Wall clock time and date at job start Tue Mar 31 2020 22:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.49225 * 2 1 4 4 C 1.53191 * 109.49610 * 239.93722 * 2 1 3 5 5 N 1.46918 * 108.77530 * 185.41303 * 4 2 1 6 6 C 1.34779 * 120.63148 * 233.58509 * 5 4 2 7 7 O 1.21573 * 119.99674 * 5.85234 * 6 5 4 8 8 C 1.47756 * 120.00531 * 185.85128 * 6 5 4 9 9 C 1.40602 * 120.26444 * 41.65977 * 8 6 5 10 10 N 1.30796 * 121.53725 * 179.72679 * 9 8 6 11 11 C 1.33825 * 121.72127 * 0.02562 * 10 9 8 12 12 C 1.40525 * 120.82337 * 179.97438 * 11 10 9 13 13 C 1.36132 * 119.81565 * 180.02562 * 12 11 10 14 14 C 1.39341 * 121.08991 * 359.95580 * 13 12 11 15 15 C 1.36137 * 120.83412 * 0.04513 * 14 13 12 16 16 C 1.40549 * 119.61738 * 359.97438 * 15 14 13 17 17 C 1.39006 * 120.26986 * 221.39491 * 8 6 5 18 18 C 1.46920 * 118.73943 * 53.85895 * 5 4 2 19 19 C 1.53622 * 108.54477 * 306.09482 * 18 5 4 20 20 C 1.53034 * 109.24198 * 54.85581 * 19 18 5 21 21 H 1.09000 * 109.46296 * 58.52818 * 20 19 18 22 22 N 1.46504 * 109.46317 * 178.49104 * 20 19 18 23 23 C 1.36936 * 119.99957 * 275.06982 * 22 20 19 24 24 H 1.08003 * 119.99734 * 359.97438 * 23 22 20 25 25 C 1.38806 * 119.99979 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99989 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00187 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46909 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.46920 * 119.99625 * 27 25 23 30 30 H 1.48498 * 109.47332 * 240.00194 * 27 25 23 31 31 H 1.09005 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46969 * 300.06316 * 1 2 3 33 33 H 1.08997 * 109.47209 * 60.06589 * 1 2 3 34 34 H 1.09005 * 109.58560 * 65.62530 * 4 2 1 35 35 H 1.09003 * 109.58567 * 305.20617 * 4 2 1 36 36 H 1.07998 * 119.23550 * 359.71098 * 9 8 6 37 37 H 1.07995 * 120.08874 * 0.02562 * 12 11 10 38 38 H 1.07998 * 119.45112 * 179.97438 * 13 12 11 39 39 H 1.07994 * 119.58088 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.19088 * 179.97438 * 15 14 13 41 41 H 1.07998 * 121.02004 * 0.24348 * 17 8 6 42 42 H 1.09004 * 109.58527 * 65.93165 * 18 5 4 43 43 H 1.09001 * 109.58739 * 186.35104 * 18 5 4 44 44 H 1.09001 * 109.63509 * 294.86675 * 19 18 5 45 45 H 1.08997 * 109.43314 * 174.72671 * 19 18 5 46 46 H 0.97000 * 119.99708 * 95.06846 * 22 20 19 47 47 H 0.97002 * 119.99957 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5045 -0.8288 -1.1699 6 6 4.2810 -0.3857 -2.1785 7 8 3.7807 0.2021 -3.1177 8 6 5.7404 -0.6144 -2.1428 9 6 6.2535 -1.8515 -1.7147 10 7 7.5404 -2.0826 -1.6783 11 6 8.4325 -1.1552 -2.0454 12 6 9.8111 -1.4237 -1.9983 13 6 10.7007 -0.4649 -2.3761 14 6 10.2685 0.7858 -2.8125 15 6 8.9415 1.0839 -2.8721 16 6 7.9948 0.1181 -2.4893 17 6 6.6168 0.3898 -2.5374 18 6 4.1050 -1.4318 0.0278 19 6 3.5709 -0.6954 1.2657 20 6 2.0409 -0.7235 1.2481 21 1 1.6967 -1.7576 1.2347 22 7 1.5266 -0.0537 2.4453 23 6 1.3965 -0.7503 3.6170 24 1 1.6728 -1.7936 3.6584 25 6 0.9098 -0.1156 4.7514 26 7 0.5727 1.1557 4.7007 27 14 0.7317 -1.0661 6.3497 28 1 1.1750 -2.4683 6.1437 29 1 1.5696 -0.4316 7.3989 30 1 -0.6904 -1.0538 6.7772 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8905 34 1 1.7637 -0.1572 -2.1390 35 1 1.6051 -1.7212 -1.2986 36 1 5.5692 -2.6289 -1.4086 37 1 10.1638 -2.3879 -1.6634 38 1 11.7588 -0.6775 -2.3371 39 1 10.9955 1.5282 -3.1068 40 1 8.6181 2.0568 -3.2116 41 1 6.2501 1.3493 -2.8709 42 1 3.8338 -2.4862 0.0811 43 1 5.1896 -1.3332 -0.0181 44 1 3.9159 0.3385 1.2541 45 1 3.9335 -1.1903 2.1666 46 1 1.2782 0.8832 2.4079 47 1 0.2328 1.5993 5.4936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036192222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:12 Heat of formation + Delta-G solvation = 34.601089 kcal Electronic energy + Delta-G solvation = -28912.758062 eV Core-core repulsion = 25060.490707 eV Total energy + Delta-G solvation = -3852.267356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.33345 -39.98475 -37.80510 -37.18066 -34.71043 -33.78120 -32.95231 -31.52898 -30.96888 -30.39047 -29.33601 -26.75383 -25.35721 -24.55476 -24.10824 -22.80119 -22.40711 -21.70082 -20.41580 -19.39540 -18.46772 -17.96491 -17.14624 -16.90577 -16.38720 -15.78920 -15.21443 -15.03363 -14.84038 -14.52434 -14.44334 -14.18811 -13.98262 -13.76532 -13.54191 -13.40347 -13.34501 -13.02044 -12.47717 -12.42196 -12.15148 -12.05815 -11.82218 -11.69967 -11.57598 -11.20680 -10.97469 -10.84923 -10.82370 -10.69449 -10.44483 -10.27350 -10.18588 -9.77774 -9.65627 -9.62552 -9.09126 -8.92311 -8.65594 -8.53150 -6.99356 -5.80304 -3.09100 -0.03186 0.33604 1.58456 2.31997 2.76874 3.02112 3.40403 3.46300 3.48418 3.76790 3.90824 4.20858 4.28326 4.46950 4.47530 4.55134 4.63168 4.78261 4.87450 5.00415 5.10832 5.20313 5.21647 5.30504 5.41058 5.48156 5.50810 5.55246 5.57151 5.64973 5.70437 5.74571 5.90939 5.95423 6.04224 6.05267 6.10529 6.13964 6.26846 6.33255 6.40419 6.44403 6.48085 6.58611 6.77576 6.88789 7.01619 7.36592 7.54270 7.66651 8.05342 8.37834 9.49468 10.06561 10.41315 11.42196 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.002659 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.645480 B =10526.333951 C =11621.485779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.597 5.597 6 C 0.564 3.436 7 O -0.540 6.540 8 C -0.182 4.182 9 C 0.162 3.838 10 N -0.475 5.475 11 C 0.138 3.862 12 C -0.097 4.097 13 C -0.094 4.094 14 C -0.121 4.121 15 C -0.086 4.086 16 C -0.110 4.110 17 C 0.002 3.998 18 C 0.098 3.902 19 C -0.151 4.151 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.720 5.720 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.167 0.833 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.149 0.851 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.719 -3.350 -16.821 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.329 5.329 6 C 0.351 3.649 7 O -0.418 6.418 8 C -0.187 4.187 9 C -0.011 4.011 10 N -0.182 5.182 11 C 0.018 3.982 12 C -0.115 4.115 13 C -0.114 4.114 14 C -0.139 4.139 15 C -0.105 4.105 16 C -0.112 4.112 17 C -0.024 4.024 18 C -0.025 4.025 19 C -0.192 4.192 20 C 0.073 3.927 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.184 0.816 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.836 -3.967 -16.880 24.168 hybrid contribution -0.441 0.662 0.863 1.174 sum 16.395 -3.305 -16.017 23.157 Atomic orbital electron populations 1.21660 0.94000 1.01818 1.01898 1.21744 0.96657 1.00090 0.94507 0.91199 1.21781 0.77724 1.01083 0.99629 1.48075 1.07361 1.59702 1.17741 1.18027 0.85599 0.78763 0.82511 1.90780 1.74726 1.41586 1.34686 1.20933 0.94795 0.97142 1.05807 1.23217 0.91903 0.94667 0.91333 1.67997 1.02350 1.32373 1.15527 1.19016 0.94144 0.89209 0.95865 1.20840 0.90277 1.00437 0.99985 1.20986 1.00142 0.93108 0.97181 1.20948 0.95888 0.97156 0.99880 1.21074 0.92803 0.98508 0.98139 1.18806 0.93910 0.95709 1.02763 1.21863 0.91046 0.98785 0.90739 1.22275 0.97846 0.97526 0.84848 1.22771 1.00414 1.00364 0.95634 1.20200 0.90244 0.95766 0.86456 0.93290 1.42416 1.76418 1.11451 1.05765 1.19255 1.35825 0.94114 0.87660 0.91155 1.24733 1.02071 0.96023 0.98072 1.69670 1.50042 1.09506 1.28780 0.86157 0.77316 0.78892 0.84056 1.20558 1.21947 1.21906 0.92997 0.90711 0.93788 0.89160 0.91183 0.81565 0.84461 0.85102 0.85272 0.84886 0.83376 0.90863 0.90234 0.92171 0.90431 0.78213 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.02 37.16 0.34 -1.81 16 2 C -0.11 -1.76 2.46 -90.50 -0.22 -1.98 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.12 1.67 5.72 -3.72 -0.02 1.65 16 5 N -0.60 -8.15 2.97 -173.65 -0.51 -8.66 16 6 C 0.56 8.11 7.31 -12.37 -0.09 8.02 16 7 O -0.54 -9.26 16.36 5.30 0.09 -9.18 16 8 C -0.18 -2.27 5.08 -104.83 -0.53 -2.80 16 9 C 0.16 1.88 8.55 -17.10 -0.15 1.74 16 10 N -0.48 -5.85 10.30 -10.67 -0.11 -5.96 16 11 C 0.14 1.60 6.61 -84.79 -0.56 1.04 16 12 C -0.10 -0.89 9.97 -39.48 -0.39 -1.28 16 13 C -0.09 -0.67 9.94 -39.93 -0.40 -1.06 16 14 C -0.12 -0.84 9.96 -39.93 -0.40 -1.24 16 15 C -0.09 -0.72 9.77 -39.47 -0.39 -1.10 16 16 C -0.11 -1.19 5.74 -106.81 -0.61 -1.80 16 17 C 0.00 0.02 9.55 -38.43 -0.37 -0.34 16 18 C 0.10 1.25 4.95 -3.49 -0.02 1.23 16 19 C -0.15 -2.47 5.67 -26.39 -0.15 -2.62 16 20 C 0.18 3.37 2.19 -67.89 -0.15 3.22 16 21 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 22 N -0.72 -16.97 4.41 -53.39 -0.24 -17.21 16 23 C -0.24 -6.27 9.93 -15.06 -0.15 -6.41 16 24 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 27 Si 0.90 21.88 29.55 -169.99 -5.02 16.86 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.40 7.36 -51.93 -0.38 1.01 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.17 1.62 6.68 -52.49 -0.35 1.27 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 43 H 0.08 0.94 4.80 -51.93 -0.25 0.69 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.38 9.82 7.50 -40.82 -0.31 9.51 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -32.00 380.72 -10.38 -42.38 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.69 Total: 8.79 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -4.35 Total: -6.02 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.14 Total: -58.57 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.00 -10.38 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036192222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.979 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds