Wall clock time and date at job start Tue Mar 31 2020 22:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.51921 * 2 1 4 4 C 1.53190 * 109.50272 * 120.08278 * 2 1 3 5 5 N 1.46925 * 108.89309 * 174.65244 * 4 2 1 6 6 C 1.34780 * 120.62521 * 126.29778 * 5 4 2 7 7 O 1.21544 * 120.00109 * 354.92263 * 6 5 4 8 8 C 1.47948 * 120.00016 * 174.91918 * 6 5 4 9 9 N 1.32204 * 120.15886 * 284.07612 * 8 6 5 10 10 C 1.32021 * 122.68228 * 179.69806 * 9 8 6 11 11 C 1.36689 * 122.02675 * 0.58234 * 10 9 8 12 12 C 1.40526 * 118.84833 * 359.71596 * 11 10 9 13 13 C 1.40318 * 122.22024 * 179.97438 * 12 11 10 14 14 C 1.36202 * 119.45497 * 180.02562 * 13 12 11 15 15 C 1.39384 * 121.00175 * 359.97438 * 14 13 12 16 16 C 1.36254 * 121.08184 * 0.02562 * 15 14 13 17 17 C 1.40091 * 119.53951 * 359.97438 * 16 15 14 18 18 C 1.46920 * 118.74080 * 306.32666 * 5 4 2 19 19 C 1.53195 * 108.77718 * 53.60864 * 18 5 4 20 20 C 1.53040 * 109.30896 * 305.36040 * 19 18 5 21 21 H 1.08997 * 109.45494 * 181.38850 * 20 19 18 22 22 N 1.46503 * 109.46420 * 301.36157 * 20 19 18 23 23 C 1.36933 * 119.99637 * 275.00254 * 22 20 19 24 24 H 1.07999 * 120.00304 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99752 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99998 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00079 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47402 * 59.99832 * 27 25 23 29 29 H 1.48502 * 109.47552 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47158 * 299.99969 * 27 25 23 31 31 H 1.09002 * 109.47243 * 299.90986 * 1 2 3 32 32 H 1.08997 * 109.47963 * 59.91554 * 1 2 3 33 33 H 1.09000 * 109.46953 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58055 * 54.79781 * 4 2 1 35 35 H 1.08993 * 109.58786 * 294.52087 * 4 2 1 36 36 H 1.08001 * 118.98387 * 180.32219 * 10 9 8 37 37 H 1.08000 * 120.57332 * 179.74583 * 11 10 9 38 38 H 1.08004 * 120.27069 * 359.97438 * 13 12 11 39 39 H 1.08007 * 119.49866 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.45908 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.23130 * 179.97438 * 16 15 14 42 42 H 1.09008 * 109.58162 * 173.39485 * 18 5 4 43 43 H 1.09002 * 109.59029 * 293.81312 * 18 5 4 44 44 H 1.08999 * 109.49660 * 65.31423 * 19 18 5 45 45 H 1.09003 * 109.49466 * 185.41570 * 19 18 5 46 46 H 0.96998 * 119.99864 * 94.99581 * 22 20 19 47 47 H 0.96999 * 120.00276 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5049 -0.8291 1.1728 6 6 4.2791 -0.3844 2.1824 7 8 3.7751 0.1922 3.1263 8 6 5.7425 -0.5983 2.1419 9 7 6.2468 -1.7921 2.4030 10 6 7.5432 -2.0400 2.3754 11 6 8.4607 -1.0695 2.0843 12 6 8.0066 0.2297 1.8003 13 6 8.8859 1.2792 1.4932 14 6 8.3842 2.5172 1.2275 15 6 7.0114 2.7567 1.2556 16 6 6.1294 1.7608 1.5500 17 6 6.6084 0.4741 1.8288 18 6 4.1083 -1.4277 -0.0256 19 6 3.5765 -0.6971 -1.2628 20 6 2.0464 -0.7255 -1.2485 21 1 1.6658 -0.2278 -2.1403 22 7 1.5841 -2.1155 -1.2303 23 6 1.4553 -2.8095 -2.4037 24 1 1.6950 -2.3324 -3.3424 25 6 1.0178 -4.1268 -2.3865 26 7 0.7271 -4.7088 -1.2423 27 14 0.8428 -5.0739 -3.9870 28 1 2.1606 -5.1425 -4.6683 29 1 0.3619 -6.4490 -3.6986 30 1 -0.1338 -4.3829 -4.8669 31 1 -0.3634 0.5124 0.8908 32 1 -0.3635 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6053 -1.7216 1.2979 35 1 1.7617 -0.1594 2.1390 36 1 7.8897 -3.0394 2.5936 37 1 9.5163 -1.2974 2.0723 38 1 9.9518 1.1068 1.4685 39 1 9.0603 3.3254 0.9905 40 1 6.6406 3.7480 1.0404 41 1 5.0684 1.9618 1.5683 42 1 5.1925 -1.3253 0.0213 43 1 3.8409 -2.4829 -0.0812 44 1 3.9214 0.3368 -1.2510 45 1 3.9411 -1.1927 -2.1626 46 1 1.3693 -2.5442 -0.3871 47 1 0.4217 -5.6293 -1.2302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036163379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:00 Heat of formation + Delta-G solvation = 17.213746 kcal Electronic energy + Delta-G solvation = -29959.391110 eV Core-core repulsion = 26106.369783 eV Total energy + Delta-G solvation = -3853.021327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.30615 -40.96208 -39.14681 -38.34472 -35.93241 -34.64326 -33.91615 -33.04685 -32.27106 -31.01441 -30.74679 -27.99597 -26.89201 -25.59259 -25.17886 -24.59468 -23.65003 -23.11887 -21.26563 -19.94959 -19.27028 -18.98283 -18.61055 -18.14278 -17.52172 -16.81296 -16.65180 -16.11544 -15.97925 -15.68726 -15.59408 -15.35091 -15.18769 -14.90849 -14.77076 -14.61633 -14.35169 -14.26104 -13.78541 -13.65105 -13.25137 -13.02256 -12.97651 -12.83633 -12.78337 -12.69011 -12.46642 -12.25262 -12.16761 -12.01238 -11.94835 -11.59989 -11.43868 -11.19432 -11.17198 -10.86176 -10.55258 -10.16110 -9.75386 -9.09569 -8.93196 -7.87752 -5.14670 -0.84539 -0.14157 0.76523 1.23565 1.49753 1.51235 1.57146 1.74320 2.03577 2.60243 2.92291 3.04018 3.45441 3.50728 3.64928 3.74213 3.77774 3.85041 3.87907 3.95879 4.03590 4.09251 4.23592 4.27089 4.33452 4.35699 4.42984 4.49586 4.55901 4.66545 4.70701 4.76616 4.81188 4.89848 4.95847 5.00392 5.08252 5.10262 5.16500 5.21397 5.26092 5.39367 5.42902 5.44682 5.53931 5.56474 5.60974 5.85967 6.18917 6.33275 6.74245 6.85443 7.40806 8.16613 8.40232 9.35351 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.003377 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.658877 B = 8288.697124 C = 8897.204964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.097 4.097 3 H 0.090 0.910 4 C 0.121 3.879 5 N -0.583 5.583 6 C 0.577 3.423 7 O -0.568 6.568 8 C 0.112 3.888 9 N -0.487 5.487 10 C 0.054 3.946 11 C -0.118 4.118 12 C -0.046 4.046 13 C -0.102 4.102 14 C -0.096 4.096 15 C -0.099 4.099 16 C -0.117 4.117 17 C -0.095 4.095 18 C 0.135 3.865 19 C -0.139 4.139 20 C 0.174 3.826 21 H 0.055 0.945 22 N -0.725 5.725 23 C -0.230 4.230 24 H 0.077 0.923 25 C -0.072 4.072 26 N -0.969 5.969 27 Si 0.965 3.035 28 H -0.280 1.280 29 H -0.302 1.302 30 H -0.280 1.280 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.183 0.817 37 H 0.187 0.813 38 H 0.172 0.828 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.373 0.627 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.120 16.301 4.123 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.116 4.116 3 H 0.109 0.891 4 C -0.001 4.001 5 N -0.313 5.313 6 C 0.363 3.637 7 O -0.447 6.447 8 C -0.040 4.040 9 N -0.198 5.198 10 C -0.091 4.091 11 C -0.137 4.137 12 C -0.051 4.051 13 C -0.120 4.120 14 C -0.115 4.115 15 C -0.117 4.117 16 C -0.137 4.137 17 C -0.097 4.097 18 C 0.012 3.988 19 C -0.180 4.180 20 C 0.065 3.935 21 H 0.073 0.927 22 N -0.366 5.366 23 C -0.362 4.362 24 H 0.095 0.905 25 C -0.265 4.265 26 N -0.620 5.620 27 Si 0.795 3.205 28 H -0.206 1.206 29 H -0.229 1.229 30 H -0.206 1.206 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.200 0.800 37 H 0.204 0.796 38 H 0.189 0.811 39 H 0.185 0.815 40 H 0.172 0.828 41 H 0.132 0.868 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.206 0.794 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.348 15.783 4.639 24.643 hybrid contribution -0.284 -0.924 -0.511 1.093 sum 18.064 14.859 4.127 23.751 Atomic orbital electron populations 1.21588 0.93553 1.01615 1.02061 1.21693 0.96906 0.99358 0.93676 0.89133 1.21660 0.78008 1.00743 0.99697 1.48036 1.07126 1.58109 1.17990 1.18162 0.85823 0.77743 0.81944 1.90738 1.74755 1.44056 1.35126 1.21034 0.93262 0.90543 0.99180 1.67264 1.18471 1.21622 1.12445 1.22730 0.86578 1.01796 0.98025 1.22557 1.03129 0.91348 0.96635 1.18530 0.91583 0.96214 0.98775 1.21428 1.00738 0.91520 0.98292 1.21482 0.95248 0.98150 0.96630 1.21360 0.93749 0.99750 0.96839 1.21009 1.00546 0.92098 1.00053 1.18833 0.94190 0.94630 1.02090 1.21443 0.96483 0.97139 0.83685 1.22414 0.99036 0.99994 0.96538 1.20495 0.91579 0.85309 0.96109 0.92710 1.42592 1.79028 1.09294 1.05676 1.19549 1.34978 0.93955 0.87691 0.90541 1.25407 1.03488 0.98411 0.99157 1.69805 1.53727 1.12865 1.25632 0.85340 0.77825 0.77380 0.79958 1.20642 1.22911 1.20627 0.91491 0.91779 0.94169 0.92757 0.89284 0.79993 0.79581 0.81093 0.81520 0.82843 0.86753 0.90951 0.92997 0.90566 0.91386 0.79378 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.07 71.98 0.65 -3.45 16 2 C -0.10 -3.13 2.68 -10.61 -0.03 -3.16 16 3 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 4 C 0.12 4.37 5.42 86.36 0.47 4.84 16 5 N -0.58 -21.12 2.97 -822.20 -2.44 -23.56 16 6 C 0.58 21.55 6.07 86.82 0.53 22.08 16 7 O -0.57 -23.81 16.51 -3.85 -0.06 -23.87 16 8 C 0.11 3.71 4.54 42.43 0.19 3.90 16 9 N -0.49 -15.84 10.22 -184.95 -1.89 -17.73 16 10 C 0.05 1.25 11.06 84.30 0.93 2.18 16 11 C -0.12 -2.02 9.88 22.47 0.22 -1.79 16 12 C -0.05 -0.92 5.75 -21.29 -0.12 -1.05 16 13 C -0.10 -1.30 9.82 22.30 0.22 -1.08 16 14 C -0.10 -1.11 9.95 22.07 0.22 -0.89 16 15 C -0.10 -1.58 9.95 22.08 0.22 -1.36 16 16 C -0.12 -2.81 9.42 22.26 0.21 -2.60 16 17 C -0.09 -2.57 5.76 -21.14 -0.12 -2.69 16 18 C 0.14 4.87 6.06 86.36 0.52 5.39 16 19 C -0.14 -4.67 5.78 30.67 0.18 -4.49 16 20 C 0.17 6.46 2.54 45.12 0.11 6.57 16 21 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 22 N -0.72 -34.37 3.65 -322.32 -1.18 -35.55 16 23 C -0.23 -12.15 9.93 84.03 0.83 -11.32 16 24 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 25 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 26 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 27 Si 0.96 45.65 29.55 68.60 2.03 47.67 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 29 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 30 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.52 7.55 -2.39 -0.02 1.50 16 34 H 0.05 2.24 6.64 -2.39 -0.02 2.22 16 35 H 0.09 3.16 6.99 -2.39 -0.02 3.14 16 36 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 39 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 40 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 41 H 0.11 3.04 7.23 -2.91 -0.02 3.02 16 42 H 0.07 2.45 6.36 -2.38 -0.02 2.43 16 43 H 0.05 2.26 7.74 -2.39 -0.02 2.24 16 44 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.37 19.48 5.93 -92.71 -0.55 18.93 16 47 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -73.48 380.12 2.88 -70.60 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.44 Total: 33.44 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 5.71 Total: 7.48 kcal Atomic # 7 Polarization: -130.09 SS G_CDS: -5.23 Total: -135.32 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.06 Total: -23.87 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.48 2.88 -70.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036163379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.814 kcal (2) G-P(sol) polarization free energy of solvation -73.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds