Wall clock time and date at job start Tue Mar 31 2020 22:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.51921 * 2 1 4 4 C 1.53190 * 109.50272 * 120.08278 * 2 1 3 5 5 N 1.46925 * 108.89309 * 174.65244 * 4 2 1 6 6 C 1.34780 * 120.62521 * 126.29778 * 5 4 2 7 7 O 1.21544 * 120.00109 * 354.92263 * 6 5 4 8 8 C 1.47948 * 120.00016 * 174.91918 * 6 5 4 9 9 N 1.32204 * 120.15886 * 284.07612 * 8 6 5 10 10 C 1.32021 * 122.68228 * 179.69806 * 9 8 6 11 11 C 1.36689 * 122.02675 * 0.58234 * 10 9 8 12 12 C 1.40526 * 118.84833 * 359.71596 * 11 10 9 13 13 C 1.40318 * 122.22024 * 179.97438 * 12 11 10 14 14 C 1.36202 * 119.45497 * 180.02562 * 13 12 11 15 15 C 1.39384 * 121.00175 * 359.97438 * 14 13 12 16 16 C 1.36254 * 121.08184 * 0.02562 * 15 14 13 17 17 C 1.40091 * 119.53951 * 359.97438 * 16 15 14 18 18 C 1.46920 * 118.74080 * 306.32666 * 5 4 2 19 19 C 1.53195 * 108.77718 * 53.60864 * 18 5 4 20 20 C 1.53040 * 109.30896 * 305.36040 * 19 18 5 21 21 H 1.08997 * 109.45494 * 181.38850 * 20 19 18 22 22 N 1.46503 * 109.46420 * 301.36157 * 20 19 18 23 23 C 1.36933 * 119.99637 * 275.00254 * 22 20 19 24 24 H 1.07999 * 120.00304 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99752 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99998 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00079 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47402 * 59.99832 * 27 25 23 29 29 H 1.48502 * 109.47552 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47158 * 299.99969 * 27 25 23 31 31 H 1.09002 * 109.47243 * 299.90986 * 1 2 3 32 32 H 1.08997 * 109.47963 * 59.91554 * 1 2 3 33 33 H 1.09000 * 109.46953 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58055 * 54.79781 * 4 2 1 35 35 H 1.08993 * 109.58786 * 294.52087 * 4 2 1 36 36 H 1.08001 * 118.98387 * 180.32219 * 10 9 8 37 37 H 1.08000 * 120.57332 * 179.74583 * 11 10 9 38 38 H 1.08004 * 120.27069 * 359.97438 * 13 12 11 39 39 H 1.08007 * 119.49866 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.45908 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.23130 * 179.97438 * 16 15 14 42 42 H 1.09008 * 109.58162 * 173.39485 * 18 5 4 43 43 H 1.09002 * 109.59029 * 293.81312 * 18 5 4 44 44 H 1.08999 * 109.49660 * 65.31423 * 19 18 5 45 45 H 1.09003 * 109.49466 * 185.41570 * 19 18 5 46 46 H 0.96998 * 119.99864 * 94.99581 * 22 20 19 47 47 H 0.96999 * 120.00276 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5049 -0.8291 1.1728 6 6 4.2791 -0.3844 2.1824 7 8 3.7751 0.1922 3.1263 8 6 5.7425 -0.5983 2.1419 9 7 6.2468 -1.7921 2.4030 10 6 7.5432 -2.0400 2.3754 11 6 8.4607 -1.0695 2.0843 12 6 8.0066 0.2297 1.8003 13 6 8.8859 1.2792 1.4932 14 6 8.3842 2.5172 1.2275 15 6 7.0114 2.7567 1.2556 16 6 6.1294 1.7608 1.5500 17 6 6.6084 0.4741 1.8288 18 6 4.1083 -1.4277 -0.0256 19 6 3.5765 -0.6971 -1.2628 20 6 2.0464 -0.7255 -1.2485 21 1 1.6658 -0.2278 -2.1403 22 7 1.5841 -2.1155 -1.2303 23 6 1.4553 -2.8095 -2.4037 24 1 1.6950 -2.3324 -3.3424 25 6 1.0178 -4.1268 -2.3865 26 7 0.7271 -4.7088 -1.2423 27 14 0.8428 -5.0739 -3.9870 28 1 2.1606 -5.1425 -4.6683 29 1 0.3619 -6.4490 -3.6986 30 1 -0.1338 -4.3829 -4.8669 31 1 -0.3634 0.5124 0.8908 32 1 -0.3635 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6053 -1.7216 1.2979 35 1 1.7617 -0.1594 2.1390 36 1 7.8897 -3.0394 2.5936 37 1 9.5163 -1.2974 2.0723 38 1 9.9518 1.1068 1.4685 39 1 9.0603 3.3254 0.9905 40 1 6.6406 3.7480 1.0404 41 1 5.0684 1.9618 1.5683 42 1 5.1925 -1.3253 0.0213 43 1 3.8409 -2.4829 -0.0812 44 1 3.9214 0.3368 -1.2510 45 1 3.9411 -1.1927 -2.1626 46 1 1.3693 -2.5442 -0.3871 47 1 0.4217 -5.6293 -1.2302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036163379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:01 Heat of formation + Delta-G solvation = 35.679029 kcal Electronic energy + Delta-G solvation = -29958.590395 eV Core-core repulsion = 26106.369783 eV Total energy + Delta-G solvation = -3852.220613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.30508 -39.69620 -37.76494 -37.42947 -34.29976 -33.33171 -32.66789 -31.48366 -31.39179 -29.96433 -29.17246 -26.70718 -25.41194 -24.33511 -23.78342 -23.48701 -22.71358 -21.66728 -20.09125 -18.57753 -17.96465 -17.62615 -17.36177 -16.99788 -16.32305 -15.79858 -15.20273 -14.82906 -14.59886 -14.43948 -14.24446 -14.11584 -13.97183 -13.93000 -13.51435 -13.27323 -13.08352 -12.81912 -12.52759 -12.37973 -12.18912 -12.09089 -11.59559 -11.48296 -11.37381 -11.18795 -10.89442 -10.79265 -10.50531 -10.48903 -10.43001 -10.21644 -10.07647 -9.84387 -9.55397 -9.48752 -9.35127 -8.92863 -8.29742 -8.27541 -6.97568 -5.77969 -3.06757 0.01674 0.67303 1.60486 2.53293 2.81322 3.07081 3.42402 3.47551 3.48433 3.80768 4.16394 4.29777 4.46905 4.55897 4.57945 4.65662 4.87834 4.90532 5.09713 5.09979 5.21775 5.30318 5.35466 5.47400 5.51256 5.53732 5.60025 5.69649 5.73181 5.80335 5.81900 5.90224 6.04131 6.10111 6.12144 6.16030 6.24625 6.30541 6.34229 6.39042 6.49379 6.55673 6.59790 6.68874 6.74901 6.91738 6.97987 7.57646 7.68578 7.71546 8.19134 8.40235 9.51823 10.08222 10.43343 11.44255 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.003377 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.658877 B = 8288.697124 C = 8897.204964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.118 3.882 5 N -0.582 5.582 6 C 0.575 3.425 7 O -0.537 6.537 8 C 0.152 3.848 9 N -0.455 5.455 10 C 0.084 3.916 11 C -0.148 4.148 12 C -0.024 4.024 13 C -0.114 4.114 14 C -0.095 4.095 15 C -0.117 4.117 16 C -0.079 4.079 17 C -0.084 4.084 18 C 0.121 3.879 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.010 4.010 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.161 0.839 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.627 13.647 5.288 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.085 0.915 4 C -0.004 4.004 5 N -0.313 5.313 6 C 0.360 3.640 7 O -0.414 6.414 8 C -0.002 4.002 9 N -0.165 5.165 10 C -0.062 4.062 11 C -0.168 4.168 12 C -0.029 4.029 13 C -0.132 4.132 14 C -0.115 4.115 15 C -0.135 4.135 16 C -0.099 4.099 17 C -0.087 4.087 18 C -0.002 4.002 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.361 5.361 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.579 5.579 27 Si 0.735 3.265 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.178 0.822 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.220 0.780 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.839 13.078 5.834 20.622 hybrid contribution 0.637 -0.244 -0.912 1.139 sum 15.476 12.833 4.922 20.698 Atomic orbital electron populations 1.21655 0.94028 1.03284 1.00495 1.21767 0.96617 0.98808 0.95611 0.91540 1.21757 0.77690 1.02051 0.98908 1.48030 1.07225 1.58166 1.17871 1.17762 0.84625 0.78806 0.82838 1.90791 1.73676 1.42655 1.34232 1.21365 0.94409 0.89184 0.95220 1.67414 1.16083 1.21165 1.11831 1.22277 0.87463 0.99950 0.96488 1.22074 1.01427 0.92622 1.00664 1.18126 0.92219 0.94608 0.97924 1.20959 0.99330 0.92368 1.00493 1.21018 0.95519 0.97119 0.97810 1.20963 0.93172 0.99584 0.99788 1.21039 1.00685 0.91446 0.96714 1.18680 0.93124 0.94876 1.02000 1.21689 0.95843 0.99310 0.83338 1.22547 1.00618 0.98570 0.97322 1.20271 0.90577 0.87437 0.94870 0.92998 1.42466 1.78933 1.07664 1.06996 1.19162 1.37468 0.93913 0.86549 0.91324 1.24698 1.02207 0.97152 0.96554 1.69634 1.51488 1.13114 1.23676 0.86323 0.77722 0.79258 0.83163 1.21390 1.21796 1.21373 0.93682 0.92735 0.90972 0.90116 0.89512 0.82209 0.84027 0.84887 0.85373 0.85271 0.84945 0.92049 0.89249 0.93342 0.90635 0.78048 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.07 37.16 0.34 -1.82 16 2 C -0.11 -1.75 2.68 -90.34 -0.24 -1.99 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 2.02 5.42 -3.71 -0.02 2.00 16 5 N -0.58 -10.05 2.97 -173.84 -0.52 -10.57 16 6 C 0.57 10.19 6.07 -12.28 -0.07 10.11 16 7 O -0.54 -10.64 16.51 5.33 0.09 -10.56 16 8 C 0.15 2.43 4.54 -82.55 -0.37 2.05 16 9 N -0.45 -7.15 10.22 -9.81 -0.10 -7.25 16 10 C 0.08 1.00 11.06 -18.03 -0.20 0.80 16 11 C -0.15 -1.49 9.88 -39.28 -0.39 -1.88 16 12 C -0.02 -0.27 5.75 -106.83 -0.61 -0.88 16 13 C -0.11 -1.00 9.82 -39.53 -0.39 -1.38 16 14 C -0.10 -0.78 9.95 -39.89 -0.40 -1.18 16 15 C -0.12 -1.11 9.95 -39.87 -0.40 -1.51 16 16 C -0.08 -0.98 9.42 -39.60 -0.37 -1.35 16 17 C -0.08 -1.16 5.76 -106.59 -0.61 -1.77 16 18 C 0.12 2.09 6.06 -3.71 -0.02 2.07 16 19 C -0.15 -2.53 5.78 -26.61 -0.15 -2.68 16 20 C 0.18 3.32 2.54 -67.73 -0.17 3.15 16 21 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 22 N -0.72 -16.50 3.65 -53.23 -0.19 -16.70 16 23 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -27.10 13.06 55.49 0.72 -26.38 16 27 Si 0.90 21.80 29.55 -169.99 -5.02 16.77 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.33 7.55 -51.93 -0.39 0.93 16 34 H 0.08 1.53 6.64 -51.93 -0.34 1.19 16 35 H 0.09 1.46 6.99 -51.93 -0.36 1.10 16 36 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.13 1.70 7.23 -52.49 -0.38 1.32 16 42 H 0.06 1.00 6.36 -51.92 -0.33 0.67 16 43 H 0.09 1.82 7.74 -51.93 -0.40 1.42 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 46 H 0.38 9.50 5.93 -40.82 -0.24 9.26 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -31.59 380.12 -10.28 -41.87 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -6.65 Total: 10.11 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -4.34 Total: -3.03 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.09 Total: -60.89 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.59 -10.28 -41.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036163379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.545 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds