01969 0.98366 1.48116 1.07346 1.58606 1.17938 1.18134 0.85724 0.77526 0.82098 1.90757 1.74798 1.43583 1.35339 1.20984 0.93189 0.90518 0.99315 1.67295 1.18246 1.20911 1.12117 1.22814 0.86485 1.01844 0.97528 1.22577 1.03385 0.91093 0.96568 1.18535 0.91406 0.96417 0.98735 1.21453 1.00912 0.91425 0.98065 1.21450 0.94956 0.98483 0.96924 1.21337 0.94101 0.99704 0.97166 1.20983 1.00168 0.92639 1.00214 1.18824 0.94467 0.94498 1.02137 1.21807 0.97509 0.97689 0.82675 1.22551 0.98930 0.99737 0.96706 1.20388 0.91088 0.95569 0.85685 0.93110 1.42553 1.76758 1.10910 1.06606 1.19596 1.33903 0.94436 0.88497 0.90517 1.25459 1.03035 0.96888 1.01169 1.69814 1.51963 1.11082 1.29225 0.85232 0.76660 0.78238 0.80207 1.21697 1.22641 1.19387 0.92126 0.93836 0.91524 0.89230 0.89161 0.79132 0.79555 0.80868 0.81813 0.83692 0.87404 0.89413 0.90520 0.93695 0.91398 0.79671 0.94241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.02 71.98 0.65 -3.51 16 2 C -0.10 -3.29 2.46 -10.72 -0.03 -3.32 16 3 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 4 C 0.12 3.68 5.72 86.36 0.49 4.17 16 5 N -0.59 -18.13 2.97 -821.36 -2.44 -20.56 16 6 C 0.58 19.40 6.07 86.81 0.53 19.92 16 7 O -0.57 -22.08 16.51 -3.83 -0.06 -22.15 16 8 C 0.11 3.31 4.54 42.43 0.19 3.50 16 9 N -0.47 -12.59 10.20 -184.95 -1.89 -14.48 16 10 C 0.06 1.06 11.06 84.30 0.93 1.99 16 11 C -0.12 -1.67 9.88 22.46 0.22 -1.45 16 12 C -0.05 -0.88 5.75 -21.29 -0.12 -1.00 16 13 C -0.10 -1.35 9.82 22.30 0.22 -1.13 16 14 C -0.10 -1.38 9.95 22.07 0.22 -1.16 16 15 C -0.11 -2.05 9.95 22.08 0.22 -1.83 16 16 C -0.12 -3.17 9.42 22.26 0.21 -2.96 16 17 C -0.10 -2.56 5.76 -21.14 -0.12 -2.69 16 18 C 0.13 3.63 6.35 86.51 0.55 4.18 16 19 C -0.14 -4.79 5.67 30.82 0.17 -4.61 16 20 C 0.18 6.89 2.19 45.02 0.10 6.99 16 21 H 0.05 1.93 8.08 -2.38 -0.02 1.92 16 22 N -0.73 -35.47 4.41 -322.80 -1.42 -36.90 16 23 C -0.23 -12.45 9.93 84.03 0.83 -11.62 16 24 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 25 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 26 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 27 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 28 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 29 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 30 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.04 1.68 7.37 -2.38 -0.02 1.66 16 33 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.09 2.73 7.00 -2.39 -0.02 2.71 16 35 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16 38 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 41 H 0.11 3.24 7.23 -2.91 -0.02 3.22 16 42 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 43 H 0.08 2.15 6.35 -2.39 -0.02 2.13 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.37 19.81 7.50 -92.71 -0.70 19.12 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -73.22 384.02 2.53 -70.70 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.29 Total: 32.45 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.74 Total: 1.83 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -5.46 Total: -130.31 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.22 2.53 -70.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036163376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.474 kcal (2) G-P(sol) polarization free energy of solvation -73.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds